Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5245 and GFF5246 are separated by 50 nucleotides GFF5246 and GFF5247 are separated by 223 nucleotides GFF5247 and GFF5248 are separated by 65 nucleotides GFF5248 and GFF5249 are separated by 3 nucleotides GFF5249 and GFF5250 are separated by 35 nucleotides
GFF5245 - Inner membrane component of tripartite multidrug resistance system, at 5,240,817 to 5,241,965
GFF5245
GFF5246 - Transposase for insertion sequences IS1326/IS1353, at 5,242,016 to 5,242,285
GFF5246
GFF5247 - hypothetical protein, at 5,242,509 to 5,243,966
GFF5247
GFF5248 - hypothetical protein, at 5,244,032 to 5,244,310
GFF5248
GFF5249 - hypothetical protein, at 5,244,314 to 5,244,712
GFF5249
GFF5250 - Replication protein, at 5,244,748 to 5,245,407
GFF5250
Position (kb) 5242
5243
5244 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5241.522 kb on + strand, within GFF5245 at 5241.522 kb on + strand, within GFF5245 at 5241.522 kb on + strand, within GFF5245 at 5241.522 kb on + strand, within GFF5245 at 5241.522 kb on + strand, within GFF5245 at 5241.530 kb on - strand, within GFF5245 at 5241.530 kb on - strand, within GFF5245 at 5241.530 kb on - strand, within GFF5245 at 5241.562 kb on + strand, within GFF5245 at 5241.578 kb on - strand, within GFF5245 at 5241.611 kb on - strand, within GFF5245 at 5241.655 kb on + strand, within GFF5245 at 5241.708 kb on + strand, within GFF5245 at 5241.708 kb on + strand, within GFF5245 at 5241.708 kb on + strand, within GFF5245 at 5241.708 kb on + strand, within GFF5245 at 5241.708 kb on + strand, within GFF5245 at 5241.708 kb on + strand, within GFF5245 at 5241.744 kb on + strand, within GFF5245 at 5241.753 kb on + strand, within GFF5245 at 5241.773 kb on + strand, within GFF5245 at 5241.778 kb on + strand, within GFF5245 at 5241.798 kb on + strand, within GFF5245 at 5241.889 kb on - strand at 5241.889 kb on - strand at 5241.933 kb on - strand at 5241.933 kb on - strand at 5242.243 kb on + strand, within GFF5246 at 5242.266 kb on - strand at 5242.266 kb on - strand at 5242.266 kb on - strand at 5242.266 kb on - strand at 5242.266 kb on - strand at 5242.266 kb on - strand at 5242.266 kb on - strand at 5242.266 kb on - strand at 5242.266 kb on - strand at 5242.266 kb on - strand at 5242.266 kb on - strand at 5242.266 kb on - strand at 5242.266 kb on - strand at 5242.266 kb on - strand at 5242.418 kb on + strand at 5242.424 kb on + strand at 5242.425 kb on + strand at 5242.451 kb on + strand at 5242.497 kb on + strand at 5242.498 kb on - strand at 5242.520 kb on - strand at 5242.524 kb on - strand at 5242.524 kb on - strand at 5242.526 kb on + strand at 5242.527 kb on - strand at 5242.613 kb on + strand at 5242.613 kb on + strand at 5242.613 kb on + strand at 5242.623 kb on + strand at 5242.623 kb on + strand at 5242.628 kb on + strand at 5242.629 kb on + strand at 5242.632 