Strain Fitness in Sphingobium sp. HT1-2 around GFF5166

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,156,568	+		GFF5165	0.56	-0.9
5,156,571	-		GFF5165	0.56	+1.3
5,156,582	+		GFF5165	0.56	-0.5
5,156,582	+		GFF5165	0.56	-0.4
5,156,582	+		GFF5165	0.56	-2.2
5,156,590	-		GFF5165	0.57	-3.0
5,156,590	-		GFF5165	0.57	-1.1
5,156,595	-		GFF5165	0.57	-0.8
5,156,613	-		GFF5165	0.58	-1.7
5,156,620	+		GFF5165	0.58	+0.8
5,156,620	+		GFF5165	0.58	-0.6
5,156,620	+		GFF5165	0.58	-2.5
5,156,620	+		GFF5165	0.58	-0.2
5,156,620	-		GFF5165	0.58	-0.4
5,156,628	-		GFF5165	0.58	+0.1
5,156,628	-		GFF5165	0.58	-0.6
5,156,628	-		GFF5165	0.58	-0.6
5,156,628	-		GFF5165	0.58	+0.5
5,156,628	-		GFF5165	0.58	-0.6
5,156,628	-		GFF5165	0.58	-0.8
5,156,628	-		GFF5165	0.58	-0.6
5,156,628	-		GFF5165	0.58	-0.9
5,156,641	+		GFF5165	0.59	-1.3
5,156,641	+		GFF5165	0.59	-1.8
5,156,641	+		GFF5165	0.59	-1.9
5,156,641	+		GFF5165	0.59	-0.8
5,156,646	+		GFF5165	0.59	-1.9
5,156,649	-		GFF5165	0.59	-0.1
5,156,649	-		GFF5165	0.59	-0.8
5,156,649	-		GFF5165	0.59	-0.7
5,156,649	-		GFF5165	0.59	+0.1
5,156,649	-		GFF5165	0.59	-0.6
5,156,649	-		GFF5165	0.59	+0.3
5,156,649	-		GFF5165	0.59	-2.9
5,156,675	-		GFF5165	0.60	+0.0
5,156,688	+		GFF5165	0.61	-0.0
5,156,726	-		GFF5165	0.63	+1.2
5,156,727	+		GFF5165	0.63	-0.0
5,156,765	+		GFF5165	0.64	-2.1
5,156,801	+		GFF5165	0.66	+0.1
5,156,830	+		GFF5165	0.67	+0.0
5,156,830	+		GFF5165	0.67	+0.3
5,156,830	+		GFF5165	0.67	+0.4
5,156,835	+		GFF5165	0.67	-0.1
5,156,838	-		GFF5165	0.67	+0.1
5,156,838	-		GFF5165	0.67	-1.7
5,156,840	-		GFF5165	0.67	-3.1
5,156,848	+		GFF5165	0.68	-0.8
5,156,858	+		GFF5165	0.68	-0.7
5,156,858	-		GFF5165	0.68	+0.6
5,156,865	+		GFF5165	0.69	+1.1
5,156,875	+		GFF5165	0.69	-0.1
5,156,875	+		GFF5165	0.69	-0.1
5,156,875	+		GFF5165	0.69	-0.6
5,156,883	-		GFF5165	0.69	-0.4
5,156,883	-		GFF5165	0.69	+0.1
5,156,883	-		GFF5165	0.69	+0.4
5,156,883	-		GFF5165	0.69	+0.4
5,156,888	-		GFF5165	0.70	+0.3
5,156,892	-		GFF5165	0.70	-1.1
5,156,894	-		GFF5165	0.70	-0.1
5,156,899	+		GFF5165	0.70	-2.5
5,156,899	+		GFF5165	0.70	+0.2
5,156,899	+		GFF5165	0.70	-0.0
5,156,899	+		GFF5165	0.70	-1.5
5,156,899	+		GFF5165	0.70	-1.4
5,156,899	+		GFF5165	0.70	-0.3
5,156,899	+		GFF5165	0.70	-0.8
5,156,899	+		GFF5165	0.70	-0.5
5,156,899	+		GFF5165	0.70	+0.6
5,156,899	+		GFF5165	0.70	-1.1
5,156,907	-		GFF5165	0.70	-1.0
5,156,907	-		GFF5165	0.70	+0.8
5,156,907	-		GFF5165	0.70	-0.2
5,156,907	-		GFF5165	0.70	+0.6
