Strain Fitness in Sphingobium sp. HT1-2 around GFF5241

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF5240 and GFF5241 are separated by 531 nucleotidesGFF5241 and GFF5242 are separated by 49 nucleotides GFF5240 - hypothetical protein, at 5,235,412 to 5,236,086 GFF5240 GFF5241 - Transcriptional regulator, AcrR family, at 5,236,618 to 5,237,184 GFF5241 GFF5242 - Quinone oxidoreductase (EC 1.6.5.5), at 5,237,234 to 5,238,202 GFF5242 Position (kb) 5236 5237 5238Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 5235.684 kb on + strand, within GFF5240at 5235.684 kb on + strand, within GFF5240at 5235.684 kb on + strand, within GFF5240at 5235.684 kb on + strand, within GFF5240at 5235.692 kb on - strand, within GFF5240at 5235.692 kb on - strand, within GFF5240at 5235.692 kb on - strand, within GFF5240at 5235.692 kb on - strand, within GFF5240at 5235.697 kb on - strand, within GFF5240at 5235.697 kb on - strand, within GFF5240at 5235.730 kb on + strand, within GFF5240at 5235.857 kb on - strand, within GFF5240at 5235.857 kb on - strand, within GFF5240at 5235.877 kb on - strand, within GFF5240at 5235.907 kb on + strand, within GFF5240at 5235.946 kb on + strand, within GFF5240at 5235.946 kb on + strand, within GFF5240at 5236.022 kb on + strandat 5236.130 kb on + strandat 5236.179 kb on - strandat 5236.179 kb on - strandat 5236.250 kb on + strandat 5236.254 kb on - strandat 5236.263 kb on + strandat 5236.263 kb on + strandat 5236.271 kb on - strandat 5236.310 kb on - strandat 5236.331 kb on - strandat 5236.331 kb on - strandat 5236.338 kb on - strandat 5236.366 kb on + strandat 5236.366 kb on + strandat 5236.366 kb on - strandat 5236.374 kb on - strandat 5236.432 kb on - strandat 5236.444 kb on - strandat 5236.450 kb on + strandat 5236.456 kb on + strandat 5236.456 kb on + strandat 5236.492 kb on - strandat 5236.607 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.651 kb on + strandat 5236.659 kb on - strandat 5236.659 kb on - strandat 5236.659 kb on - strandat 5236.659 kb on - strandat 5236.659 kb on - strandat 5236.659 kb on - strandat 5236.703 kb on - strand, within GFF5241at 5236.787 kb on - strand, within GFF5241at 5236.839 kb on + strand, within GFF5241at 5236.856 kb on + strand, within GFF5241at 5236.890 kb on + strand, within GFF5241at 5236.913 kb on + strand, within GFF5241at 5236.913 kb on + strand, within GFF5241at 5236.924 kb on + strand, within GFF5241at 5236.938 kb on - strand, within GFF5241at 5236.971 kb on - strand, within GFF5241at 5236.978 kb on + strand, within GFF5241at 5236.978 kb on + strand, within GFF5241at 5236.978 kb on + strand, within GFF5241at 5236.983 kb on + strand, within GFF5241at 5236.983 kb on + strand, within