Strain Fitness in Sphingobium sp. HT1-2 around GFF5311

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,301,264	+		GFF5310	0.61	-1.3
5,301,268	+		GFF5310	0.62	-1.3
5,301,276	-		GFF5310	0.62	-2.3
5,301,285	+		GFF5310	0.62	+0.4
5,301,292	+		GFF5310	0.63	-0.1
5,301,297	+		GFF5310	0.63	-0.4
5,301,300	-		GFF5310	0.63	-0.1
5,301,305	-		GFF5310	0.63	+1.4
5,301,305	-		GFF5310	0.63	+0.9
5,301,305	-		GFF5310	0.63	+0.9
5,301,337	+		GFF5310	0.64	+0.9
5,301,337	+		GFF5310	0.64	-1.0
5,301,345	-		GFF5310	0.65	-0.8
5,301,350	-		GFF5310	0.65	+0.9
5,301,356	+		GFF5310	0.65	-0.9
5,301,363	+		GFF5310	0.65	+1.0
5,301,363	+		GFF5310	0.65	+0.7
5,301,363	+		GFF5310	0.65	+0.0
5,301,364	+		GFF5310	0.65	-0.2
5,301,366	-		GFF5310	0.66	-0.8
5,301,366	-		GFF5310	0.66	-1.0
5,301,370	-		GFF5310	0.66	+0.4
5,301,370	-		GFF5310	0.66	+0.1
5,301,370	-		GFF5310	0.66	-1.9
5,301,372	-		GFF5310	0.66	-1.6
5,301,376	+		GFF5310	0.66	+0.6
5,301,376	+		GFF5310	0.66	+0.6
5,301,376	-		GFF5310	0.66	-0.4
5,301,389	-		GFF5310	0.66	+0.2
5,301,403	-		GFF5310	0.67	-1.6
5,301,427	+		GFF5310	0.68	-0.1
5,301,429	+		GFF5310	0.68	+1.7
5,301,435	-		GFF5310	0.68	+0.6
5,301,435	-		GFF5310	0.68	+0.9
5,301,435	-		GFF5310	0.68	-1.8
5,301,440	-		GFF5310	0.69	-0.3
5,301,445	-		GFF5310	0.69	-0.5
5,301,445	-		GFF5310	0.69	-0.3
5,301,451	+		GFF5310	0.69	+0.8
5,301,451	+		GFF5310	0.69	+0.0
5,301,459	-		GFF5310	0.69	-0.7
5,301,468	+		GFF5310	0.70	+0.0
5,301,468	+		GFF5310	0.70	-0.7
5,301,468	-		GFF5310	0.70	-0.8
5,301,480	+		GFF5310	0.70	-0.9
5,301,488	+		GFF5310	0.70	+0.4
5,301,488	-		GFF5310	0.70	-1.5
5,301,488	-		GFF5310	0.70	+0.9
5,301,496	-		GFF5310	0.71	+1.5
5,301,496	-		GFF5310	0.71	-0.4
5,301,497	-		GFF5310	0.71	-0.4
5,301,508	+		GFF5310	0.71	+0.2
5,301,528	-		GFF5310	0.72	-0.8
5,301,565	-		GFF5310	0.74	-2.6
5,301,572	-		GFF5310	0.74	+1.4
5,301,600	+		GFF5310	0.75	-0.1
5,301,672	+		GFF5310	0.78	+0.9
5,301,675	-		GFF5310	0.78	-1.6
5,301,709	-		GFF5310	0.79	-0.6
5,301,743	-		GFF5310	0.81	-0.4
5,301,743	-		GFF5310	0.81	+0.2
5,301,743	-		GFF5310	0.81	-0.3
5,301,747	+		GFF5310	0.81	+0.4
5,301,747	+		GFF5310	0.81	-0.0
5,301,747	+		GFF5310	0.81	-0.3
5,301,747	+		GFF5310	0.81	-0.2
5,301,747	+		GFF5310	0.81	+0.6
5,301,747	+		GFF5310	0.81	+1.1
5,301,754	+		GFF5310	0.81	+0.5
5,301,755	-		GFF5310	0.81	-0.3
5,301,755	-		GFF5310	0.81	+0.8
5,301,755	-		GFF5310	0.81	+0.4
