Strain Fitness in Sphingobium sp. HT1-2 around GFF5065

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,060,550	-		GFF5064	0.18	-0.8
5,060,587	+		GFF5064	0.21	+0.3
5,060,592	+		GFF5064	0.21	+0.3
5,060,598	+		GFF5064	0.22	-0.0
5,060,606	-		GFF5064	0.22	-0.1
5,060,626	-		GFF5064	0.24	-0.2
5,060,658	-		GFF5064	0.27	-0.4
5,060,665	+		GFF5064	0.27	-0.7
5,060,665	+		GFF5064	0.27	+1.7
5,060,665	+		GFF5064	0.27	-0.4
5,060,665	+		GFF5064	0.27	+1.3
5,060,665	+		GFF5064	0.27	+1.0
5,060,665	+		GFF5064	0.27	-0.1
5,060,665	+		GFF5064	0.27	+0.2
5,060,665	+		GFF5064	0.27	-0.9
5,060,665	+		GFF5064	0.27	-0.4
5,060,665	+		GFF5064	0.27	+1.0
5,060,673	-		GFF5064	0.28	-0.4
5,060,673	-		GFF5064	0.28	+1.4
5,060,673	-		GFF5064	0.28	+0.4
5,060,753	-		GFF5064	0.34	+0.6
5,060,753	-		GFF5064	0.34	+0.0
5,060,760	+		GFF5064	0.35	-0.1
5,060,787	+		GFF5064	0.37	+0.7
5,060,804	+		GFF5064	0.39	+0.1
5,060,822	-		GFF5064	0.40	+0.9
5,060,833	+		GFF5064	0.41	-0.2
5,060,841	+		GFF5064	0.42	+0.2
5,060,856	-		GFF5064	0.43	+0.1
5,060,856	-		GFF5064	0.43	+0.2
5,060,856	-		GFF5064	0.43	-0.1
5,060,881	+		GFF5064	0.45	-0.4
5,060,965	+		GFF5064	0.52	+0.4
5,060,979	+		GFF5064	0.53	-1.6
5,060,979	+		GFF5064	0.53	-0.3
5,060,987	-		GFF5064	0.54	-0.1
5,060,987	-		GFF5064	0.54	-0.8
5,060,987	-		GFF5064	0.54	+1.2
5,060,989	+		GFF5064	0.54	-0.3
5,061,007	+		GFF5064	0.55	+0.5
5,061,046	+		GFF5064	0.58	+2.0
5,061,081	+		GFF5064	0.61	-0.0
5,061,081	+		GFF5064	0.61	+0.6
5,061,081	+		GFF5064	0.61	-0.4
5,061,081	+		GFF5064	0.61	+1.1
5,061,086	+		GFF5064	0.62	+0.2
5,061,089	+		GFF5064	0.62	-0.6
5,061,089	+		GFF5064	0.62	+0.1
5,061,089	-		GFF5064	0.62	+0.5
5,061,089	-		GFF5064	0.62	+0.8
5,061,089	-		GFF5064	0.62	+0.0
5,061,089	-		GFF5064	0.62	-0.8
5,061,089	-		GFF5064	0.62	+1.7
5,061,089	-		GFF5064	0.62	-1.1
5,061,094	-		GFF5064	0.62	-0.7
5,061,099	-		GFF5064	0.63	+0.7
5,061,099	-		GFF5064	0.63	-0.6
5,061,118	+		GFF5064	0.64	-2.9
5,061,128	+		GFF5064	0.65	+0.9
5,061,131	-		GFF5064	0.65	-1.4
5,061,141	+		GFF5064	0.66	+1.5
5,061,141	+		GFF5064	0.66	+0.1
5,061,141	+		GFF5064	0.66	+0.4
5,061,141	+		GFF5064	0.66	-0.3
5,061,149	-		GFF5064	0.67	+0.8
5,061,149	-		GFF5064	0.67	-0.2
5,061,149	-		GFF5064	0.67	+1.1
5,061,149	-		GFF5064	0.67	-0.7
5,061,149	-		GFF5064	0.67	-0.5
5,061,149	-		GFF5064	0.67	+0.9
5,061,149	-		GFF5064	0.67	+0.8
5,061,149	-		GFF5064	0.67	+0.8
5,061,155	+		GFF5064	0.67	+1.4
5,061,163	-		GFF5064	0.68	+0.5
5,061,186	-		GFF5064	0.70	+0.0
