Strain Fitness in Sphingobium sp. HT1-2 around GFF5099

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,086,551	-		GFF5098	0.43	-1.8
5,086,581	+		GFF5098	0.45	+0.5
5,086,589	+		GFF5098	0.45	-0.3
5,086,589	+		GFF5098	0.45	-1.8
5,086,597	-		GFF5098	0.46	-1.9
5,086,602	+		GFF5098	0.46	-1.2
5,086,602	+		GFF5098	0.46	+0.8
5,086,602	+		GFF5098	0.46	+0.4
5,086,602	+		GFF5098	0.46	-1.9
5,086,602	+		GFF5098	0.46	+0.4
5,086,602	+		GFF5098	0.46	-1.4
5,086,602	+		GFF5098	0.46	-0.6
5,086,602	+		GFF5098	0.46	-2.3
5,086,603	-		GFF5098	0.46	+1.6
5,086,610	-		GFF5098	0.47	-2.0
5,086,610	-		GFF5098	0.47	-0.8
5,086,610	-		GFF5098	0.47	-1.5
5,086,610	-		GFF5098	0.47	-0.5
5,086,610	-		GFF5098	0.47	-0.4
5,086,619	+		GFF5098	0.47	-0.7
5,086,636	+		GFF5098	0.48	-0.9
5,086,638	+		GFF5098	0.48	-2.6
5,086,641	+		GFF5098	0.48	+0.7
5,086,646	-		GFF5098	0.49	-1.1
5,086,648	+		GFF5098	0.49	-0.7
5,086,648	+		GFF5098	0.49	+0.0
5,086,648	-		GFF5098	0.49	-0.4
5,086,649	-		GFF5098	0.49	-1.5
5,086,656	-		GFF5098	0.49	-0.5
5,086,656	-		GFF5098	0.49	-1.0
5,086,657	-		GFF5098	0.49	-1.3
5,086,657	-		GFF5098	0.49	+0.5
5,086,704	+		GFF5098	0.52	-1.3
5,086,704	+		GFF5098	0.52	+0.4
5,086,704	+		GFF5098	0.52	-1.4
5,086,704	+		GFF5098	0.52	-0.9
5,086,704	+		GFF5098	0.52	-0.6
5,086,704	+		GFF5098	0.52	+0.1
5,086,704	+		GFF5098	0.52	+0.7
5,086,704	+		GFF5098	0.52	+0.4
5,086,704	+		GFF5098	0.52	+0.5
5,086,704	+		GFF5098	0.52	-1.4
5,086,704	+		GFF5098	0.52	-0.7
5,086,704	+		GFF5098	0.52	+0.5
5,086,704	+		GFF5098	0.52	+0.2
5,086,704	+		GFF5098	0.52	-1.3
5,086,704	+		GFF5098	0.52	-1.3
5,086,704	+		GFF5098	0.52	-0.5
5,086,704	+		GFF5098	0.52	-1.7
5,086,704	+		GFF5098	0.52	+0.6
5,086,704	+		GFF5098	0.52	-0.1
5,086,712	-		GFF5098	0.52	-2.4
5,086,712	-		GFF5098	0.52	-1.1
5,086,712	-		GFF5098	0.52	+0.2
5,086,712	-		GFF5098	0.52	+0.9
5,086,712	-		GFF5098	0.52	-0.1
5,086,712	-		GFF5098	0.52	+0.1
5,086,712	-		GFF5098	0.52	-1.1
5,086,712	-		GFF5098	0.52	-1.3
5,086,712	-		GFF5098	0.52	-0.7
5,086,712	-		GFF5098	0.52	-1.1
5,086,712	-		GFF5098	0.52	+0.3
5,086,712	-		GFF5098	0.52	+0.3
5,086,712	-		GFF5098	0.52	+0.7
5,086,712	-		GFF5098	0.52	+0.3
5,086,712	-		GFF5098	0.52	-2.6
5,086,712	-		GFF5098	0.52	-0.9
5,086,712	-		GFF5098	0.52	-1.3
5,086,712	-		GFF5098	0.52	-1.1
5,086,712	-		GFF5098	0.52	+0.7
5,086,714	+		GFF5098	0.52	+0.0
5,086,727	+		GFF5098	0.53	+0.0
