Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF5216 and GFF5217 overlap by 4 nucleotides GFF5217 and GFF5218 overlap by 4 nucleotides GFF5218 and GFF5219 overlap by 4 nucleotides GFF5219 and GFF5220 overlap by 4 nucleotides GFF5220 and GFF5221 overlap by 4 nucleotides
GFF5216 - Sodium-transporting ATPase subunit D, at 5,211,161 to 5,212,573
GFF5216
GFF5217 - Sodium-transporting ATPase subunit C, at 5,212,570 to 5,212,980
GFF5217
GFF5218 - ATP synthase protein I, at 5,212,977 to 5,213,252
GFF5218
GFF5219 - hypothetical protein, at 5,213,249 to 5,213,515
GFF5219
GFF5220 - Sodium-transporting ATPase subunit B, at 5,213,512 to 5,214,213
GFF5220
GFF5221 - Sodium-transporting ATPase subunit E, at 5,214,210 to 5,214,452
GFF5221
Position (kb) 5212
5213
5214 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 5211.995 kb on - strand, within GFF5216 at 5211.998 kb on + strand, within GFF5216 at 5212.003 kb on + strand, within GFF5216 at 5212.011 kb on - strand, within GFF5216 at 5212.022 kb on + strand, within GFF5216 at 5212.030 kb on - strand, within GFF5216 at 5212.038 kb on - strand, within GFF5216 at 5212.043 kb on + strand, within GFF5216 at 5212.076 kb on + strand, within GFF5216 at 5212.104 kb on + strand, within GFF5216 at 5212.112 kb on - strand, within GFF5216 at 5212.116 kb on + strand, within GFF5216 at 5212.125 kb on + strand, within GFF5216 at 5212.140 kb on + strand, within GFF5216 at 5212.140 kb on + strand, within GFF5216 at 5212.140 kb on - strand, within GFF5216 at 5212.148 kb on - strand, within GFF5216 at 5212.168 kb on + strand, within GFF5216 at 5212.221 kb on - strand, within GFF5216 at 5212.224 kb on + strand, within GFF5216 at 5212.231 kb on + strand, within GFF5216 at 5212.231 kb on + strand, within GFF5216 at 5212.231 kb on + strand, within GFF5216 at 5212.239 kb on - strand, within GFF5216 at 5212.270 kb on + strand, within GFF5216 at 5212.298 kb on + strand, within GFF5216 at 5212.298 kb on + strand, within GFF5216 at 5212.311 kb on - strand, within GFF5216 at 5212.339 kb on - strand, within GFF5216 at 5212.339 kb on - strand, within GFF5216 at 5212.398 kb on + strand, within GFF5216 at 5212.409 kb on + strand, within GFF5216 at 5212.414 kb on + strand, within GFF5216 at 5212.414 kb on + strand, within GFF5216 at 5212.416 kb on - strand, within GFF5216 at 5212.422 kb on - strand, within GFF5216 at 5212.422 kb on - strand, within GFF5216 at 5212.432 kb on + strand at 5212.458 kb on - strand at 5212.459 kb on + strand at 5212.460 kb on + strand at 5212.498 kb on + strand at 5212.505 kb on + strand at 5212.518 kb on + strand at 5212.551 kb on - strand at 5212.559 kb on + strand at 5212.617 kb on + strand, within GFF5217 at 5212.617 kb on + strand, within GFF5217 at 5212.625 kb on - strand, within GFF5217 at 5212.630 kb on - strand, within GFF5217 at 5212.636 kb on + strand, within GFF5217 at 5212.644 kb on - strand, within GFF5217 at 5212.671 kb on - strand, within GFF5217 at 5212.728 kb on - strand, within GFF5217 at 5212.750 kb on - strand, within GFF5217 at 5212.789 kb on - strand, within GFF5217 at 5212.789 kb on - strand, within GFF5217 at 5212.795 kb on + strand, within