kb on - strand at 5242.648 kb on - strand at 5242.655 kb on + strand, within GFF5247 at 5242.655 kb on + strand, within GFF5247 at 5242.667 kb on + strand, within GFF5247 at 5242.667 kb on + strand, within GFF5247 at 5242.673 kb on + strand, within GFF5247 at 5242.684 kb on + strand, within GFF5247 at 5242.689 kb on + strand, within GFF5247 at 5242.696 kb on + strand, within GFF5247 at 5242.696 kb on + strand, within GFF5247 at 5242.699 kb on - strand, within GFF5247 at 5242.724 kb on - strand, within GFF5247 at 5242.747 kb on - strand, within GFF5247 at 5242.772 kb on + strand, within GFF5247 at 5242.780 kb on - strand, within GFF5247 at 5242.780 kb on - strand, within GFF5247 at 5242.796 kb on + strand, within GFF5247 at 5242.799 kb on - strand, within GFF5247 at 5242.799 kb on - strand, within GFF5247 at 5242.867 kb on + strand, within GFF5247 at 5242.875 kb on - strand, within GFF5247 at 5242.903 kb on + strand, within GFF5247 at 5242.903 kb on + strand, within GFF5247 at 5242.911 kb on - strand, within GFF5247 at 5242.913 kb on + strand, within GFF5247 at 5242.942 kb on - strand, within GFF5247 at 5242.954 kb on - strand, within GFF5247 at 5242.976 kb on - strand, within GFF5247 at 5243.003 kb on + strand, within GFF5247 at 5243.003 kb on + strand, within GFF5247 at 5243.003 kb on + strand, within GFF5247 at 5243.003 kb on + strand, within GFF5247 at 5243.009 kb on + strand, within GFF5247 at 5243.011 kb on - strand, within GFF5247 at 5243.011 kb on - strand, within GFF5247 at 5243.011 kb on - strand, within GFF5247 at 5243.011 kb on - strand, within GFF5247 at 5243.011 kb on - strand, within GFF5247 at 5243.011 kb on - strand, within GFF5247 at 5243.011 kb on - strand, within GFF5247 at 5243.011 kb on - strand, within GFF5247 at 5243.011 kb on - strand, within GFF5247 at 5243.011 kb on - strand, within GFF5247 at 5243.011 kb on - strand, within GFF5247 at 5243.011 kb on - strand, within GFF5247 at 5243.028 kb on + strand, within GFF5247 at 5243.091 kb on + strand, within GFF5247 at 5243.097 kb on - strand, within GFF5247 at 5243.099 kb on - strand, within GFF5247 at 5243.157 kb on - strand, within GFF5247 at 5243.166 kb on - strand, within GFF5247 at 5243.176 kb on - strand, within GFF5247 at 5243.210 kb on - strand, within GFF5247 at 5243.278 kb on + strand, within GFF5247 at 5243.278 kb on + strand, within GFF5247 at 5243.278 kb on + strand, within GFF5247 at 5243.288 kb on + strand, within GFF5247 at 5243.384 kb on - strand, within GFF5247 at 5243.386 kb on + strand, within GFF5247 at 5243.394 kb on - strand, within GFF5247 at 5243.401 kb on - strand, within GFF5247 at 5243.446 kb on + strand, within GFF5247 at 5243.446 kb on + strand, within GFF5247 at 5243.446 kb on + strand, within GFF5247 at 5243.447 kb on + strand, within GFF5247 at 5243.447 kb on + strand, within GFF5247 at 5243.448 kb on + strand, within