GFF5241at 5236.983 kb on + strand, within GFF5241at 5236.986 kb on - strand, within GFF5241at 5236.986 kb on - strand, within GFF5241at 5236.986 kb on - strand, within GFF5241at 5236.986 kb on - strand, within GFF5241at 5236.990 kb on + strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5236.991 kb on - strand, within GFF5241at 5237.017 kb on - strand, within GFF5241at 5237.031 kb on + strand, within GFF5241at 5237.039 kb on - strand, within GFF5241at 5237.039 kb on - strand, within GFF5241at 5237.039 kb on - strand, within GFF5241at 5237.039 kb on - strand, within GFF5241at 5237.039 kb on - strand, within GFF5241at 5237.044 kb on + strand, within GFF5241at 5237.143 kb on - strandat 5237.148 kb on - strandat 5237.165 kb on - strandat 5237.169 kb on - strandat 5237.241 kb on + strandat 5237.243 kb on + strandat 5237.243 kb on + strandat 5237.245 kb on + strandat 5237.281 kb on - strandat 5237.301 kb on - strandat 5237.326 kb on + strandat 5237.326 kb on + strandat 5237.334 kb on - strand, within GFF5242at 5237.347 kb on + strand, within GFF5242at 5237.360 kb on - strand, within GFF5242at 5237.410 kb on + strand, within GFF5242at 5237.433 kb on + strand, within GFF5242at 5237.450 kb on + strand, within GFF5242at 5237.458 kb on + strand, within GFF5242at 5237.463 kb on + strand, within GFF5242at 5237.471 kb on - strand, within GFF5242at 5237.471 kb on - strand, within GFF5242at 5237.471 kb on - strand, within GFF5242at 5237.476 kb on - strand, within GFF5242at 5237.476 kb on - strand, within GFF5242at 5237.502 kb on - strand, within GFF5242at 5237.514 kb on + strand, within GFF5242at 5237.598 kb on + strand, within GFF5242at 5237.640 kb on - strand, within GFF5242at 5237.640 kb on - strand, within GFF5242at 5237.642 kb on + strand, within GFF5242at 5237.642 kb on + strand, within GFF5242at 5237.650 kb on - strand, within GFF5242at 5237.685 kb on + strand, within GFF5242at 5237.685 kb on + strand, within GFF5242at 5237.685 kb on + strand, within GFF5242at 5237.685 kb on + strand, within GFF5242at 5237.692 kb on - strand, within GFF5242at 5237.693 kb on - strand, within GFF5242at 5237.693 kb on - strand, within GFF5242at 5237.693 kb on - strand, within GFF5242at 5237.693 kb on - strand, within GFF5242at 5237.693 kb on - strand, within GFF5242at 5237.693 kb on - strand, within GFF5242at 5237.751 kb on - strand, within GFF5242at 5237.836 kb on + strand, within GFF5242at 5237.846 kb on + strand, within GFF5242at 5237.877 kb on + strand, within GFF5242at 5237.885 kb on - strand, within GFF5242at 5237.912 kb on + strand, within GFF5242at 5237.923 kb on + strand, within GFF5242at 5237.940 kb on + strand, within GFF5242at 5237.948 kb on - strand, within GFF5242at 5237.948 kb on - strand, within GFF5242at 5237.948 kb on - strand, within GFF5242at 5237.954 kb on - strand, within GFF5242at 5237.954 kb on - strand, within GFF5242at 5237.956 kb on + strand, within GFF5242at 5237.959 kb on - strand, within GFF5242at 5237.961 kb on + strand, within GFF5242at 5237.969 kb on - strand, within GFF5242at 5237.969 kb on - strand, within GFF5242at 5238.039 kb on + strand, within GFF5242at 5238.039 kb on + strand, within GFF5242at 5238.039 kb on + strand, within GFF5242at 5238.127 kb on - strandat 5238.140 kb on + strandat 5238.145 kb on + strandat 5238.155 kb on + strandat 5238.155 kb on + strandat 5238.155 kb on + strandat 5238.155 kb on + strandat 5238.163 kb on - strandat 5238.174 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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5,235,684 + GFF5240 0.40 -1.0
5,235,684 + GFF5240 0.40 +1.0
5,235,684 + GFF5240 0.40 +0.0
5,235,684 + GFF5240 0.40 +0.3
5,235,692 - GFF5240 0.41 +0.7
5,235,692 - GFF5240 0.41 +0.5
5,235,692 - GFF5240 0.41 -0.1
5,235,692 - GFF5240 0.41 +0.1
5,235,697 - GFF5240 0.42 +0.4
5,235,697 - GFF5240 0.42 -1.0
5,235,730 + GFF5240 0.47 +0.1
5,235,857 - GFF5240 0.66 -0.1
5,235,857 - GFF5240 0.66 +1.0
5,235,877 - GFF5240 0.69 +0.1
5,235,907 + GFF5240 0.73 -1.7
5,235,946 + GFF5240 0.79 +0.6
5,235,946 + GFF5240 0.79 -0.5
5,236,022 + +1.5
5,236,130 + -0.2
5,236,179 - +0.1
5,236,179 - -0.1
5,236,250 + +0.7
5,236,254 - -0.0
5,236,263 + +0.9
5,236,263 + +0.1
5,236,271 - +0.9
5,236,310 - -1.3
5,236,331 - +0.8
5,236,331 - +0.7
5,236,338 - -2.2
5,236,366 + +0.5
5,236,366 + +0.2
5,236,366 - -0.1
5,236,374 - +0.5
5,236,432 - +0.2
5,236,444 - +1.9
5,236,450 + +0.4
5,236,456 + -0.9
5,236,456 + +0.4
5,236,492 - +0.7
5,236,607 + -0.0
5,236,651 + +0.6
5,236,651 + -0.2
5,236,651 + +0.6
5,236,651 + +0.1
5,236,651 + +0.5
5,236,651 + -0.9
5,236,651 + -0.7
5,236,651 + -0.6
5,236,651 + -2.0
5,236,651 + +1.3
5,236,651 + -0.9
5,236,651 + +0.0
5,236,651 + -0.2
5,236,651 + +1.0
5,236,659 - -0.7
5,236,659 - -0.3
5,236,659 - -0.9
5,236,659 - +0.4
5,236,659 - -0.4
5,236,659 - -2.3
5,236,703 - GFF5241 0.15 -0.7
5,236,787 - GFF5241 0.30 -2.4
5,236,839 + GFF5241 0.39 -0.9
5,236,856 + GFF5241 0.42 +0.7
5,236,890 + GFF5241 0.48 -2.1
5,236,913 + GFF5241 0.52 +0.0
5,236,913 + GFF5241 0.52 +0.2
5,236,924 + GFF5241 0.54 -1.8
5,236,938 - GFF5241 0.56 -2.7
5,236,971 - GFF5241 0.62 -2.1
5,236,978 + GFF5241 0.63 -0.7
5,236,978 + GFF5241 0.63 -1.3
5,236,978 + GFF5241 0.63 -0.4
5,236,983 + GFF5241 0.64 -1.9
5,236,983 + GFF5241 0.64 +0.3
5,236,983 + GFF5241 0.64 -2.5
5,236,986 - GFF5241 0.65 -0.9
5,236,986 - GFF5241 0.65 -0.1
5,236,986 - GFF5241 0.65 -2.5
5,236,986 - GFF5241 0.65 -2.8
