Strain Fitness in Sphingobium sp. HT1-2 around GFF5253

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5251 and GFF5252 overlap by 22 nucleotidesGFF5252 and GFF5253 are separated by 65 nucleotidesGFF5253 and GFF5254 overlap by 8 nucleotidesGFF5254 and GFF5255 are separated by 168 nucleotides GFF5251 - Death on curing protein, Doc toxin, at 5,245,969 to 5,246,274 GFF5251 GFF5252 - Prevent host death protein, Phd antitoxin, at 5,246,253 to 5,246,525 GFF5252 GFF5253 - hypothetical protein, at 5,246,591 to 5,247,034 GFF5253 GFF5254 - Mobilization protein, at 5,247,027 to 5,247,302 GFF5254 GFF5255 - Mobilization protein MobA @ Conjugal transfer protein TraA, at 5,247,471 to 5,248,682 GFF5255 Position (kb) 5246 5247 5248Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 5245.967 kb on + strandat 5246.001 kb on + strand, within GFF5251at 5246.001 kb on + strand, within GFF5251at 5246.002 kb on + strand, within GFF5251at 5246.002 kb on + strand, within GFF5251at 5246.002 kb on + strand, within GFF5251at 5246.072 kb on + strand, within GFF5251at 5246.094 kb on + strand, within GFF5251at 5246.141 kb on + strand, within GFF5251at 5246.236 kb on + strand, within GFF5251at 5246.282 kb on + strand, within GFF5252at 5246.409 kb on + strand, within GFF5252at 5246.419 kb on + strand, within GFF5252at 5246.483 kb on - strand, within GFF5252at 5246.589 kb on + strandat 5246.607 kb on - strandat 5246.628 kb on + strandat 5246.642 kb on - strand, within GFF5253at 5246.674 kb on + strand, within GFF5253at 5246.695 kb on + strand, within GFF5253at 5246.711 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.729 kb on + strand, within GFF5253at 5246.737 kb on - strand, within GFF5253at 5246.740 kb on + strand, within GFF5253at 5246.747 kb on - strand, within GFF5253at 5246.820 kb on + strand, within GFF5253at 5246.960 kb on - strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.962 kb on + strand, within GFF5253at 5246.970 kb on - strand, within GFF5253at 5246.970 kb on - strand, within GFF5253at 5246.970 kb on - strand, within GFF5253at 5246.970 kb on - strand, within GFF5253at 5246.970 kb on - strand, within GFF5253at 5246.983 kb on + strand, within GFF5253at 5247.017 kb on + strandat 5247.038 kb on - strandat 5247.055 kb on + strand, within GFF5254at 5247.055 kb on + strand, within GFF5254at 5247.063 kb on + strand, within GFF5254at 5247.070 kb on + strand, within GFF5254at 5247.081 kb on - strand, within GFF5254at 5247.135 kb on + strand, within GFF5254at 5247.170 kb on + strand, within GFF5254at 5247.193 kb on + strand, within GFF5254at 5247.201 kb on + strand, within GFF5254at 5247.201 kb on + strand, within GFF5254at 5247.201 kb on + strand, within GFF5254at 5247.214 kb on - strand, within GFF5254at 5247.250 kb on + strand, within GFF5254at 5247.257 kb on - strand, within GFF5254at 5247.257 kb on - strand, within GFF5254at 5247.539 kb on + strandat 5247.575 kb on + strandat 5247.590 kb on + strandat 5247.625 kb on + strand, within GFF5255at 5247.625 kb on + strand, within GFF5255at 5247.650 kb on + strand, within GFF5255at 5247.778 kb on + strand, within GFF5255at 5247.778 kb on + strand, within GFF5255at 5247.778 kb on + strand, within GFF5255at 5247.778 kb on + strand, within GFF5255at 5247.778 kb on + strand, within GFF5255at 5247.788 kb on + strand, within GFF5255at 5247.798 kb on + strand, within GFF5255at 5247.814 kb on + strand, within GFF5255at 5247.820 kb on + strand, within GFF5255at 5247.852 kb on + strand, within GFF5255at 5247.884 kb on - strand, within GFF5255at 5247.898 kb on - strand, within GFF5255at 5247.922 kb on + strand, within GFF5255at 5247.929 kb on - strand, within GFF5255at 5247.937 kb on + strand, within GFF5255at 5247.964 kb on + strand, within GFF5255at 5247.968 kb on + strand, within GFF5255at 5247.969 kb on + strand, within GFF5255at 5248.011 kb on + strand, within GFF5255

