Strain Fitness in Sphingobium sp. HT1-2 around GFF5225

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,216,634	-				+0.1
5,216,634	-				+1.7
5,216,634	-				+0.7
5,216,634	-				+1.2
5,216,634	-				+0.1
5,216,644	-				-0.0
5,216,651	-				+0.2
5,216,659	-				-0.6
5,216,702	-				-1.2
5,216,736	+				+0.2
5,216,744	-				-0.2
5,216,757	-				-0.6
5,216,766	+				-1.2
5,216,766	+				-1.0
5,216,766	+				-3.0
5,216,766	+				-0.8
5,216,766	+				-1.9
5,216,766	+				-0.5
5,216,766	+				-0.9
5,216,766	+				-0.2
5,216,767	+				-0.7
5,216,767	-				-0.7
5,216,767	-				-0.3
5,216,767	-				+0.1
5,216,774	-				+0.3
5,216,774	-				+1.0
5,216,774	-				+0.5
5,216,774	-				-0.3
5,216,774	-				+1.0
5,216,774	-				+0.6
5,216,774	-				+0.8
5,216,774	-				-0.9
5,216,774	-				+1.8
5,216,774	-				+1.0
5,216,774	-				+0.4
5,216,784	-				+0.3
5,216,789	-		GFF5224	0.10	+1.4
5,216,789	-		GFF5224	0.10	+0.3
5,216,789	-		GFF5224	0.10	+0.1
5,216,794	-		GFF5224	0.11	-1.6
5,216,798	+		GFF5224	0.11	-0.3
5,216,803	+		GFF5224	0.12	+0.6
5,216,803	+		GFF5224	0.12	-0.5
5,216,811	-		GFF5224	0.13	+0.6
5,216,816	+		GFF5224	0.13	-0.8
5,216,828	-		GFF5224	0.15	-0.7
5,216,837	+		GFF5224	0.16	+0.9
5,216,838	-		GFF5224	0.16	+0.6
5,216,845	-		GFF5224	0.17	+1.0
5,216,866	+		GFF5224	0.19	+0.4
5,216,868	-		GFF5224	0.19	-1.7
5,216,881	-		GFF5224	0.21	-0.0
5,216,936	+		GFF5224	0.27	-0.6
5,216,936	+		GFF5224	0.27	-0.0
5,216,936	+		GFF5224	0.27	+0.5
5,216,936	+		GFF5224	0.27	-0.3
5,216,936	+		GFF5224	0.27	+0.1
5,216,936	+		GFF5224	0.27	+0.3
5,216,936	+		GFF5224	0.27	+0.8
5,216,936	+		GFF5224	0.27	-0.5
5,216,936	+		GFF5224	0.27	+0.6
5,216,936	+		GFF5224	0.27	-0.7
5,216,936	+		GFF5224	0.27	+0.5
5,216,936	+		GFF5224	0.27	-0.6
5,216,936	+		GFF5224	0.27	+1.2
5,216,936	+		GFF5224	0.27	+0.6
5,216,936	+		GFF5224	0.27	+1.0
5,216,936	+		GFF5224	0.27	+0.1
5,216,936	+		GFF5224	0.27	+0.5
5,216,941	+		GFF5224	0.28	+0.3
5,216,943	-		GFF5224	0.28	+0.8
5,216,944	-		GFF5224	0.28	+0.4
5,216,944	-		GFF5224	0.28	+0.5
5,216,944	-		GFF5224	0.28	+0.1
5,216,944	-		GFF5224	0.28	-1.1
5,216,944	-		GFF5224	0.28	-0.6
5,216,944	-		GFF5224	0.28	-0.2
5,216,944	-		GFF5224	0.28	+0.1
5,216,944	-		GFF5224	0.28	-0.2
5,216,944	-		GFF5224	0.28	-0.8
5,216,944	-		GFF5224	0.28	+0.8
5,216,944	-		GFF5224	0.28	+0.2
5,216,944	-		GFF5224	0.28	-0.9
5,216,944	-		GFF5224	0.28	-1.0
5,216,944	-		GFF5224	0.28	+0.1
5,216,944	-		GFF5224	0.28	+0.7
5,216,944	-		GFF5224	0.28	-0.4
5,216,944	-		GFF5224	0.28	+0.2
5,216,944	-		GFF5224	0.28	-0.5
5,216,944	-		GFF5224	0.28	+1.4
5,216,946	+		GFF5224	0.29	-0.3
5,216,949	-		GFF5224	0.29	+1.0
5,216,956	+		GFF5224	0.30	+1.3
5,216,956	+		GFF5224	0.30	-0.2