5,236,990 + GFF5241 0.66 -2.6
5,236,991 - GFF5241 0.66 -0.7
5,236,991 - GFF5241 0.66 +0.9
5,236,991 - GFF5241 0.66 +1.3
5,236,991 - GFF5241 0.66 +0.1
5,236,991 - GFF5241 0.66 -0.2
5,236,991 - GFF5241 0.66 +1.6
5,236,991 - GFF5241 0.66 -0.7
5,236,991 - GFF5241 0.66 -3.3
5,236,991 - GFF5241 0.66 -0.8
5,236,991 - GFF5241 0.66 -0.2
5,236,991 - GFF5241 0.66 -1.3
5,236,991 - GFF5241 0.66 -1.6
5,236,991 - GFF5241 0.66 +0.9
5,236,991 - GFF5241 0.66 -1.8
5,237,017 - GFF5241 0.70 -1.7
5,237,031 + GFF5241 0.73 -0.7
5,237,039 - GFF5241 0.74 -0.4
5,237,039 - GFF5241 0.74 -1.5
5,237,039 - GFF5241 0.74 -0.7
5,237,039 - GFF5241 0.74 -0.1
5,237,039 - GFF5241 0.74 +0.2
5,237,044 + GFF5241 0.75 -0.1
5,237,143 - +1.0
5,237,148 - -1.6
5,237,165 - -0.1
5,237,169 - +1.7
5,237,241 + +0.1
5,237,243 + +0.6
5,237,243 + +0.2
5,237,245 + -1.4
5,237,281 - +0.6
5,237,301 - -1.1
5,237,326 + +2.5
5,237,326 + +0.3
5,237,334 - GFF5242 0.10 -0.3
5,237,347 + GFF5242 0.12 -0.1
5,237,360 - GFF5242 0.13 +1.5
5,237,410 + GFF5242 0.18 -0.2
5,237,433 + GFF5242 0.21 +1.0
5,237,450 + GFF5242 0.22 +0.5
5,237,458 + GFF5242 0.23 +0.5
5,237,463 + GFF5242 0.24 -0.9
5,237,471 - GFF5242 0.24 +1.9
5,237,471 - GFF5242 0.24 -1.1
5,237,471 - GFF5242 0.24 +0.3
5,237,476 - GFF5242 0.25 +0.3
5,237,476 - GFF5242 0.25 +0.9
5,237,502 - GFF5242 0.28 +0.4
5,237,514 + GFF5242 0.29 -0.5
5,237,598 + GFF5242 0.38 +0.2
5,237,640 - GFF5242 0.42 +0.6
5,237,640 - GFF5242 0.42 +1.0
5,237,642 + GFF5242 0.42 +1.7
5,237,642 + GFF5242 0.42 +0.9
5,237,650 - GFF5242 0.43 +0.9
5,237,685 + GFF5242 0.47 -0.1
5,237,685 + GFF5242 0.47 -0.3
5,237,685 + GFF5242 0.47 +0.9
5,237,685 + GFF5242 0.47 +1.2
5,237,692 - GFF5242 0.47 -0.0
5,237,693 - GFF5242 0.47 -0.1
5,237,693 - GFF5242 0.47 +0.9
5,237,693 - GFF5242 0.47 +0.9
5,237,693 - GFF5242 0.47 -0.1
5,237,693 - GFF5242 0.47 +1.5
5,237,693 - GFF5242 0.47 -0.3
5,237,751 - GFF5242 0.53 +0.4
5,237,836 + GFF5242 0.62 +0.8
5,237,846 + GFF5242 0.63 -0.8
5,237,877 + GFF5242 0.66 +0.6
5,237,885 - GFF5242 0.67 +1.5
5,237,912 + GFF5242 0.70 +0.3
5,237,923 + GFF5242 0.71 +0.8
5,237,940 + GFF5242 0.73 +0.9
5,237,948 - GFF5242 0.74 +0.1
5,237,948 - GFF5242 0.74 +0.4
5,237,948 - GFF5242 0.74 -0.1
5,237,954 - GFF5242 0.74 -0.1
5,237,954 - GFF5242 0.74 +0.9
5,237,956 + GFF5242 0.75 +0.1
5,237,959 - GFF5242 0.75 +1.1
5,237,961 + GFF5242 0.75 +0.6
5,237,969 - GFF5242 0.76 +1.4
5,237,969 - GFF5242 0.76 +2.4
5,238,039 + GFF5242 0.83 +1.9
5,238,039 + GFF5242 0.83 +0.9
5,238,039 + GFF5242 0.83 +0.4
5,238,127 - +1.3
5,238,140 + +0.3
5,238,145 + -1.4
5,238,155 + +1.1
5,238,155 + +0.6
5,238,155 + +1.1
5,238,155 + +0.4
5,238,163 - -0.3
5,238,174 - -0.2

Or see this region's nucleotide sequence