5,156,907	-		GFF5165	0.70	-1.3
5,156,907	-		GFF5165	0.70	-0.5
5,156,907	-		GFF5165	0.70	+0.1
5,156,915	+		GFF5165	0.71	+1.2
5,156,915	+		GFF5165	0.71	-0.4
5,156,922	+		GFF5165	0.71	-0.1
5,156,922	+		GFF5165	0.71	-0.8
5,156,922	+		GFF5165	0.71	-0.7
5,156,923	+		GFF5165	0.71	-0.5
5,156,930	-		GFF5165	0.71	-0.5
5,156,930	-		GFF5165	0.71	+0.6
5,156,930	-		GFF5165	0.71	-0.9
5,156,931	-		GFF5165	0.71	-2.1
5,156,980	+		GFF5165	0.74	-1.4
5,156,980	+		GFF5165	0.74	-0.7
5,156,988	-		GFF5165	0.74	-1.7
5,156,996	+		GFF5165	0.74	-0.0
5,157,022	+		GFF5165	0.75	-0.1
5,157,026	-		GFF5165	0.76	+1.4
5,157,027	+		GFF5165	0.76	+0.7
5,157,035	-		GFF5165	0.76	-0.2
5,157,041	+		GFF5165	0.76	-0.2
5,157,048	-		GFF5165	0.76	-0.5
5,157,049	-		GFF5165	0.76	+0.7
5,157,085	+		GFF5165	0.78	-0.9
5,157,098	-		GFF5165	0.79	-0.6
5,157,098	-		GFF5165	0.79	+0.1
5,157,099	-		GFF5165	0.79	+0.7
5,157,103	-		GFF5165	0.79	-1.3
5,157,103	-		GFF5165	0.79	-0.0
5,157,103	-		GFF5165	0.79	+0.6
5,157,121	-		GFF5165	0.80	-1.5
5,157,125	+		GFF5165	0.80	-0.8
5,157,126	-		GFF5165	0.80	-1.5
5,157,133	-		GFF5165	0.80	-2.5
5,157,133	-		GFF5165	0.80	-0.8
5,157,149	+		GFF5165	0.81	+0.1
5,157,149	+		GFF5165	0.81	-0.8
5,157,152	-		GFF5165	0.81	-0.4
5,157,157	-		GFF5165	0.81	-1.7
5,157,157	-		GFF5165	0.81	+0.4
5,157,157	-		GFF5165	0.81	-1.3
5,157,176	-		GFF5165	0.82	-0.3
5,157,176	-		GFF5165	0.82	-0.2
5,157,191	-		GFF5165	0.83	-1.1
5,157,198	+		GFF5165	0.83	-2.1
5,157,204	+		GFF5165	0.83	-1.3
5,157,209	+		GFF5165	0.83	-2.5
5,157,217	-		GFF5165	0.84	-1.1
5,157,244	+		GFF5165	0.85	-0.9
5,157,251	-		GFF5165	0.85	+0.1
5,157,255	+		GFF5165	0.85	-0.5
5,157,267	+		GFF5165	0.86	-0.8
5,157,269	-		GFF5165	0.86	+0.0
5,157,269	-		GFF5165	0.86	+0.3
5,157,271	+		GFF5165	0.86	-1.0
5,157,305	-		GFF5165	0.88	+0.3
5,157,305	-		GFF5165	0.88	-0.0
5,157,308	+		GFF5165	0.88	+0.1
5,157,323	+		GFF5165	0.88	-0.2
5,157,323	+		GFF5165	0.88	+1.3
5,157,323	+		GFF5165	0.88	-0.3
5,157,323	+		GFF5165	0.88	-3.5
5,157,323	+		GFF5165	0.88	-1.5
5,157,323	+		GFF5165	0.88	+0.2
5,157,323	+		GFF5165	0.88	+0.8
5,157,323	+		GFF5165	0.88	-1.5
5,157,328	+		GFF5165	0.89	-0.7
5,157,328	+		GFF5165	0.89	-1.0
5,157,328	+		GFF5165	0.89	-0.8
5,157,331	-		GFF5165	0.89	-0.5
5,157,336	-		GFF5165	0.89	-1.5
5,157,336	-		GFF5165	0.89	-1.4
5,157,336	-		GFF5165	0.89	-1.6
5,157,381	+				+0.5
5,157,381	+				-0.9
5,157,381	+				+0.5
5,157,381	+				+0.3
5,157,381	+				+0.8
5,157,381	+				-0.5
5,157,419	+				-2.3