GFF5247 at 5243.454 kb on - strand, within GFF5247 at 5243.455 kb on - strand, within GFF5247 at 5243.456 kb on - strand, within GFF5247 at 5243.475 kb on - strand, within GFF5247 at 5243.486 kb on - strand, within GFF5247 at 5243.486 kb on - strand, within GFF5247 at 5243.486 kb on - strand, within GFF5247 at 5243.488 kb on - strand, within GFF5247 at 5243.564 kb on + strand, within GFF5247 at 5243.571 kb on - strand, within GFF5247 at 5243.631 kb on + strand, within GFF5247 at 5243.631 kb on + strand, within GFF5247 at 5243.631 kb on + strand, within GFF5247 at 5243.631 kb on + strand, within GFF5247 at 5243.634 kb on + strand, within GFF5247 at 5243.639 kb on - strand, within GFF5247 at 5243.639 kb on - strand, within GFF5247 at 5243.650 kb on - strand, within GFF5247 at 5243.664 kb on + strand, within GFF5247 at 5243.696 kb on + strand, within GFF5247 at 5243.699 kb on - strand, within GFF5247 at 5243.701 kb on - strand, within GFF5247 at 5243.701 kb on - strand, within GFF5247 at 5243.701 kb on - strand, within GFF5247 at 5243.724 kb on - strand, within GFF5247 at 5243.729 kb on - strand, within GFF5247 at 5243.732 kb on + strand, within GFF5247 at 5243.763 kb on - strand, within GFF5247 at 5243.765 kb on - strand, within GFF5247 at 5243.811 kb on + strand, within GFF5247 at 5243.838 kb on + strand at 5243.846 kb on - strand at 5243.856 kb on + strand at 5243.856 kb on + strand at 5243.856 kb on + strand at 5243.864 kb on - strand at 5243.883 kb on - strand at 5243.884 kb on + strand at 5243.884 kb on + strand at 5243.884 kb on + strand at 5243.884 kb on + strand at 5243.897 kb on - strand at 5243.897 kb on - strand at 5243.899 kb on + strand at 5243.902 kb on - strand at 5243.920 kb on + strand at 5244.021 kb on + strand at 5244.040 kb on + strand at 5244.172 kb on - strand, within GFF5248 at 5244.182 kb on - strand, within GFF5248 at 5244.196 kb on + strand, within GFF5248 at 5244.196 kb on + strand, within GFF5248 at 5244.199 kb on - strand, within GFF5248 at 5244.199 kb on - strand, within GFF5248 at 5244.199 kb on - strand, within GFF5248 at 5244.201 kb on + strand, within GFF5248 at 5244.204 kb on - strand, within GFF5248 at 5244.204 kb on - strand, within GFF5248 at 5244.209 kb on - strand, within GFF5248 at 5244.211 kb on + strand, within GFF5248 at 5244.217 kb on - strand, within GFF5248 at 5244.219 kb on - strand, within GFF5248 at 5244.219 kb on - strand, within GFF5248 at 5244.219 kb on - strand, within GFF5248 at 5244.272 kb on - strand, within GFF5248 at 5244.280 kb on - strand, within GFF5248 at 5244.378 kb on + strand, within GFF5249 at 5244.384 kb on + strand, within GFF5249 at 5244.384 kb on + strand, within GFF5249 at 5244.541 kb on - strand, within GFF5249 at 5244.647 kb on - strand, within GFF5249 at 5244.831 kb on + strand, within GFF5250 at 5244.851 kb on + strand, within GFF5250 at 5244.851 kb on + strand, within GFF5250 at 5244.851 kb on + strand, within GFF5250 at 5244.851 kb on + strand, within GFF5250 at 5244.891 kb on - strand, within GFF5250 at 5244.922 kb on + strand, within GFF5250