5,216,956	+		GFF5224	0.30	-0.8
5,216,956	+		GFF5224	0.30	-1.0
5,216,956	+		GFF5224	0.30	+0.3
5,216,956	+		GFF5224	0.30	-0.8
5,216,964	-		GFF5224	0.31	-0.7
5,216,964	-		GFF5224	0.31	+0.9
5,216,964	-		GFF5224	0.31	-2.2
5,216,964	-		GFF5224	0.31	+0.7
5,216,964	-		GFF5224	0.31	-1.1
5,216,964	-		GFF5224	0.31	+1.2
5,216,964	-		GFF5224	0.31	+0.3
5,216,978	+		GFF5224	0.32	-1.1
5,216,986	-		GFF5224	0.33	+0.3
5,216,994	-		GFF5224	0.34	+1.2
5,217,013	+		GFF5224	0.36	-0.1
5,217,015	-		GFF5224	0.37	-2.0
5,217,023	+		GFF5224	0.38	+0.9
5,217,023	+		GFF5224	0.38	+0.1
5,217,031	-		GFF5224	0.39	+0.7
5,217,031	-		GFF5224	0.39	-0.7
5,217,031	-		GFF5224	0.39	-1.7
5,217,031	-		GFF5224	0.39	-1.1
5,217,039	-		GFF5224	0.39	+0.1
5,217,058	-		GFF5224	0.42	+0.9
5,217,098	-		GFF5224	0.46	+0.6
5,217,105	+		GFF5224	0.47	-0.6
5,217,105	+		GFF5224	0.47	+0.1
5,217,149	-		GFF5224	0.52	-1.5
5,217,154	+		GFF5224	0.53	+0.1
5,217,154	+		GFF5224	0.53	+1.6
5,217,154	+		GFF5224	0.53	-2.0
5,217,154	+		GFF5224	0.53	-0.4
5,217,154	+		GFF5224	0.53	+0.0
5,217,154	+		GFF5224	0.53	+0.4
5,217,154	+		GFF5224	0.53	-0.2
5,217,158	+		GFF5224	0.53	+0.6
5,217,162	-		GFF5224	0.54	-1.2
5,217,162	-		GFF5224	0.54	-0.1
5,217,162	-		GFF5224	0.54	-0.5
5,217,162	-		GFF5224	0.54	+1.2
5,217,162	-		GFF5224	0.54	+0.0
5,217,164	+		GFF5224	0.54	+0.7
5,217,164	-		GFF5224	0.54	-2.1
5,217,172	-		GFF5224	0.55	-0.3
5,217,182	-		GFF5224	0.56	+0.6
5,217,184	+		GFF5224	0.57	+1.8
5,217,192	-		GFF5224	0.57	+0.5
5,217,194	-		GFF5224	0.58	-0.9
5,217,198	+		GFF5224	0.58	+0.6
5,217,198	+		GFF5224	0.58	+0.1
5,217,198	+		GFF5224	0.58	-0.6
5,217,198	+		GFF5224	0.58	-0.5
5,217,200	-		GFF5224	0.58	+0.1
5,217,206	-		GFF5224	0.59	-1.3
5,217,208	+		GFF5224	0.59	-0.1
5,217,208	+		GFF5224	0.59	+0.2
5,217,208	+		GFF5224	0.59	-0.2
5,217,216	-		GFF5224	0.60	-0.5
5,217,252	+		GFF5224	0.65	+0.7
5,217,319	-		GFF5224	0.72	-1.6
5,217,361	+		GFF5224	0.77	+1.1
5,217,361	+		GFF5224	0.77	+0.8
5,217,361	+		GFF5224	0.77	-1.0
5,217,361	+		GFF5224	0.77	+0.4
5,217,361	+		GFF5224	0.77	-3.7
5,217,361	+		GFF5224	0.77	+0.3
5,217,361	+		GFF5224	0.77	+1.0
5,217,361	+		GFF5224	0.77	+0.6
5,217,361	+		GFF5224	0.77	+0.4
5,217,366	+		GFF5224	0.78	+0.6
5,217,366	+		GFF5224	0.78	-2.3
5,217,366	+		GFF5224	0.78	+0.4
5,217,366	+		GFF5224	0.78	+1.0
5,217,369	-		GFF5224	0.78	-0.7
5,217,369	-		GFF5224	0.78	+0.8
5,217,369	-		GFF5224	0.78	+0.3
5,217,369	-		GFF5224	0.78	+0.4
5,217,369	-		GFF5224	0.78	-1.7
5,217,369	-		GFF5224	0.78	+1.1
5,217,390	-		GFF5224	0.81	+0.3
5,217,398	-		GFF5224	0.82	+0.3
5,217,405	-		GFF5224	0.83	-1.4
5,217,405	-		GFF5224	0.83	-1.1
5,217,407	+		GFF5224	0.83	+0.9