5,157,421	+				-0.3
5,157,427	-				-0.6
5,157,431	+				-2.3
5,157,432	-				-1.2
5,157,443	+				-0.1
5,157,457	+				-0.4
5,157,490	-				+0.7
5,157,495	+				-0.2
5,157,495	+				+0.7
5,157,496	-				+0.3
5,157,534	+				-0.7
5,157,547	-				+0.1
5,157,547	-				-0.9
5,157,547	-				+1.4
5,157,556	+				-1.5
5,157,562	+				-0.1
5,157,562	+				-0.8
5,157,562	+				-2.9
5,157,562	+				-0.7
5,157,562	+				-1.5
5,157,562	+				-0.7
5,157,562	+				-0.3
5,157,562	+				-1.2
5,157,562	+				-0.7
5,157,562	+				-2.0
5,157,562	+				+0.6
5,157,562	+				-0.5
5,157,562	+				-0.2
5,157,562	+				-0.7
5,157,562	+				-0.8
5,157,562	+				-0.4
5,157,562	+				-1.1
5,157,562	+				+0.9
5,157,562	+				-1.5
5,157,562	+				-0.4
5,157,562	+				-1.9
5,157,563	-				-0.1
5,157,564	-				-0.6
5,157,564	-				-1.8
5,157,570	-				-1.7
5,157,570	-				+0.3
5,157,570	-				-0.0
5,157,570	-				+0.4
5,157,570	-				-0.0
5,157,570	-				-0.3
5,157,570	-				-0.3
5,157,570	-				+0.4
5,157,570	-				-0.5
5,157,570	-				-1.0
5,157,570	-				-1.2
5,157,570	-				-0.6
5,157,570	-				-0.8
5,157,570	-				-2.1
5,157,570	-				+1.2
5,157,570	-				+0.1
5,157,570	-				-1.6
5,157,570	-				-1.3
5,157,570	-				+0.1
5,157,570	-				-0.2
5,157,571	-				-1.7
5,157,586	+				-0.8
5,157,587	-				-0.1
5,157,587	-				-1.3
5,157,595	+				-0.3
5,157,597	-				+0.7
5,157,603	-				-1.9
5,157,626	+				-0.4
5,157,626	+				-1.0
5,157,634	-				-0.9
5,157,638	+				-0.2
5,157,646	+				-1.1
5,157,648	+				-1.7
5,157,648	+				-1.2
5,157,648	+				-2.2
5,157,648	+				+0.1
5,157,648	+				+0.3
5,157,653	+				+0.2
5,157,656	-				-0.1
5,157,656	-				+1.1
5,157,656	-				-0.1
5,157,656	-				-0.2
5,157,656	-				+0.5
5,157,656	-				+0.2
5,157,663	+				-0.9
5,157,663	+				-0.6
5,157,663	+				+0.1
5,157,670	+				+0.3
5,157,671	-		GFF5166	0.10	+0.5
5,157,671	-		GFF5166	0.10	+0.0
5,157,671	-		GFF5166	0.10	+0.1
5,157,678	+		GFF5166	0.11	-1.7
5,157,678	+		GFF5166	0.11	+0.5
5,157,678	+		GFF5166	0.11	-1.1
5,157,689	-		GFF5166	0.12	-0.8
5,157,727	-		GFF5166	0.15	-0.1
5,157,777	-		GFF5166	0.20	-0.5
5,157,811	-		GFF5166	0.23	-1.0
5,157,811	-		GFF5166	0.23	-1.7
5,157,836	+		GFF5166	0.26	+0.2
5,157,836	+		GFF5166	0.26	-1.6
5,157,836	+		GFF5166	0.26	+0.2
5,157,836	+		GFF5166	0.26	-0.4
5,157,836	-		GFF5166	0.26	+0.3
5,157,836	-		GFF5166	0.26	+0.3
5,157,836	-		GFF5166	0.26	+0.5
5,157,836	-		GFF5166	0.26	-2.5
5,157,841	+		GFF5166	0.26	+0.4
5,157,844	-		GFF5166	0.26	-2.8
5,157,844	-		GFF5166	0.26	-1.4