5,086,727	+		GFF5098	0.53	-0.3
5,086,727	+		GFF5098	0.53	+0.7
5,086,727	+		GFF5098	0.53	-0.9
5,086,727	+		GFF5098	0.53	-0.5
5,086,727	+		GFF5098	0.53	-0.7
5,086,727	+		GFF5098	0.53	-0.5
5,086,733	+		GFF5098	0.53	-0.1
5,086,735	-		GFF5098	0.54	-1.6
5,086,735	-		GFF5098	0.54	-1.1
5,086,735	-		GFF5098	0.54	-0.4
5,086,735	-		GFF5098	0.54	+0.6
5,086,781	+		GFF5098	0.56	-0.2
5,086,781	+		GFF5098	0.56	+0.0
5,086,789	-		GFF5098	0.57	+0.6
5,086,806	+		GFF5098	0.58	+1.3
5,086,810	+		GFF5098	0.58	+0.4
5,086,814	-		GFF5098	0.58	-0.7
5,086,814	-		GFF5098	0.58	-0.8
5,086,814	-		GFF5098	0.58	-0.4
5,086,818	-		GFF5098	0.58	+0.3
5,086,822	-		GFF5098	0.59	-0.3
5,086,824	+		GFF5098	0.59	-2.9
5,086,824	+		GFF5098	0.59	-0.2
5,086,824	+		GFF5098	0.59	-2.2
5,086,824	+		GFF5098	0.59	-1.6
5,086,825	+		GFF5098	0.59	-1.5
5,086,832	-		GFF5098	0.59	-0.8
5,086,832	-		GFF5098	0.59	-0.8
5,086,832	-		GFF5098	0.59	-1.0
5,086,856	+		GFF5098	0.60	+0.4
5,086,868	+		GFF5098	0.61	-0.8
5,086,868	+		GFF5098	0.61	+0.2
5,086,868	+		GFF5098	0.61	-0.5
5,086,868	+		GFF5098	0.61	-2.6
5,086,868	+		GFF5098	0.61	+0.3
5,086,868	+		GFF5098	0.61	-2.5
5,086,868	+		GFF5098	0.61	-0.3
5,086,870	+		GFF5098	0.61	-1.6
5,086,875	+		GFF5098	0.62	-0.3
5,086,876	-		GFF5098	0.62	-1.3
5,086,876	-		GFF5098	0.62	-0.3
5,086,876	-		GFF5098	0.62	-0.8
5,086,876	-		GFF5098	0.62	-1.6
5,086,876	-		GFF5098	0.62	+0.7
5,086,876	-		GFF5098	0.62	-0.5
5,086,876	-		GFF5098	0.62	-1.1
5,086,876	-		GFF5098	0.62	+0.2
5,086,876	-		GFF5098	0.62	-2.0
5,086,876	-		GFF5098	0.62	-1.2
5,086,878	-		GFF5098	0.62	-0.6
5,086,878	-		GFF5098	0.62	+0.1
5,086,904	+		GFF5098	0.63	-0.3
5,086,912	-		GFF5098	0.64	+0.1
5,086,912	-		GFF5098	0.64	+0.4
5,086,934	+		GFF5098	0.65	-1.8
5,086,939	+		GFF5098	0.65	-0.7
5,086,944	+		GFF5098	0.65	-0.6
5,086,944	+		GFF5098	0.65	+0.2
5,086,952	-		GFF5098	0.66	-2.1
5,086,956	+		GFF5098	0.66	-0.1
5,086,958	+		GFF5098	0.66	+0.1
5,086,959	-		GFF5098	0.66	-0.0
5,086,963	+		GFF5098	0.67	-0.9
5,086,964	-		GFF5098	0.67	-0.4
5,086,969	-		GFF5098	0.67	-0.4
5,086,971	-		GFF5098	0.67	+0.0
5,086,978	+		GFF5098	0.67	-0.1
5,086,978	+		GFF5098	0.67	-0.4
5,086,979	+		GFF5098	0.67	-1.6
5,086,986	-		GFF5098	0.68	-0.2
5,086,986	-		GFF5098	0.68	-0.8
5,086,986	-		GFF5098	0.68	-0.2
5,086,986	-		GFF5098	0.68	-0.2
5,086,986	-		GFF5098	0.68	+0.2
5,086,991	-		GFF5098	0.68	+0.3