GFF5217 at 5212.796 kb on - strand, within GFF5217 at 5212.827 kb on + strand, within GFF5217 at 5212.849 kb on - strand, within GFF5217 at 5212.849 kb on - strand, within GFF5217 at 5212.899 kb on - strand, within GFF5217 at 5212.911 kb on + strand, within GFF5217 at 5212.911 kb on + strand, within GFF5217 at 5212.919 kb on - strand, within GFF5217 at 5212.919 kb on - strand, within GFF5217 at 5212.919 kb on - strand, within GFF5217 at 5212.945 kb on + strand at 5212.946 kb on - strand at 5212.948 kb on + strand at 5212.953 kb on + strand at 5212.955 kb on - strand at 5212.956 kb on - strand at 5212.958 kb on + strand at 5212.958 kb on - strand at 5212.958 kb on - strand at 5212.961 kb on + strand at 5212.967 kb on + strand at 5212.990 kb on + strand at 5212.990 kb on + strand at 5212.990 kb on + strand at 5212.993 kb on - strand at 5212.998 kb on - strand at 5213.016 kb on + strand, within GFF5218 at 5213.016 kb on + strand, within GFF5218 at 5213.016 kb on + strand, within GFF5218 at 5213.024 kb on - strand, within GFF5218 at 5213.024 kb on - strand, within GFF5218 at 5213.024 kb on - strand, within GFF5218 at 5213.024 kb on - strand, within GFF5218 at 5213.024 kb on - strand, within GFF5218 at 5213.024 kb on - strand, within GFF5218 at 5213.024 kb on - strand, within GFF5218 at 5213.034 kb on - strand, within GFF5218 at 5213.041 kb on + strand, within GFF5218 at 5213.041 kb on + strand, within GFF5218 at 5213.084 kb on + strand, within GFF5218 at 5213.131 kb on - strand, within GFF5218 at 5213.146 kb on + strand, within GFF5218 at 5213.170 kb on - strand, within GFF5218 at 5213.174 kb on + strand, within GFF5218 at 5213.174 kb on + strand, within GFF5218 at 5213.174 kb on + strand, within GFF5218 at 5213.174 kb on + strand, within GFF5218 at 5213.174 kb on + strand, within GFF5218 at 5213.174 kb on + strand, within GFF5218 at 5213.182 kb on - strand, within GFF5218 at 5213.182 kb on - strand, within GFF5218 at 5213.182 kb on - strand, within GFF5218 at 5213.182 kb on - strand, within GFF5218 at 5213.193 kb on - strand, within GFF5218 at 5213.202 kb on + strand, within GFF5218 at 5213.216 kb on - strand, within GFF5218 at 5213.252 kb on + strand at 5213.262 kb on + strand at 5213.262 kb on + strand at 5213.265 kb on - strand at 5213.270 kb on - strand at 5213.270 kb on - strand at 5213.270 kb on - strand at 5213.280 kb on - strand, within GFF5219 at 5213.281 kb on + strand, within GFF5219 at 5213.294 kb on - strand, within GFF5219 at 5213.336 kb on - strand, within GFF5219 at 5213.343 kb on + strand, within GFF5219 at 5213.369 kb on + strand, within GFF5219 at 5213.374 kb on + strand, within GFF5219 at 5213.374 kb on + strand, within GFF5219 at 5213.374 kb on + strand, within GFF5219 at 5213.379 kb on + strand, within GFF5219 at 5213.382 kb on - strand, within GFF5219 at 5213.432 kb on - strand, within GFF5219 at 5213.485 kb on - strand, within GFF5219 at 5213.487 kb on + strand, within GFF5219 at 5213.497 kb on + strand at 5213.497 kb on + strand at 5213.537 kb on + strand at 5213.547 kb on + strand at 5213.547 kb on + strand at 5213.558 kb on + strand at 5213.558 kb on + strand at 5213.566 kb on - strand at 5213.566 kb on - strand at 5213.590 kb on + strand, within GFF5220 at 5213.617 kb on - strand, within GFF5220 at 5213.625 kb on - strand, within GFF5220 at 5213.659 kb on + strand, within GFF5220 at 5213.659 kb on + strand, within GFF5220 at 5213.659 kb on + strand, within GFF5220 at 5213.659 kb on + strand, within GFF5220 at 5213.659 kb on + strand, within GFF5220 at 5213.659 kb on + strand, within GFF5220 at 5213.662 kb on - strand, within GFF5220 at 5213.667 kb on - strand, within GFF5220 at 5213.667 kb on - strand, within GFF5220 at 5213.667 kb on - strand, within GFF5220 at 5213.682 kb on - strand, within GFF5220 at 5213.704 kb on + strand, within GFF5220 at 5213.726 kb on + strand, within GFF5220 at 5213.727 kb on - strand, within GFF5220 at 5213.752 kb on - strand, within GFF5220 at 5213.754 kb on + strand, within GFF5220 at 5213.762 kb on - strand, within GFF5220 at 5213.764 kb on + strand, within GFF5220 at 5213.766 kb on + strand, within GFF5220 at 5213.766 kb on + strand, within GFF5220 at 5213.774 kb on - strand, within GFF5220 at 5213.797 kb on + strand, within GFF5220 at 5213.805 kb on - strand, within GFF5220 at 5213.810 kb on - strand, within GFF5220 at 5213.840 kb on - strand, within GFF5220 at 5213.878 kb on - strand, within GFF5220 at 5213.882 kb on + strand, within GFF5220 at 5213.890 kb on - strand, within GFF5220 at 5213.910 kb on + strand, within GFF5220 at 5213.925 kb on - strand, within GFF5220 at 5213.925 kb on - strand, within GFF5220 at 5213.934 kb on + strand, within GFF5220 at 5213.934 kb on + strand, within GFF5220 at 5213.934 kb on + strand, within GFF5220 at 5213.935 kb on + strand, within GFF5220 at 5213.936 kb on + strand, within GFF5220 at 5213.936 kb on + strand, within GFF5220 at 5213.936 kb on + strand, within GFF5220 at 5213.936 kb on + strand, within GFF5220 at 5213.936 kb on + strand, within GFF5220 at 5213.944 kb on - strand, within GFF5220 at 5213.963 kb on - strand, within GFF5220 at 5213.965 kb on + strand, within GFF5220 at 5213.971 kb on + strand, within GFF5220 at 5213.979 kb on - strand, within GFF5220 at 5213.979 kb on - strand, within GFF5220 at 5213.984 kb on + strand, within GFF5220 at 5214.006 kb on + strand, within GFF5220 at 5214.016 kb on + strand, within GFF5220 at 5214.018 kb on + strand, within GFF5220 at 5214.044 kb on - strand, within GFF5220 at 5214.046 kb on + strand, within GFF5220 at 5214.046 kb on + strand, within GFF5220 at 5214.046 kb on + strand, within GFF5220 at 5214.046 kb on + strand, within GFF5220 at 5214.049 kb on - strand, within GFF5220 at 5214.054 kb on - strand, within GFF5220 at 5214.054 kb on - strand, within GFF5220 at 5214.055 kb on - strand, within GFF5220 at 5214.074 kb on - strand, within GFF5220 at 5214.079 kb on - strand, within GFF5220 at 5214.097 kb on + strand, within GFF5220 at 5214.107 kb on + strand, within GFF5220 at 5214.112 kb on + strand, within GFF5220 at 5214.112 kb on + strand, within GFF5220 at 5214.112 kb on + strand, within GFF5220 at 5214.112 kb on + strand, within GFF5220 at 5214.112 kb on + strand, within GFF5220 at 5214.120 kb on - strand, within GFF5220 at 5214.120 kb on - strand, within GFF5220 at 5214.120 kb on - strand, within GFF5220 at 5214.148 kb on - strand at 5214.225 kb on - strand at 5214.236 kb on + strand, within GFF5221