5,217,407	+		GFF5224	0.83	+0.2
5,217,410	-		GFF5224	0.83	-0.3
5,217,410	-		GFF5224	0.83	+0.2
5,217,414	+		GFF5224	0.84	-1.2
5,217,415	+		GFF5224	0.84	+1.1
5,217,415	-		GFF5224	0.84	+0.5
5,217,427	-		GFF5224	0.85	-1.1
5,217,433	+		GFF5224	0.86	+0.8
5,217,433	+		GFF5224	0.86	-1.9
5,217,442	-		GFF5224	0.87	-0.0
5,217,448	-		GFF5224	0.88	+0.4
5,217,457	+		GFF5224	0.89	+0.1
5,217,465	-		GFF5224	0.90	-1.1
5,217,471	-				-0.7
5,217,488	+				+0.6
5,217,490	-				+0.1
5,217,506	+				+0.5
5,217,509	-				-1.1
5,217,543	+				+0.0
5,217,553	+				+0.1
5,217,558	+				-2.1
5,217,558	+				-0.8
5,217,606	+				+1.5
5,217,617	+				+0.8
5,217,635	+				-0.4
5,217,643	-				-0.9
5,217,643	-				-2.9
5,217,643	-				-0.0
5,217,667	-				-0.2
5,217,680	+				+0.1
5,217,688	-				+1.4
5,217,694	-				+0.8
5,217,702	-				+1.1
5,217,730	-				-0.9
5,217,744	-				-1.1
5,217,749	+				-0.0
5,217,757	-				+0.2
5,217,789	-				+0.5
5,217,800	+				+1.4
5,217,800	-				+0.2
5,217,800	-				+0.7
5,217,800	-				+0.9
5,217,800	-				+0.1
5,217,824	+		GFF5225	0.11	-0.4
5,217,831	+		GFF5225	0.11	+1.4
5,217,859	-		GFF5225	0.13	+0.2
5,217,861	+		GFF5225	0.13	+0.9
5,217,884	-		GFF5225	0.14	-0.7
5,217,913	-		GFF5225	0.16	-2.9
5,217,924	+		GFF5225	0.17	+0.7
5,217,942	-		GFF5225	0.18	+0.9
5,217,942	-		GFF5225	0.18	-0.0
5,218,011	+		GFF5225	0.21	+0.8
5,218,011	+		GFF5225	0.21	-0.2
5,218,021	+		GFF5225	0.22	+1.0
5,218,021	+		GFF5225	0.22	+0.8
5,218,023	+		GFF5225	0.22	+1.8
5,218,029	-		GFF5225	0.22	-0.0
5,218,036	+		GFF5225	0.23	-1.0
5,218,043	+		GFF5225	0.23	-1.6
5,218,061	-		GFF5225	0.24	+0.8
5,218,063	-		GFF5225	0.24	+0.3
5,218,076	+		GFF5225	0.25	-0.5
5,218,081	+		GFF5225	0.25	+0.0
5,218,084	-		GFF5225	0.26	+0.4
5,218,084	-		GFF5225	0.26	+0.5
5,218,105	+		GFF5225	0.27	+0.7
5,218,113	-		GFF5225	0.27	-2.1
5,218,117	+		GFF5225	0.27	+0.5
5,218,120	-		GFF5225	0.28	-0.2
5,218,126	+		GFF5225	0.28	+1.0
5,218,144	-		GFF5225	0.29	+0.3
5,218,144	-		GFF5225	0.29	-1.7
5,218,144	-		GFF5225	0.29	-1.6
5,218,178	-		GFF5225	0.31	+0.1
5,218,182	-		GFF5225	0.31	-2.1
5,218,193	-		GFF5225	0.32	-0.9
5,218,195	-		GFF5225	0.32	-0.9
5,218,195	-		GFF5225	0.32	+1.2
5,218,228	+		GFF5225	0.34	-0.9
5,218,228	+		GFF5225	0.34	-0.4
5,218,236	-		GFF5225	0.34	+0.3
5,218,255	+		GFF5225	0.35	+0.4
5,218,319	+		GFF5225	0.39	+0.0
5,218,319	+		GFF5225	0.39	-0.7
5,218,338	-		GFF5225	0.40	-0.4
5,218,338	-		GFF5225	0.40	+1.0
5,218,436	-		GFF5225	0.46	-0.0
5,218,451	+		GFF5225	0.46	-0.7
5,218,451	+		GFF5225	0.46	-1.7
5,218,461	+		GFF5225	0.47	+1.1
5,218,464	-		GFF5225	0.47	-1.2
5,218,481	+		GFF5225	0.48	+1.1
5,218,505	-		GFF5225	0.49	+1.0
5,218,541	+		GFF5225	0.51	+0.5