5,087,017	+		GFF5098	0.70	-0.7
5,087,029	+		GFF5098	0.70	-0.7
5,087,053	+		GFF5098	0.72	-2.0
5,087,075	-		GFF5098	0.73	-0.9
5,087,085	-		GFF5098	0.73	-0.5
5,087,085	-		GFF5098	0.73	-0.0
5,087,086	-		GFF5098	0.74	+1.0
5,087,094	-		GFF5098	0.74	-1.1
5,087,105	+		GFF5098	0.75	-0.5
5,087,113	-		GFF5098	0.75	-0.1
5,087,115	+		GFF5098	0.75	-1.1
5,087,136	+		GFF5098	0.76	-0.3
5,087,143	-		GFF5098	0.77	-0.7
5,087,149	-		GFF5098	0.77	-2.4
5,087,153	+		GFF5098	0.77	-1.9
5,087,157	+		GFF5098	0.78	-2.5
5,087,163	+		GFF5098	0.78	-1.9
5,087,165	-		GFF5098	0.78	+0.5
5,087,166	-		GFF5098	0.78	-0.5
5,087,171	+		GFF5098	0.78	-1.2
5,087,178	+		GFF5098	0.79	-0.1
5,087,179	-		GFF5098	0.79	-0.9
5,087,179	-		GFF5098	0.79	-2.3
5,087,179	-		GFF5098	0.79	-1.3
5,087,186	-		GFF5098	0.79	+0.3
5,087,188	+		GFF5098	0.79	-1.1
5,087,196	-		GFF5098	0.80	-0.5
5,087,211	-		GFF5098	0.81	-2.2
5,087,217	+		GFF5098	0.81	-0.6
5,087,219	-		GFF5098	0.81	-0.6
5,087,238	+		GFF5098	0.82	-0.7
5,087,238	+		GFF5098	0.82	-0.0
5,087,243	+		GFF5098	0.82	-0.1
5,087,246	-		GFF5098	0.83	-0.4
5,087,249	-		GFF5098	0.83	-0.4
5,087,249	-		GFF5098	0.83	+0.3
5,087,251	+		GFF5098	0.83	+0.1
5,087,294	+		GFF5098	0.85	-2.1
5,087,294	+		GFF5098	0.85	+1.6
5,087,294	+		GFF5098	0.85	-1.5
5,087,302	-		GFF5098	0.86	-1.9
5,087,302	-		GFF5098	0.86	+0.2
5,087,302	-		GFF5098	0.86	-2.2
5,087,306	+		GFF5098	0.86	-0.6
5,087,306	+		GFF5098	0.86	-1.4
5,087,311	+		GFF5098	0.86	-0.2
5,087,311	+		GFF5098	0.86	-1.3
5,087,312	+		GFF5098	0.86	+0.4
5,087,314	-		GFF5098	0.86	-0.6
5,087,319	+		GFF5098	0.87	-1.8
5,087,321	+		GFF5098	0.87	+0.1
5,087,321	+		GFF5098	0.87	-0.1
5,087,324	-		GFF5098	0.87	-1.5
5,087,326	+		GFF5098	0.87	-1.5
5,087,368	-		GFF5098	0.90	-0.9
5,087,381	+				-1.2
5,087,412	+				-0.1
5,087,412	+				-0.4
5,087,420	-				+1.5
5,087,426	-				+0.7
5,087,430	+				+0.7
5,087,432	-				-0.4
5,087,438	-				-2.6
5,087,457	+				-2.3
5,087,465	-				-0.5
5,087,465	-				-0.3
5,087,491	+				+0.8
5,087,499	-				-1.0
5,087,523	+				-3.2
5,087,537	-				+0.9
5,087,546	+				+0.3
5,087,553	+				+0.9
5,087,587	-				-0.0
5,087,595	+				+0.2
5,087,595	+				-0.3
5,087,605	+				+0.2
5,087,605	+				-0.8
5,087,605	+				-1.0
5,087,607	+				-0.4
5,087,613	-				-0.1
5,087,613	-				-0.4
5,087,620	+				-1.8
5,087,628	-				-0.3
5,087,647	-				-1.5
5,087,672	-		GFF5099	0.12	-0.2
5,087,679	-		GFF5099	0.13	-1.6