5,157,844	-		GFF5166	0.26	-0.9
5,157,844	-		GFF5166	0.26	-1.7
5,157,844	-		GFF5166	0.26	-0.4
5,157,844	-		GFF5166	0.26	-0.3
5,157,844	-		GFF5166	0.26	-1.7
5,157,844	-		GFF5166	0.26	-0.4
5,157,844	-		GFF5166	0.26	+0.3
5,157,846	+		GFF5166	0.27	-1.6
5,157,846	+		GFF5166	0.27	-0.8
5,157,848	+		GFF5166	0.27	-0.5
5,157,848	+		GFF5166	0.27	-1.7
5,157,848	+		GFF5166	0.27	-0.1
5,157,848	+		GFF5166	0.27	+0.4
5,157,848	+		GFF5166	0.27	-0.3
5,157,849	-		GFF5166	0.27	-1.1
5,157,854	-		GFF5166	0.27	-1.7
5,157,856	-		GFF5166	0.27	-0.7
5,157,856	-		GFF5166	0.27	+0.1
5,157,856	-		GFF5166	0.27	-0.9
5,157,856	-		GFF5166	0.27	-0.1
5,157,856	-		GFF5166	0.27	+0.7
5,157,861	+		GFF5166	0.28	-1.1
5,157,869	-		GFF5166	0.29	-0.6
5,157,874	+		GFF5166	0.29	+0.2
5,157,876	+		GFF5166	0.29	-0.1
5,157,891	+		GFF5166	0.31	-0.9
5,157,891	+		GFF5166	0.31	+0.3
5,157,898	-		GFF5166	0.31	-0.7
5,157,909	+		GFF5166	0.32	+0.4
5,157,992	+		GFF5166	0.40	-2.2
5,157,998	+		GFF5166	0.41	-0.0
5,157,998	+		GFF5166	0.41	-2.0
5,157,998	+		GFF5166	0.41	+0.8
5,157,998	+		GFF5166	0.41	-2.6
5,157,998	+		GFF5166	0.41	-0.7
5,157,998	+		GFF5166	0.41	-0.7
5,158,006	-		GFF5166	0.42	-2.3
5,158,006	-		GFF5166	0.42	-0.9
5,158,006	-		GFF5166	0.42	-2.5
5,158,006	-		GFF5166	0.42	+0.5
5,158,011	+		GFF5166	0.42	-1.7
5,158,019	-		GFF5166	0.43	-0.0
5,158,024	+		GFF5166	0.43	+0.5
5,158,024	+		GFF5166	0.43	+0.6
5,158,024	+		GFF5166	0.43	-0.4
5,158,024	+		GFF5166	0.43	+0.2
5,158,024	+		GFF5166	0.43	-1.0
5,158,024	+		GFF5166	0.43	-1.7
5,158,024	+		GFF5166	0.43	-0.9
5,158,034	+		GFF5166	0.44	-1.8
5,158,044	+		GFF5166	0.45	-0.3
5,158,057	-		GFF5166	0.46	+1.4
5,158,062	-		GFF5166	0.47	-0.9
5,158,063	+		GFF5166	0.47	-0.3
5,158,069	-		GFF5166	0.48	-0.7
5,158,071	+		GFF5166	0.48	-1.3
5,158,076	+		GFF5166	0.48	+0.4
5,158,076	+		GFF5166	0.48	-0.2
5,158,076	+		GFF5166	0.48	-0.9
5,158,079	+		GFF5166	0.49	+0.1
5,158,079	-		GFF5166	0.49	-2.8
5,158,081	+		GFF5166	0.49	-0.6
5,158,084	-		GFF5166	0.49	+0.5
5,158,084	-		GFF5166	0.49	-0.2
5,158,087	-		GFF5166	0.49	-0.4
5,158,089	-		GFF5166	0.49	-1.8
5,158,089	-		GFF5166	0.49	+0.1
5,158,094	+		GFF5166	0.50	-0.1
5,158,111	+		GFF5166	0.52	-0.8
5,158,111	+		GFF5166	0.52	-1.5
5,158,111	+		GFF5166	0.52	+0.7
5,158,111	+		GFF5166	0.52	+0.3
5,158,119	-		GFF5166	0.52	-0.9
5,158,126	+		GFF5166	0.53	-0.8
5,158,126	+		GFF5166	0.53	+0.9
5,158,126	+		GFF5166	0.53	-2.0
5,158,134	-		GFF5166	0.54	-1.4
5,158,134	-		GFF5166	0.54	+0.7