5,218,544	-		GFF5225	0.52	-0.7
5,218,544	-		GFF5225	0.52	+0.2
5,218,551	+		GFF5225	0.52	+0.3
5,218,551	+		GFF5225	0.52	-0.2
5,218,551	+		GFF5225	0.52	-1.4
5,218,551	+		GFF5225	0.52	+0.4
5,218,555	+		GFF5225	0.52	-1.0
5,218,555	+		GFF5225	0.52	-0.5
5,218,568	+		GFF5225	0.53	-0.8
5,218,573	+		GFF5225	0.53	+0.0
5,218,576	-		GFF5225	0.53	-0.6
5,218,615	-		GFF5225	0.56	+0.3
5,218,686	-		GFF5225	0.60	+0.5
5,218,729	-		GFF5225	0.62	+1.3
5,218,748	+		GFF5225	0.63	+0.8
5,218,756	-		GFF5225	0.64	-1.2
5,218,772	+		GFF5225	0.65	+1.1
5,218,772	+		GFF5225	0.65	-2.2
5,218,797	+		GFF5225	0.66	+0.8
5,218,805	-		GFF5225	0.66	-0.2
5,218,805	-		GFF5225	0.66	+1.2
5,218,858	+		GFF5225	0.69	-1.0
5,218,858	+		GFF5225	0.69	+0.6
5,218,866	-		GFF5225	0.70	+0.3
5,218,866	-		GFF5225	0.70	-3.0
5,218,883	+		GFF5225	0.71	-0.4
5,218,893	+		GFF5225	0.71	+1.3
5,218,895	-		GFF5225	0.71	+0.5
5,218,907	+		GFF5225	0.72	+0.3
5,218,907	+		GFF5225	0.72	-1.0
5,218,912	+		GFF5225	0.72	-0.7
5,218,912	+		GFF5225	0.72	+0.0
5,218,912	+		GFF5225	0.72	+0.4
5,218,915	-		GFF5225	0.73	+0.6
5,218,915	-		GFF5225	0.73	-0.9
5,218,915	-		GFF5225	0.73	-0.6
5,218,915	-		GFF5225	0.73	+0.0
5,218,915	-		GFF5225	0.73	+1.0
5,218,917	+		GFF5225	0.73	-0.2
5,218,920	-		GFF5225	0.73	-0.9
5,218,920	-		GFF5225	0.73	-0.2
5,218,923	-		GFF5225	0.73	+1.0
5,218,939	+		GFF5225	0.74	+0.4
5,218,939	+		GFF5225	0.74	+1.6
5,218,947	-		GFF5225	0.74	-2.0
5,218,977	+		GFF5225	0.76	-1.2
5,218,985	-		GFF5225	0.77	+0.6
5,218,999	+		GFF5225	0.77	-1.3
5,218,999	+		GFF5225	0.77	-0.2
5,218,999	+		GFF5225	0.77	+0.4
5,218,999	+		GFF5225	0.77	-0.0
5,219,007	-		GFF5225	0.78	-0.6
5,219,007	-		GFF5225	0.78	+1.5
5,219,007	-		GFF5225	0.78	-1.0
5,219,023	+		GFF5225	0.79	-0.5
5,219,086	-		GFF5225	0.82	-0.2
5,219,086	-		GFF5225	0.82	+0.6
5,219,088	-		GFF5225	0.82	-2.1
5,219,088	-		GFF5225	0.82	+0.5
5,219,124	+		GFF5225	0.84	-0.2
5,219,124	+		GFF5225	0.84	-1.4
5,219,172	+		GFF5225	0.87	+1.3
5,219,176	+		GFF5225	0.87	+0.7
5,219,180	-		GFF5225	0.88	+0.6
5,219,184	-		GFF5225	0.88	+0.3
5,219,184	-		GFF5225	0.88	+0.7
5,219,197	+		GFF5225	0.89	+0.2
5,219,205	-		GFF5225	0.89	+0.7
5,219,225	-				+0.2
5,219,227	+				-0.7
5,219,237	+				+0.2
5,219,249	-				-2.1
5,219,255	+				-2.2
5,219,273	-				+1.2
5,219,275	+				+0.0
5,219,275	+				-0.2
5,219,283	-				-0.5
5,219,283	-				+1.0
5,219,283	-				-0.9
5,219,285	+				-0.2
5,219,292	-				+0.8
5,219,301	+				+1.5
5,219,305	-				-0.4
5,219,310	+				+0.1
5,219,329	+				-0.1
5,219,337	-				+1.3
5,219,349	-				-2.8
5,219,414	-				+0.5
5,219,484	-				-0.3
5,219,520	+				-0.7
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