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 5,211,995 - GFF5216 0.59 -2.0 5,211,998 + GFF5216 0.59 +0.5 5,212,003 + GFF5216 0.60 +0.1 5,212,011 - GFF5216 0.60 -0.2 5,212,022 + GFF5216 0.61 -0.9 5,212,030 - GFF5216 0.62 +0.9 5,212,038 - GFF5216 0.62 -0.5 5,212,043 + GFF5216 0.62 +0.6 5,212,076 + GFF5216 0.65 -0.6 5,212,104 + GFF5216 0.67 -0.6 5,212,112 - GFF5216 0.67 -1.6 5,212,116 + GFF5216 0.68 +1.1 5,212,125 + GFF5216 0.68 -0.1 5,212,140 + GFF5216 0.69 +1.5 5,212,140 + GFF5216 0.69 +1.3 5,212,140 - GFF5216 0.69 -2.2 5,212,148 - GFF5216 0.70 +0.3 5,212,168 + GFF5216 0.71 +0.8 5,212,221 - GFF5216 0.75 +0.6 5,212,224 + GFF5216 0.75 +0.4 5,212,231 + GFF5216 0.76 +0.5 5,212,231 + GFF5216 0.76 +0.2 5,212,231 + GFF5216 0.76 +0.8 5,212,239 - GFF5216 0.76 -0.6 5,212,270 + GFF5216 0.78 +0.9 5,212,298 + GFF5216 0.80 +0.7 5,212,298 + GFF5216 0.80 +0.7 5,212,311 - GFF5216 0.81 +0.5 5,212,339 - GFF5216 0.83 -0.2 5,212,339 - GFF5216 0.83 +1.5 5,212,398 + GFF5216 0.88 -0.0 5,212,409 + GFF5216 0.88 -1.7 5,212,414 + GFF5216 0.89 +0.4 5,212,414 + GFF5216 0.89 -0.0 5,212,416 - GFF5216 0.89 -1.1 5,212,422 - GFF5216 0.89 +0.8 5,212,422 - GFF5216 0.89 -0.2 5,212,432 + +1.1 5,212,458 - -1.5 5,212,459 + +0.1 5,212,460 + -0.3 5,212,498 + +0.3 5,212,505 + -0.9 5,212,518 + -0.2 5,212,551 - -1.5 5,212,559 + -1.0 5,212,617 + GFF5217 0.11 +0.8 5,212,617 + GFF5217 0.11 +0.6 5,212,625 - GFF5217 0.13 +0.7 5,212,630 - GFF5217 0.15 -1.6 5,212,636 + GFF5217 0.16 -1.2 5,212,644 - GFF5217 0.18 -2.2 5,212,671 - GFF5217 0.25 +0.3 5,212,728 - GFF5217 0.38 +0.2 5,212,750 - GFF5217 0.44 -1.0 5,212,789 - GFF5217 0.53 +0.1 5,212,789 - GFF5217 0.53 +1.0 5,212,795 + GFF5217 0.55 +0.4 5,212,796 - GFF5217 0.55 -1.6 5,212,827 + GFF5217 0.63 +0.5 5,212,849 - GFF5217 0.68 +1.2 5,212,849 - GFF5217 0.68 +0.4 5,212,899 - GFF5217 0.80 +1.2 5,212,911 + GFF5217 0.83 +0.0 5,212,911 + GFF5217 0.83 +0.7 5,212,919 - GFF5217 0.85 +0.3 5,212,919 - GFF5217 0.85 +0.0 5,212,919 - GFF5217 0.85 +0.1 5,212,945 + -2.0 5,212,946 - +1.0 5,212,948 + +0.9 5,212,953 + -1.0 5,212,955 - -0.1 5,212,956 - -0.6 5,212,958 + -0.6 5,212,958 - -1.6 5,212,958 - +0.5 5,212,961 + -2.1 5,212,967 + -1.5 5,212,990 + -0.2 5,212,990 + +0.2 5,212,990 + +0.9 5,212,993 - +0.6 5,212,998 - -0.8 5,213,016 + GFF5218 0.14 +1.2 5,213,016 + GFF5218 0.14 +0.9 5,213,016 + GFF5218 0.14 -0.3 5,213,024 - GFF5218 0.17 -1.1 5,213,024 - GFF5218 0.17 +0.7 5,213,024 - GFF5218 0.17 +0.3 5,213,024 - GFF5218 0.17 +0.7 5,213,024 - GFF5218 0.17 -0.2 5,213,024 - GFF5218 0.17 -1.0 5,213,024 - GFF5218 0.17 -0.5 5,213,034 - GFF5218 0.21 -0.4 5,213,041 + GFF5218 0.23 -0.9 5,213,041 + GFF5218 0.23 -0.6 5,213,084 + GFF5218 0.39 -1.2 5,213,131 - GFF5218 0.56 -1.9 5,213,146 + GFF5218 0.61 +0.4 5,213,170 - GFF5218 0.70 +0.4 5,213,174 + GFF5218 0.71 +0.8 5,213,174 + GFF5218 0.71 +0.3 5,213,174 + GFF5218 0.71 +0.6 5,213,174 + GFF5218 0.71 -0.3 5,213,174 + GFF5218 0.71 +0.3 5,213,174 + GFF5218 0.71 +0.1 5,213,182 - GFF5218 0.74 +0.4 5,213,182 - GFF5218 0.74 -1.1 5,213,182 - GFF5218 0.74 -0.3 5,213,182 - GFF5218 0.74 +0.2 5,213,193 - GFF5218 0.78 -0.7 5,213,202 + GFF5218 0.82 +0.3 5,213,216 - GFF5218 0.87 +1.1 5,213,252 + +0.5 5,213,262 + -0.2 5,213,262 + -2.0 5,213,265 - -0.3 5,213,270 - -0.7 5,213,270 - +0.4 5,213,270 - -0.2 5,213,280 - GFF5219 0.12 -0.2 5,213,281 + GFF5219 0.12 -0.6 5,213,294 - GFF5219 0.17 -2.5 5,213,336 - GFF5219 0.33 +1.0 5,213,343 + GFF5219 0.35 -0.5 5,213,369 + GFF5219 0.45 -0.5 5,213,374 + GFF5219 0.47 -0.2 5,213,374 + GFF5219 0.47 -0.2 5,213,374 + GFF5219 0.47 -0.4 5,213,379 + GFF5219 0.49 +0.3 5,213,382 - GFF5219 0.50 -1.1 5,213,432 - GFF5219 0.69 -2.1 5,213,485 - GFF5219 0.88 +0.0 5,213,487 + GFF5219 0.89 -0.5 5,213,497 + -0.3 5,213,497 + -0.3 5,213,537 + +1.3 5,213,547 + +0.1 5,213,547 + +0.7 5,213,558 + -1.7 5,213,558 + -0.3 5,213,566 - -0.2 5,213,566 - +1.6 5,213,590 + GFF5220 0.11 -1.5 5,213,617 - GFF5220 0.15 -0.3 5,213,625 - GFF5220 0.16 +1.1 5,213,659 + GFF5220 0.21 -0.6 5,213,659 + GFF5220 0.21 +0.4 5,213,659 + GFF5220 0.21 +0.6 5,213,659 + GFF5220 0.21 -0.7 5,213,659 + GFF5220 0.21 +0.0 5,213,659 + GFF5220 0.21 +1.2 5,213,662 - GFF5220 0.21 +0.4 5,213,667 - GFF5220 0.22 +0.4 5,213,667 - GFF5220 0.22 -1.6 5,213,667 - GFF5220 0.22 +0.4 5,213,682 - GFF5220 0.24 -2.2 5,213,704 + GFF5220 0.27 -0.7 5,213,726 + GFF5220 0.30 +0.4 5,213,727 - GFF5220 0.31 +0.0 5,213,752 - GFF5220 0.34 +0.7 5,213,754 + GFF5220 0.34 +0.6 5,213,762 - GFF5220 0.36 +1.4 5,213,764 + GFF5220 0.36 -2.1 5,213,766 + GFF5220 0.36 -0.5 5,213,766 + GFF5220 0.36 +0.4 5,213,774 - GFF5220 0.37 +0.4 5,213,797 + GFF5220 0.41 -0.2 5,213,805 - GFF5220 0.42 +1.8 5,213,810 - GFF5220 0.42 -1.1 5,213,840 - GFF5220 0.47 -0.8 5,213,878 - GFF5220 0.52 +0.6 5,213,882 + GFF5220 0.53 +0.7 5,213,890 - GFF5220 0.54 -1.2 5,213,910 + GFF5220 0.57 -0.6 5,213,925 - GFF5220 0.59 +0.1 5,213,925 - GFF5220 0.59 -0.6 5,213,934 + GFF5220 0.60 -0.2 5,213,934 + GFF5220 0.60 +0.4 5,213,934 + GFF5220 0.60 +0.4 5,213,935 + GFF5220 0.60 -0.2 5,213,936 + GFF5220 0.60 -0.3 5,213,936 + GFF5220 0.60 +1.1 5,213,936 + GFF5220 0.60 +0.2 5,213,936 + GFF5220 0.60 -0.7 5,213,936 + GFF5220 0.60 -0.6 5,213,944 - GFF5220 0.62 -0.2 5,213,963 - GFF5220 0.64 -0.7 5,213,965 + GFF5220 0.65 +0.8 5,213,971 + GFF5220 0.65 -0.7 5,213,979 - GFF5220 0.67 -0.2 5,213,979 - GFF5220 0.67 -0.2 5,213,984 + GFF5220 0.67 +1.1 5,214,006 + GFF5220 0.70 +0.7 5,214,016 + GFF5220 0.72 -0.2 5,214,018 + GFF5220 0.72 -0.7 5,214,044 - GFF5220 0.76 -0.6 5,214,046 + GFF5220 0.76 +0.3 5,214,046 + GFF5220 0.76 -0.5 5,214,046 + GFF5220 0.76 -1.3 5,214,046 + GFF5220 0.76 -0.2 5,214,049 - GFF5220 0.76 -0.1 5,214,054 - GFF5220 0.77 -0.2 5,214,054 - GFF5220 0.77 +0.0 5,214,055 - GFF5220 0.77 -3.1 5,214,074 - GFF5220 0.80 -0.7 5,214,079 - GFF5220 0.81 -2.3 5,214,097 + GFF5220 0.83 -1.3 5,214,107 + GFF5220 0.85 -1.0 5,214,112 + GFF5220 0.85 +0.6 5,214,112 + GFF5220 0.85 +1.4 5,214,112 + GFF5220 0.85 -0.9 5,214,112 + GFF5220 0.85 +0.0 5,214,112 + GFF5220 0.85 -0.7 5,214,120 - GFF5220 0.87 +0.1 5,214,120 - GFF5220 0.87 +0.9 5,214,120 - GFF5220 0.87 +0.3 5,214,148 - -0.3 5,214,225 - +1.1 5,214,236 + GFF5221 0.11 +0.4
Or see this region's nucleotide sequence