5,158,134	-		GFF5166	0.54	-0.2
5,158,134	-		GFF5166	0.54	-0.1
5,158,134	-		GFF5166	0.54	-1.0
5,158,202	+		GFF5166	0.60	-0.0
5,158,220	+		GFF5166	0.62	-0.5
5,158,228	-		GFF5166	0.63	+0.3
5,158,228	-		GFF5166	0.63	-1.2
5,158,250	-		GFF5166	0.65	-0.0
5,158,256	-		GFF5166	0.65	-0.4
5,158,278	+		GFF5166	0.67	+0.0
5,158,278	+		GFF5166	0.67	+0.8
5,158,278	+		GFF5166	0.67	-0.9
5,158,278	+		GFF5166	0.67	-1.1
5,158,278	+		GFF5166	0.67	-0.2
5,158,286	-		GFF5166	0.68	-0.8
5,158,301	+		GFF5166	0.69	-0.8
5,158,301	-		GFF5166	0.69	-0.1
5,158,308	-		GFF5166	0.70	-0.8
5,158,319	-		GFF5166	0.71	+0.8
5,158,334	-		GFF5166	0.73	-1.3
5,158,345	+		GFF5166	0.74	-1.2
5,158,360	-		GFF5166	0.75	-2.4
5,158,360	-		GFF5166	0.75	-0.5
5,158,361	+		GFF5166	0.75	-0.1
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5,158,476	-		GFF5166	0.86	-0.7
5,158,476	-		GFF5166	0.86	-3.1
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5,158,499	+		GFF5166	0.88	+0.1
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5,158,511	+		GFF5166	0.89	-0.6
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5,158,529	-				-2.8
5,158,534	+				+0.1
5,158,542	-				-0.3
5,158,576	-				-0.1
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5,158,597	+				-0.4
5,158,603	-				-0.8
5,158,605	-				-1.0
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5,158,607	+				+0.8
5,158,608	+				-1.0
5,158,633	+				-2.6
5,158,641	-				+0.5
5,158,653	-				+0.1
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5,158,672	+				-0.9
5,158,703	+				-0.9
5,158,711	-				+0.3
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5,158,716	+				-0.8
5,158,716	+				+1.0
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5,158,716	-				-0.6
5,158,721	-				+0.1
5,158,724	-				+0.7
5,158,733	+				-1.9
5,158,741	-				-0.6
5,158,741	-				-2.7
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5,158,755	+				-0.4
5,158,755	+				-0.9
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5,158,760	+				+0.1
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5,158,763	-				-2.2
5,158,763	-				+0.3
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5,158,763	-				-0.5
5,158,763	-				-2.0
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5,158,776	-				-2.5
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5,158,797	-				-2.5
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5,158,936	-		GFF5167	0.22	-2.1
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