5,301,755	-		GFF5310	0.81	+0.7
5,301,755	-		GFF5310	0.81	-0.7
5,301,755	-		GFF5310	0.81	+0.5
5,301,755	-		GFF5310	0.81	-1.6
5,301,755	-		GFF5310	0.81	-0.1
5,301,755	-		GFF5310	0.81	+0.4
5,301,760	+		GFF5310	0.82	+0.1
5,301,761	+		GFF5310	0.82	-1.8
5,301,768	-		GFF5310	0.82	-1.0
5,301,774	+		GFF5310	0.82	+0.4
5,301,775	+		GFF5310	0.82	-0.8
5,301,775	+		GFF5310	0.82	+0.5
5,301,782	+		GFF5310	0.82	-1.6
5,301,783	-		GFF5310	0.82	+0.3
5,301,783	-		GFF5310	0.82	+0.7
5,301,783	-		GFF5310	0.82	+1.6
5,301,783	-		GFF5310	0.82	+0.4
5,301,795	+		GFF5310	0.83	+0.4
5,301,797	-		GFF5310	0.83	-0.2
5,301,797	-		GFF5310	0.83	-0.2
5,301,801	+		GFF5310	0.83	+0.8
5,301,849	-		GFF5310	0.85	-1.1
5,301,853	+		GFF5310	0.85	-0.2
5,301,873	+		GFF5310	0.86	-0.9
5,301,894	-		GFF5310	0.87	-0.6
5,301,963	+		GFF5310	0.90	-0.8
5,301,967	-				-0.9
5,301,973	+				-0.2
5,302,019	-				-1.4
5,302,025	-				+1.0
5,302,041	-				-2.4
5,302,042	-				-0.2
5,302,042	-				-2.1
5,302,079	-				+0.7
5,302,080	-				-3.0
5,302,082	+				-0.3
5,302,090	-				+0.4
5,302,099	-				-1.0
5,302,099	-				-0.4
5,302,099	-				-0.4
5,302,099	-				-0.2
5,302,104	+				-0.4
5,302,107	+				+1.4
5,302,109	+				-0.5
5,302,109	-				+0.4
5,302,109	-				-0.8
5,302,126	+				-0.1
5,302,126	+				+1.2
5,302,126	+				-0.1
5,302,126	+				+0.1
5,302,126	+				-0.3
5,302,126	+				-1.0
5,302,126	+				+1.7
5,302,126	+				+1.0
5,302,131	+				+0.7
5,302,134	-				-2.1
5,302,134	-				-1.0
5,302,134	-				-1.3
5,302,134	-				+0.9
5,302,134	-				-1.2
5,302,134	-				-0.6
5,302,134	-				+0.6
5,302,134	-				-0.2
5,302,149	+				-0.8
5,302,157	-				-2.1
5,302,158	+				-0.6
5,302,159	+				+1.5
5,302,171	-				+1.4
5,302,171	-				+0.1
5,302,215	-				+1.0
5,302,217	+				-2.3
5,302,217	+				+0.2
5,302,217	+				-1.6
5,302,222	+				+0.4
5,302,225	-				+0.3
5,302,230	-				-2.4
5,302,235	-				+0.5
5,302,237	+				+0.7
5,302,252	-				+1.0
5,302,258	-				+0.7
5,302,258	-				+0.4
5,302,260	+				-1.1
5,302,263	-				+0.1
5,302,292	-				-0.5
5,302,294	-				+1.1
5,302,306	+				+0.5
5,302,314	-				+0.2
5,302,316	+				-0.3
5,302,316	+				+0.7
5,302,316	+				+0.4
5,302,316	+				-1.5
5,302,316	+				+0.4
5,302,316	+				+1.7
5,302,316	+				-1.0
5,302,324	-		GFF5311	0.10	+1.0
5,302,329	+		GFF5311	0.10	-1.8
5,302,342	-		GFF5311	0.12	-0.1
5,302,342	-		GFF5311	0.12	-0.8
5,302,366	+		GFF5311	0.14	-1.1
5,302,366	+		GFF5311	0.14	-0.0