5,087,693	+		GFF5099	0.14	+0.4
5,087,710	-		GFF5099	0.16	-0.7
5,087,722	-		GFF5099	0.17	-0.8
5,087,728	+		GFF5099	0.18	-1.4
5,087,733	+		GFF5099	0.18	-1.1
5,087,733	+		GFF5099	0.18	-0.5
5,087,738	+		GFF5099	0.19	-1.5
5,087,760	+		GFF5099	0.21	-0.2
5,087,762	+		GFF5099	0.21	-1.9
5,087,762	+		GFF5099	0.21	-0.7
5,087,762	+		GFF5099	0.21	-0.4
5,087,762	+		GFF5099	0.21	-0.4
5,087,762	+		GFF5099	0.21	-0.2
5,087,762	+		GFF5099	0.21	+0.1
5,087,762	+		GFF5099	0.21	+0.2
5,087,767	+		GFF5099	0.22	-1.0
5,087,768	-		GFF5099	0.22	-0.2
5,087,770	-		GFF5099	0.22	-1.5
5,087,770	-		GFF5099	0.22	-0.0
5,087,770	-		GFF5099	0.22	-1.8
5,087,770	-		GFF5099	0.22	-0.0
5,087,770	-		GFF5099	0.22	-0.6
5,087,770	-		GFF5099	0.22	-1.9
5,087,770	-		GFF5099	0.22	+0.4
5,087,770	-		GFF5099	0.22	+0.3
5,087,772	+		GFF5099	0.22	-0.7
5,087,772	+		GFF5099	0.22	-0.7
5,087,772	+		GFF5099	0.22	-0.4
5,087,772	+		GFF5099	0.22	-0.4
5,087,772	+		GFF5099	0.22	-0.2
5,087,778	+		GFF5099	0.23	-0.1
5,087,780	-		GFF5099	0.23	+0.1
5,087,780	-		GFF5099	0.23	+0.4
5,087,785	+		GFF5099	0.23	-0.6
5,087,785	+		GFF5099	0.23	-1.3
5,087,785	+		GFF5099	0.23	-1.0
5,087,785	+		GFF5099	0.23	-1.7
5,087,785	+		GFF5099	0.23	-1.3
5,087,785	+		GFF5099	0.23	-0.7
5,087,785	+		GFF5099	0.23	-1.0
5,087,790	+		GFF5099	0.24	-1.8
5,087,793	-		GFF5099	0.24	-1.5
5,087,793	-		GFF5099	0.24	+0.2
5,087,793	-		GFF5099	0.24	-0.2
5,087,793	-		GFF5099	0.24	-0.3
5,087,793	-		GFF5099	0.24	-1.1
5,087,793	-		GFF5099	0.24	-0.8
5,087,795	+		GFF5099	0.24	+0.4
5,087,795	+		GFF5099	0.24	-2.5
5,087,795	+		GFF5099	0.24	-2.5
5,087,800	+		GFF5099	0.25	-2.3
5,087,830	-		GFF5099	0.28	-0.7
5,087,830	-		GFF5099	0.28	-0.9
5,087,839	+		GFF5099	0.29	-1.8
5,087,839	+		GFF5099	0.29	-1.2
5,087,844	+		GFF5099	0.29	+0.1
5,087,844	+		GFF5099	0.29	-1.1
5,087,847	-		GFF5099	0.30	-1.7
5,087,849	-		GFF5099	0.30	+0.5
5,087,852	-		GFF5099	0.30	+0.2
5,087,857	+		GFF5099	0.31	-1.0
5,087,857	-		GFF5099	0.31	+0.1
5,087,877	+		GFF5099	0.33	-2.2
5,087,895	+		GFF5099	0.34	-2.4
5,087,901	-		GFF5099	0.35	-0.6
5,087,906	-		GFF5099	0.35	-1.8
5,087,906	-		GFF5099	0.35	-0.5
5,087,914	-		GFF5099	0.36	-0.6
5,087,924	-		GFF5099	0.37	-1.1
5,087,924	-		GFF5099	0.37	-1.0
5,087,924	-		GFF5099	0.37	-2.3
5,087,924	-		GFF5099	0.37	+0.4
5,087,941	+		GFF5099	0.39	-1.6
5,087,941	+		GFF5099	0.39	-0.4
5,087,950	+		GFF5099	0.40	-1.2
5,087,952	+		GFF5099	0.40	-1.8