5,061,199	+		GFF5064	0.71	-0.6
5,061,207	-		GFF5064	0.72	+0.0
5,061,220	+		GFF5064	0.73	+0.0
5,061,226	-		GFF5064	0.73	+0.5
5,061,228	+		GFF5064	0.73	-0.5
5,061,317	+		GFF5064	0.81	+0.4
5,061,325	-		GFF5064	0.81	+0.5
5,061,333	+		GFF5064	0.82	+0.7
5,061,341	-		GFF5064	0.83	-0.7
5,061,341	-		GFF5064	0.83	+0.4
5,061,341	-		GFF5064	0.83	-0.8
5,061,373	+		GFF5064	0.85	+0.6
5,061,380	+		GFF5064	0.86	-0.6
5,061,387	-		GFF5064	0.87	+1.0
5,061,412	-		GFF5064	0.89	+1.2
5,061,430	-				-0.9
5,061,431	-				-0.0
5,061,452	-				-2.2
5,061,452	-				+0.1
5,061,453	+				-1.8
5,061,532	-				+0.2
5,061,535	+				+0.5
5,061,536	-				-0.7
5,061,543	-				-1.7
5,061,556	+				+0.3
5,061,568	-				+0.4
5,061,568	-				+1.2
5,061,579	-				-0.9
5,061,592	+				-1.9
5,061,600	+				-1.2
5,061,601	-				-1.0
5,061,608	-				+0.4
5,061,608	-				-2.1
5,061,611	+				-0.6
5,061,615	+				+0.7
5,061,632	+				-1.3
5,061,636	+		GFF5065	0.10	+0.7
5,061,644	-		GFF5065	0.11	-1.1
5,061,644	-		GFF5065	0.11	+0.1
5,061,644	-		GFF5065	0.11	+1.1
5,061,644	-		GFF5065	0.11	-1.3
5,061,644	-		GFF5065	0.11	+1.2
5,061,644	-		GFF5065	0.11	+1.1
5,061,644	-		GFF5065	0.11	+0.6
5,061,646	+		GFF5065	0.11	+0.0
5,061,646	+		GFF5065	0.11	-0.4
5,061,654	-		GFF5065	0.12	+1.8
5,061,656	+		GFF5065	0.13	-1.6
5,061,656	+		GFF5065	0.13	-0.7
5,061,656	+		GFF5065	0.13	-0.4
5,061,656	+		GFF5065	0.13	-0.0
5,061,656	+		GFF5065	0.13	-0.4
5,061,656	+		GFF5065	0.13	-0.9
5,061,656	+		GFF5065	0.13	+0.2
5,061,664	-		GFF5065	0.13	+0.8
5,061,664	-		GFF5065	0.13	+0.1
5,061,664	-		GFF5065	0.13	-0.4
5,061,664	-		GFF5065	0.13	+0.7
5,061,664	-		GFF5065	0.13	+1.5
5,061,664	-		GFF5065	0.13	+0.4
5,061,664	-		GFF5065	0.13	+1.2
5,061,681	+		GFF5065	0.15	+0.8
5,061,694	+		GFF5065	0.17	+0.2
5,061,710	-		GFF5065	0.19	+0.1
5,061,722	+		GFF5065	0.20	+0.2
5,061,746	+		GFF5065	0.23	-0.9
5,061,761	-		GFF5065	0.25	+0.7
5,061,777	+		GFF5065	0.27	+0.2
5,061,777	+		GFF5065	0.27	+0.9
5,061,777	+		GFF5065	0.27	-0.4
5,061,777	+		GFF5065	0.27	+0.3
5,061,838	-		GFF5065	0.34	+0.6
5,061,878	+		GFF5065	0.38	-1.1
5,061,892	+		GFF5065	0.40	-0.3
5,061,908	+		GFF5065	0.42	-2.1
5,061,908	+		GFF5065	0.42	-1.2
5,061,916	-		GFF5065	0.43	+0.1
5,061,916	-		GFF5065	0.43	-0.4
5,061,916	-		GFF5065	0.43	-0.6
5,061,946	+		GFF5065	0.46	+0.5
5,061,968	+		GFF5065	0.49	-0.0
5,061,973	-		GFF5065	0.49	+0.4
5,061,974	+		GFF5065	0.49	+0.3
5,061,976	-		GFF5065	0.49	+0.5
5,061,976	-		GFF5065	0.49	-1.9
5,061,976	-		GFF5065	0.49	-0.3