5,302,371	+		GFF5311	0.14	-0.2
5,302,374	-		GFF5311	0.14	+0.1
5,302,379	-		GFF5311	0.15	-0.9
5,302,379	-		GFF5311	0.15	+1.0
5,302,380	-		GFF5311	0.15	+0.2
5,302,401	+		GFF5311	0.17	+0.3
5,302,401	+		GFF5311	0.17	+0.7
5,302,409	-		GFF5311	0.18	-1.4
5,302,421	+		GFF5311	0.19	-0.8
5,302,426	+		GFF5311	0.19	+0.6
5,302,426	+		GFF5311	0.19	-0.1
5,302,426	+		GFF5311	0.19	+0.2
5,302,426	+		GFF5311	0.19	+0.9
5,302,426	+		GFF5311	0.19	+0.4
5,302,426	+		GFF5311	0.19	-0.8
5,302,426	+		GFF5311	0.19	+0.8
5,302,426	+		GFF5311	0.19	+0.1
5,302,429	-		GFF5311	0.19	-0.6
5,302,434	-		GFF5311	0.20	-0.2
5,302,434	-		GFF5311	0.20	+0.1
5,302,434	-		GFF5311	0.20	-0.9
5,302,434	-		GFF5311	0.20	-1.1
5,302,434	-		GFF5311	0.20	+0.4
5,302,475	+		GFF5311	0.24	+0.2
5,302,483	-		GFF5311	0.24	+0.4
5,302,536	+		GFF5311	0.29	+0.9
5,302,580	+		GFF5311	0.33	+0.3
5,302,588	-		GFF5311	0.34	-0.7
5,302,598	+		GFF5311	0.34	+0.8
5,302,598	+		GFF5311	0.34	-0.1
5,302,598	+		GFF5311	0.34	+0.2
5,302,598	+		GFF5311	0.34	-1.0
5,302,606	-		GFF5311	0.35	+0.8
5,302,606	-		GFF5311	0.35	+0.2
5,302,625	+		GFF5311	0.37	-0.1
5,302,625	+		GFF5311	0.37	+0.5
5,302,630	+		GFF5311	0.37	-0.4
5,302,633	-		GFF5311	0.38	+0.5
5,302,638	-		GFF5311	0.38	+1.0
5,302,638	-		GFF5311	0.38	-0.5
5,302,638	-		GFF5311	0.38	-2.2
5,302,655	-		GFF5311	0.40	-0.2
5,302,710	+		GFF5311	0.45	+1.1
5,302,727	+		GFF5311	0.46	-0.9
5,302,743	-		GFF5311	0.47	+1.4
5,302,780	+		GFF5311	0.51	+0.3
5,302,786	+		GFF5311	0.51	+1.2
5,302,788	-		GFF5311	0.51	-0.3
5,302,796	-		GFF5311	0.52	-0.8
5,302,864	+		GFF5311	0.58	+0.8
5,302,873	+		GFF5311	0.59	+1.6
5,302,898	-		GFF5311	0.61	-0.1
5,302,909	-		GFF5311	0.62	-0.3
5,302,955	+		GFF5311	0.66	-1.9
5,302,957	-		GFF5311	0.67	+0.2
5,303,014	+		GFF5311	0.72	-1.6
5,303,072	-		GFF5311	0.77	-0.2
5,303,102	+		GFF5311	0.80	-0.9
5,303,109	-		GFF5311	0.80	+1.0
5,303,115	+		GFF5311	0.81	+1.2
5,303,115	+		GFF5311	0.81	+0.5
5,303,115	+		GFF5311	0.81	+1.4
5,303,115	+		GFF5311	0.81	-1.4
5,303,131	+		GFF5311	0.82	-0.1
5,303,133	-		GFF5311	0.82	-0.9
5,303,151	-		GFF5311	0.84	+0.7
5,303,156	+		GFF5311	0.84	-0.5
5,303,156	+		GFF5311	0.84	-0.1
5,303,208	+		GFF5311	0.89	-0.0
5,303,215	+		GFF5311	0.90	-0.2
5,303,237	+				+0.9
5,303,237	+				+0.2
5,303,242	+				-1.7
5,303,242	+				+0.6
5,303,253	+				-0.4
5,303,263	+				-0.9
5,303,266	-				-0.5
5,303,288	+				-1.1
5,303,369	-				+0.4