5,087,960	+		GFF5099	0.41	-1.6
5,087,960	+		GFF5099	0.41	-0.8
5,087,960	-		GFF5099	0.41	-1.5
5,087,971	+		GFF5099	0.42	-2.3
5,087,978	-		GFF5099	0.43	+0.4
5,087,996	+		GFF5099	0.44	-0.2
5,088,012	+		GFF5099	0.46	-1.3
5,088,013	-		GFF5099	0.46	-0.1
5,088,084	-		GFF5099	0.53	-0.5
5,088,084	-		GFF5099	0.53	-0.5
5,088,094	+		GFF5099	0.54	-0.4
5,088,138	-		GFF5099	0.58	-1.6
5,088,138	-		GFF5099	0.58	-1.9
5,088,145	-		GFF5099	0.59	-1.0
5,088,147	+		GFF5099	0.59	-1.3
5,088,147	+		GFF5099	0.59	-0.3
5,088,147	+		GFF5099	0.59	-0.3
5,088,147	+		GFF5099	0.59	-0.8
5,088,147	+		GFF5099	0.59	-1.4
5,088,147	+		GFF5099	0.59	-0.7
5,088,147	+		GFF5099	0.59	-1.5
5,088,147	+		GFF5099	0.59	-0.4
5,088,147	+		GFF5099	0.59	+1.1
5,088,147	+		GFF5099	0.59	-0.2
5,088,147	+		GFF5099	0.59	-1.9
5,088,155	-		GFF5099	0.60	+0.3
5,088,155	-		GFF5099	0.60	-1.6
5,088,155	-		GFF5099	0.60	-1.9
5,088,155	-		GFF5099	0.60	-1.2
5,088,155	-		GFF5099	0.60	-0.1
5,088,155	-		GFF5099	0.60	-0.9
5,088,155	-		GFF5099	0.60	-0.5
5,088,214	-		GFF5099	0.66	-1.2
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5,088,244	-		GFF5099	0.69	-3.4
5,088,244	-		GFF5099	0.69	-1.2
5,088,244	-		GFF5099	0.69	-2.2
5,088,246	+		GFF5099	0.69	-1.1
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5,088,387	+		GFF5099	0.83	-2.9
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5,088,395	-		GFF5099	0.84	-2.1
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5,088,398	+		GFF5099	0.84	-0.3
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5,088,423	+		GFF5099	0.87	-1.0
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5,088,459	+				-1.9
5,088,461	+				+0.1
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5,088,475	+				-0.2
5,088,476	+				+0.0
5,088,482	+				+0.0
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5,088,489	-				-0.5
5,088,489	-				-0.4
5,088,503	-				+0.1
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5,088,535	+				-0.8
5,088,535	+				-0.2
5,088,535	+				-1.1
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5,088,545	-				-1.3
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5,088,566	-				-2.3
5,088,566	-				-1.1
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5,088,614	+				-2.3
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5,088,635	-				-0.2
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