5,061,976	-		GFF5065	0.49	+0.4
5,061,994	+		GFF5065	0.52	+0.6
5,062,020	-		GFF5065	0.55	+0.7
5,062,020	-		GFF5065	0.55	+0.4
5,062,098	-		GFF5065	0.64	+0.2
5,062,155	-		GFF5065	0.70	+0.6
5,062,155	-		GFF5065	0.70	-0.5
5,062,155	-		GFF5065	0.70	+0.5
5,062,198	-		GFF5065	0.75	+0.1
5,062,231	-		GFF5065	0.79	-1.1
5,062,232	-		GFF5065	0.79	+0.5
5,062,232	-		GFF5065	0.79	+0.7
5,062,261	+		GFF5065	0.82	+0.1
5,062,274	+		GFF5065	0.84	-1.2
5,062,299	-		GFF5065	0.87	+0.4
5,062,339	-				+0.8
5,062,345	-				+0.5
5,062,345	-				-0.1
5,062,345	-				+0.8
5,062,345	-				+0.7
5,062,346	+				-0.1
5,062,352	-				+1.2
5,062,354	-				+0.7
5,062,372	-				+0.6
5,062,379	+				+0.1
5,062,392	+				-0.7
5,062,393	+				+1.0
5,062,522	+				+0.9
5,062,532	+				-0.1
5,062,540	-				+0.4
5,062,568	+		GFF5066	0.15	+0.3
5,062,588	+		GFF5066	0.19	+0.6
5,062,602	+		GFF5066	0.22	+0.1
5,062,610	-		GFF5066	0.24	+0.3
5,062,610	-		GFF5066	0.24	+0.1
5,062,610	-		GFF5066	0.24	+0.2
5,062,635	+		GFF5066	0.29	-0.1
5,062,635	+		GFF5066	0.29	+0.4
5,062,643	-		GFF5066	0.31	-1.2
5,062,683	+		GFF5066	0.39	-2.0
5,062,699	-		GFF5066	0.42	+0.5
5,062,699	-		GFF5066	0.42	-0.1
5,062,729	+		GFF5066	0.48	-1.2
5,062,804	-		GFF5066	0.64	-0.6
5,062,806	-		GFF5066	0.64	-0.9
5,062,825	+		GFF5066	0.68	+0.2
5,062,839	+		GFF5066	0.71	-0.1
5,062,902	-		GFF5066	0.84	-0.8
5,062,912	+		GFF5066	0.86	+0.9
5,062,941	+				+0.3
5,062,941	+				+0.1
5,062,953	+				-1.1
5,062,953	+				-2.1
5,062,961	-				+0.9
5,062,961	-				-2.0
5,062,969	-				-0.2
5,062,980	-				+1.1
5,063,001	+				+1.1
5,063,001	+				+0.5
5,063,001	+				+0.4
5,063,001	+				+0.5
5,063,001	+				+0.5
5,063,001	+				+0.5
5,063,001	+				-0.8
5,063,006	+				+0.3
5,063,006	+				+1.2
5,063,006	+				+1.6
5,063,006	+				+0.8
5,063,006	+				-0.0
5,063,006	+				-0.3
5,063,009	-				-1.8
5,063,009	-				-0.7
5,063,013	+				-0.8
5,063,014	-				-0.4
5,063,014	-				-1.1
5,063,014	-				+0.3
5,063,014	-				-0.8
5,063,021	-				-0.7
5,063,024	-				+0.6
5,063,061	+				-0.5
5,063,072	-				-0.1
5,063,141	+				+0.6
5,063,168	+				+0.4
5,063,169	+				-1.2
5,063,171	+				+0.2
5,063,171	+				-1.7
5,063,177	-				-0.3
5,063,248	-				+0.0
5,063,260	-				+0.2
5,063,260	-				+0.3
5,063,260	-				+0.8
5,063,274	+				-0.9
5,063,282	-				+0.0
5,063,292	+				+0.1
5,063,338	-				+0.7
5,063,345	+				-0.6
5,063,345	+				+0.2
5,063,353	-				-1.3
5,063,353	-				-0.5
5,063,353	-				-0.1
5,063,353	-				-0.5
5,063,407	+		GFF5067	0.18	+1.1