5,303,413	+				+0.3
5,303,420	+				-0.4
5,303,432	+				-0.2
5,303,432	+				+0.2
5,303,440	-				+0.4
5,303,440	-				-0.3
5,303,441	+				-1.8
5,303,527	-				-0.6
5,303,551	+				+1.2
5,303,551	+				+0.4
5,303,551	+				+0.4
5,303,551	+				+2.1
5,303,551	+				-0.6
5,303,551	+				-2.2
5,303,551	+				+0.5
5,303,551	+				-0.5
5,303,551	+				+0.7
5,303,551	+				-0.2
5,303,551	+				-0.4
5,303,551	+				+1.2
5,303,551	+				+0.6
5,303,551	+				+0.9
5,303,551	+				+0.7
5,303,551	+				+0.2
5,303,554	-				+0.6
5,303,559	-				-1.4
5,303,559	-				+0.6
5,303,559	-				-0.5
5,303,559	-				-1.5
5,303,559	-				-0.7
5,303,559	-				+0.2
5,303,559	-				+0.7
5,303,559	-				+1.5
5,303,559	-				+1.7
5,303,569	-				+1.6
5,303,570	+				-0.1
5,303,573	-				-0.3
5,303,578	-				-1.6
5,303,578	-				+0.2
5,303,598	+				+1.7
5,303,606	-				+1.3
5,303,606	-				+0.4
5,303,621	+				+0.2
5,303,621	+				-0.1
5,303,631	+				-0.6
5,303,631	+				+0.1
5,303,639	-				-0.4
5,303,654	-				-1.8
5,303,666	+				+1.4
5,303,667	+				+0.1
5,303,667	+				-1.5
5,303,667	+				+0.4
5,303,667	+				-0.4
5,303,667	+				-0.5
5,303,667	+				-2.4
5,303,675	-				-0.7
5,303,675	-				+0.9
5,303,675	-				-0.4
5,303,677	+				+0.1
5,303,701	-				-0.6
5,303,709	-				+1.4
5,303,711	+				+0.2
5,303,711	+				+0.2
5,303,732	+				-0.8
5,303,732	+				-1.0
5,303,732	+				-0.6
5,303,734	-				-1.6
5,303,740	-				+0.2
5,303,740	-				+0.7
5,303,740	-				+0.7
5,303,740	-				+0.7
5,303,740	-				-1.8
5,303,740	-				-2.1
5,303,750	+				-0.9
5,303,755	-				-0.3
5,303,771	+				+1.2
5,303,780	-				-0.8
5,303,781	-				+0.8
5,303,781	-				-0.2
5,303,805	+				+0.2
5,303,815	+				-0.8
5,303,815	+				-0.1
5,303,820	+				-2.1
5,303,820	+				+0.0
5,303,820	+				-0.2
5,303,823	-				-0.9
5,303,823	-				+0.2
5,303,828	-				+0.5
5,303,829	+				+0.3
5,303,856	+				+0.2
5,303,856	-				-0.6
5,303,859	-				-0.8
5,303,877	+				-0.2
5,303,893	+				-0.7
5,303,895	-				+1.3
5,303,929	+				-0.1
5,303,929	+				+1.5
5,303,929	+				+0.6
5,303,937	-				-1.6
5,303,982	-				-0.8
5,304,010	+				+1.2
5,304,018	-				-0.2
5,304,081	+				-1.2
5,304,104	+				-0.1
5,304,124	-				-2.6
5,304,154	+				+0.7
5,304,221	+				+0.5
5,304,229	-				-0.0
5,304,241	+				+0.4
5,304,244	-				-0.3
5,304,298	+				-0.4
5,304,298	+				-0.5
5,304,301	+				+0.5
5,304,301	+				+1.5
5,304,301	+				-1.9
5,304,301	+				-1.3
5,304,301	+				+0.0
5,304,306	-				+0.5