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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5,245,967 + -3.2
5,246,001 + GFF5251 0.10 +0.5
5,246,001 + GFF5251 0.10 -0.1
5,246,002 + GFF5251 0.11 -1.4
5,246,002 + GFF5251 0.11 -0.2
5,246,002 + GFF5251 0.11 -0.6
5,246,072 + GFF5251 0.34 -2.9
5,246,094 + GFF5251 0.41 -0.7
5,246,141 + GFF5251 0.56 +0.1
5,246,236 + GFF5251 0.87 -0.9
5,246,282 + GFF5252 0.11 -1.6
5,246,409 + GFF5252 0.57 -1.1
5,246,419 + GFF5252 0.61 -1.1
5,246,483 - GFF5252 0.84 -2.1
5,246,589 + -1.6
5,246,607 - -2.2
5,246,628 + -1.4
5,246,642 - GFF5253 0.11 +0.3
5,246,674 + GFF5253 0.19 -0.6
5,246,695 + GFF5253 0.23 -0.8
5,246,711 + GFF5253 0.27 -0.9
5,246,729 + GFF5253 0.31 -0.4
5,246,729 + GFF5253 0.31 -1.8
5,246,729 + GFF5253 0.31 -1.5
5,246,729 + GFF5253 0.31 -1.5
5,246,729 + GFF5253 0.31 -2.2
5,246,737 - GFF5253 0.33 +0.9
5,246,740 + GFF5253 0.34 -3.3
5,246,747 - GFF5253 0.35 -0.9
5,246,820 + GFF5253 0.52 -0.5
5,246,960 - GFF5253 0.83 -1.5
5,246,962 + GFF5253 0.84 -2.1
5,246,962 + GFF5253 0.84 -1.8
5,246,962 + GFF5253 0.84 -1.9
5,246,962 + GFF5253 0.84 -0.0
5,246,962 + GFF5253 0.84 -0.9
5,246,962 + GFF5253 0.84 -2.4
5,246,962 + GFF5253 0.84 -1.1
5,246,962 + GFF5253 0.84 -1.8
5,246,962 + GFF5253 0.84 -0.1
5,246,962 + GFF5253 0.84 -3.3
5,246,970 - GFF5253 0.85 +0.9
5,246,970 - GFF5253 0.85 -1.1
5,246,970 - GFF5253 0.85 -2.8
5,246,970 - GFF5253 0.85 +0.3
5,246,970 - GFF5253 0.85 -1.4
5,246,983 + GFF5253 0.88 +1.2
5,247,017 + -0.7
5,247,038 - -2.8
5,247,055 + GFF5254 0.10 -2.0
5,247,055 + GFF5254 0.10 -2.5
5,247,063 + GFF5254 0.13 -1.5
5,247,070 + GFF5254 0.16 -1.1
5,247,081 - GFF5254 0.20 -1.7
5,247,135 + GFF5254 0.39 -0.0
5,247,170 + GFF5254 0.52 -0.8
5,247,193 + GFF5254 0.60 -1.7
5,247,201 + GFF5254 0.63 +1.9
5,247,201 + GFF5254 0.63 -1.4
5,247,201 + GFF5254 0.63 -1.2
5,247,214 - GFF5254 0.68 -0.7
5,247,250 + GFF5254 0.81 -1.3
5,247,257 - GFF5254 0.83 -1.8
5,247,257 - GFF5254 0.83 -1.5
5,247,539 + +0.2
5,247,575 + -1.8
5,247,590 + -0.1
5,247,625 + GFF5255 0.13 -0.7
5,247,625 + GFF5255 0.13 -0.9
5,247,650 + GFF5255 0.15 -0.4
5,247,778 + GFF5255 0.25 -1.1
5,247,778 + GFF5255 0.25 -1.4
5,247,778 + GFF5255 0.25 +0.2
5,247,778 + GFF5255 0.25 -4.1
5,247,778 + GFF5255 0.25 -0.5
5,247,788 + GFF5255 0.26 +0.5
5,247,798 + GFF5255 0.27 -2.8
5,247,814 + GFF5255 0.28 -1.1
5,247,820 + GFF5255 0.29 +0.7
5,247,852 + GFF5255 0.31 -0.8
5,247,884 - GFF5255 0.34 -0.1
5,247,898 - GFF5255 0.35 -0.9
5,247,922 + GFF5255 0.37 -1.5
5,247,929 - GFF5255 0.38 -0.4
5,247,937 + GFF5255 0.38 -0.4
5,247,964 + GFF5255 0.41 -2.4
5,247,968 + GFF5255 0.41 +1.9
5,247,969 + GFF5255 0.41 -0.4
5,248,011 + GFF5255 0.45 +0.3

Or see this region's nucleotide sequence