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 5,241,522 + GFF5245 0.61 -0.3 5,241,522 + GFF5245 0.61 -0.2 5,241,522 + GFF5245 0.61 +0.4 5,241,522 + GFF5245 0.61 +0.1 5,241,522 + GFF5245 0.61 +0.8 5,241,530 - GFF5245 0.62 +0.6 5,241,530 - GFF5245 0.62 +0.4 5,241,530 - GFF5245 0.62 +0.4 5,241,562 + GFF5245 0.65 +0.6 5,241,578 - GFF5245 0.66 +1.4 5,241,611 - GFF5245 0.69 -0.1 5,241,655 + GFF5245 0.73 +0.4 5,241,708 + GFF5245 0.78 +0.6 5,241,708 + GFF5245 0.78 -1.8 5,241,708 + GFF5245 0.78 +1.3 5,241,708 + GFF5245 0.78 +0.2 5,241,708 + GFF5245 0.78 -1.1 5,241,708 + GFF5245 0.78 -1.6 5,241,744 + GFF5245 0.81 +1.1 5,241,753 + GFF5245 0.81 +0.9 5,241,773 + GFF5245 0.83 -1.0 5,241,778 + GFF5245 0.84 +0.6 5,241,798 + GFF5245 0.85 +0.7 5,241,889 - -0.6 5,241,889 - +0.3 5,241,933 - +0.8 5,241,933 - -0.6 5,242,243 + GFF5246 0.84 -0.4 5,242,266 - -0.3 5,242,266 - -3.3 5,242,266 - +0.1 5,242,266 - -0.2 5,242,266 - -0.6 5,242,266 - +0.4 5,242,266 - +0.1 5,242,266 - -0.1 5,242,266 - -1.4 5,242,266 - +0.8 5,242,266 - +0.3 5,242,266 - -0.7 5,242,266 - -0.5 5,242,266 - -1.6 5,242,418 + -1.7 5,242,424 + -0.6 5,242,425 + -0.3 5,242,451 + -0.2 5,242,497 + -2.6 5,242,498 - -1.9 5,242,520 - -1.1 5,242,524 - -2.4 5,242,524 - -1.8 5,242,526 + -1.4 5,242,527 - -1.4 5,242,613 + -1.8 5,242,613 + -0.1 5,242,613 + -0.8 5,242,623 + -2.2 5,242,623 + -1.3 5,242,628 + -2.0 5,242,629 + -1.2 5,242,632 - -2.4 5,242,648 - -1.4 5,242,655 + GFF5247 0.10 -1.7 5,242,655 + GFF5247 0.10 -2.1 5,242,667 + GFF5247 0.11 +1.0 5,242,667 + GFF5247 0.11 -2.9 5,242,673 + GFF5247 0.11 +0.3 5,242,684 + GFF5247 0.12 -1.1 5,242,689 + GFF5247 0.12 -1.3 5,242,696 + GFF5247 0.13 -0.8 5,242,696 + GFF5247 0.13 -2.2 5,242,699 - GFF5247 0.13 -0.4 5,242,724 - GFF5247 0.15 -1.2 5,242,747 - GFF5247 0.16 +1.2 5,242,772 + GFF5247 0.18 -1.8 5,242,780 - GFF5247 0.19 -2.0 5,242,780 - GFF5247 0.19 -1.3 5,242,796 + GFF5247 0.20 -0.3 5,242,799 - GFF5247 0.20 -1.9 5,242,799 - GFF5247 0.20 -2.2 5,242,867 + GFF5247 0.25 -0.1 5,242,875 - GFF5247 0.25 -0.1 5,242,903 + GFF5247 0.27 -2.3 5,242,903 + GFF5247 0.27 -1.1 5,242,911 - GFF5247 0.28 -0.8 5,242,913 + GFF5247 0.28 -0.5 5,242,942 - GFF5247 0.30 -0.6 5,242,954 - GFF5247 0.31 -0.4 5,242,976 - GFF5247 0.32 -0.4 5,243,003 + GFF5247 0.34 -3.0 5,243,003 + GFF5247 0.34 -0.8 5,243,003 + GFF5247 0.34 -1.4 5,243,003 + GFF5247 0.34 -2.4 5,243,009 + GFF5247 0.34 -1.0 5,243,011 - GFF5247 0.34 +1.6 5,243,011 - GFF5247 0.34 +0.2 5,243,011 - GFF5247 0.34 +0.5 5,243,011 - GFF5247 0.34 -0.7 5,243,011 - GFF5247 0.34 -0.8 5,243,011 - GFF5247 0.34 -1.2 5,243,011 - GFF5247 0.34 +0.1 5,243,011 - GFF5247 0.34 -0.8 5,243,011 - GFF5247 0.34 -0.8 5,243,011 - GFF5247 0.34 -1.6 5,243,011 - GFF5247 0.34 -0.4 5,243,011 - GFF5247 0.34 -0.2 5,243,028 + GFF5247 0.36 -0.4 5,243,091 + GFF5247 0.40 -0.8 5,243,097 - GFF5247 0.40 -1.1 5,243,099 - GFF5247 0.40 -1.7 5,243,157 - GFF5247 0.44 -0.7 5,243,166 - GFF5247 0.45 -0.7 5,243,176 - GFF5247 0.46 -0.8 5,243,210 - GFF5247 0.48 -0.9 5,243,278 + GFF5247 0.53 -1.1 5,243,278 + GFF5247 0.53 -1.2 5,243,278 + GFF5247 0.53 -1.6 5,243,288 + GFF5247 0.53 -0.6 5,243,384 - GFF5247 0.60 -1.4 5,243,386 + GFF5247 0.60 -1.1 5,243,394 - GFF5247 0.61 -2.4 5,243,401 - GFF5247 0.61 -2.0 5,243,446 + GFF5247 0.64 -1.7 5,243,446 + GFF5247 0.64 -0.1 5,243,446 + GFF5247 0.64 -0.7 5,243,447 + GFF5247 0.64 -0.4 5,243,447 + GFF5247 0.64 -2.9 5,243,448 + GFF5247 0.64 -3.3 5,243,454 - GFF5247 0.65 -2.1 5,243,455 - GFF5247 0.65 -3.1 5,243,456 - GFF5247 0.65 -1.2 5,243,475 - GFF5247 0.66 -0.1 5,243,486 - GFF5247 0.67 -0.8 5,243,486 - GFF5247 0.67 -2.1 5,243,486 - GFF5247 0.67 -2.5 5,243,488 - GFF5247 0.67 +0.4 5,243,564 + GFF5247 0.72 +0.6 5,243,571 - GFF5247 0.73 -2.4 5,243,631 + GFF5247 0.77 -2.9 5,243,631 + GFF5247 0.77 -1.9 5,243,631 + GFF5247 0.77 +2.7 5,243,631 + GFF5247 0.77 -0.1 5,243,634 + GFF5247 0.77 -1.6 5,243,639 - GFF5247 0.78 -1.7 5,243,639 - GFF5247 0.78 -1.5 5,243,650 - GFF5247 0.78 -1.4 5,243,664 + GFF5247 0.79 -3.3 5,243,696 + GFF5247 0.81 +1.1 5,243,699 - GFF5247 0.82 +0.6 5,243,701 - GFF5247 0.82 -3.1 5,243,701 - GFF5247 0.82 +0.9 5,243,701 - GFF5247 0.82 -0.9 5,243,724 - GFF5247 0.83 -1.6 5,243,729 - GFF5247 0.84 -0.9 5,243,732 + GFF5247 0.84 -0.9 5,243,763 - GFF5247 0.86 +0.1 5,243,765 - GFF5247 0.86 -1.3 5,243,811 + GFF5247 0.89 -0.4 5,243,838 + -0.7 5,243,846 - +0.5 5,243,856 + -0.3 5,243,856 + -0.4 5,243,856 + +0.1 5,243,864 - -1.9 5,243,883 - -0.1 5,243,884 + +0.3 5,243,884 + -1.4 5,243,884 + -2.5 5,243,884 + +0.2 5,243,897 - -0.8 5,243,897 - -1.9 5,243,899 + -0.1 5,243,902 - -1.8 5,243,920 + -1.3 5,244,021 + -0.4 5,244,040 + -1.9 5,244,172 - GFF5248 0.50 -1.0 5,244,182 - GFF5248 0.54 -2.4 5,244,196 + GFF5248 0.59 +0.9 5,244,196 + GFF5248 0.59 -0.9 5,244,199 - GFF5248 0.60 -1.9 5,244,199 - GFF5248 0.60 +0.0 5,244,199 - GFF5248 0.60 -1.9 5,244,201 + GFF5248 0.61 -2.5 5,244,204 - GFF5248 0.62 -0.7 5,244,204 - GFF5248 0.62 -1.1 5,244,209 - GFF5248 0.63 -0.5 5,244,211 + GFF5248 0.64 -2.8 5,244,217 - GFF5248 0.66 +0.9 5,244,219 - GFF5248 0.67 -0.7 5,244,219 - GFF5248 0.67 -2.2 5,244,219 - GFF5248 0.67 +0.1 5,244,272 - GFF5248 0.86 +0.8 5,244,280 - GFF5248 0.89 -1.7 5,244,378 + GFF5249 0.16 +0.5 5,244,384 + GFF5249 0.18 -0.7 5,244,384 + GFF5249 0.18 -0.9 5,244,541 - GFF5249 0.57 -1.1 5,244,647 - GFF5249 0.83 -2.6 5,244,831 + GFF5250 0.13 -2.3 5,244,851 + GFF5250 0.16 -1.6 5,244,851 + GFF5250 0.16 -0.4 5,244,851 + GFF5250 0.16 -0.9 5,244,851 + GFF5250 0.16 -0.7 5,244,891 - GFF5250 0.22 -0.9 5,244,922 + GFF5250 0.26 -0.9
Or see this region's nucleotide sequence