Strain Fitness in Sphingobium sp. HT1-2 around GFF5060

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,056,422	+		GFF5059	0.47	+1.3
5,056,422	+		GFF5059	0.47	+1.0
5,056,422	+		GFF5059	0.47	+0.0
5,056,423	-		GFF5059	0.47	-0.8
5,056,430	-		GFF5059	0.47	+0.3
5,056,430	-		GFF5059	0.47	-1.8
5,056,430	-		GFF5059	0.47	-1.8
5,056,430	-		GFF5059	0.47	+1.2
5,056,432	+		GFF5059	0.47	-0.5
5,056,432	+		GFF5059	0.47	-1.0
5,056,432	+		GFF5059	0.47	+1.7
5,056,432	+		GFF5059	0.47	+2.0
5,056,432	+		GFF5059	0.47	+0.6
5,056,440	-		GFF5059	0.48	+0.4
5,056,440	-		GFF5059	0.48	+0.0
5,056,440	-		GFF5059	0.48	-0.5
5,056,440	-		GFF5059	0.48	+0.0
5,056,440	-		GFF5059	0.48	-0.9
5,056,440	-		GFF5059	0.48	-0.5
5,056,440	-		GFF5059	0.48	+0.5
5,056,450	-		GFF5059	0.49	-0.7
5,056,455	+		GFF5059	0.49	-1.0
5,056,455	+		GFF5059	0.49	-0.1
5,056,456	-		GFF5059	0.49	-0.3
5,056,463	-		GFF5059	0.50	+0.7
5,056,463	-		GFF5059	0.50	-0.8
5,056,494	-		GFF5059	0.53	+0.1
5,056,511	+		GFF5059	0.54	+0.4
5,056,511	+		GFF5059	0.54	+0.5
5,056,535	+		GFF5059	0.56	+0.1
5,056,617	+		GFF5059	0.63	-0.7
5,056,627	-		GFF5059	0.64	-0.8
5,056,629	+		GFF5059	0.64	+0.4
5,056,661	+		GFF5059	0.67	-0.3
5,056,712	+		GFF5059	0.71	+0.3
5,056,753	+		GFF5059	0.74	+0.0
5,056,753	+		GFF5059	0.74	-0.8
5,056,761	+		GFF5059	0.75	+0.5
5,056,761	-		GFF5059	0.75	-1.7
5,056,767	-		GFF5059	0.75	+0.8
5,056,793	-		GFF5059	0.77	-1.8
5,056,825	+		GFF5059	0.80	-0.2
5,056,825	+		GFF5059	0.80	+0.2
5,056,833	-		GFF5059	0.81	-0.2
5,056,837	-		GFF5059	0.81	+1.4
5,056,837	-		GFF5059	0.81	+0.5
5,056,858	+		GFF5059	0.83	+1.5
5,056,863	+		GFF5059	0.83	-1.8
5,056,877	+		GFF5059	0.84	+0.6
5,056,877	+		GFF5059	0.84	+0.8
5,056,877	+		GFF5059	0.84	+0.0
5,056,877	+		GFF5059	0.84	+0.1
5,056,880	-		GFF5059	0.85	+0.2
5,056,907	+		GFF5059	0.87	-2.5
5,056,911	+		GFF5059	0.87	-2.4
5,056,963	-				+1.8
5,056,963	-				+0.8
5,056,973	+				-1.7
5,056,973	+				+0.6
5,056,981	+				-0.1
5,056,989	-				-1.4
5,057,007	-				+1.3
5,057,022	+				-1.0
5,057,022	+				-1.1
5,057,037	+				-0.8
5,057,068	+				+0.3
5,057,068	+				+1.8
5,057,068	+				-0.1
5,057,068	+				-0.4
5,057,068	+				+0.6
5,057,068	+				+0.4
5,057,068	+				+0.8
5,057,076	-				+1.3
5,057,076	-				-0.2
5,057,076	-				+0.4
5,057,076	-				-0.6
5,057,076	-				-0.4
5,057,076	-				-0.0
5,057,076	-				+0.7
5,057,076	-				+0.5
5,057,091	-				-0.2
5,057,130	-				-0.1
5,057,136	+				+0.3
5,057,136	+				+0.6
5,057,136	+				+0.2
5,057,196	-				-0.0
5,057,214	+				-1.6
5,057,219	+				-1.4
5,057,222	-				+1.1
5,057,222	-				+0.6
5,057,222	-				-0.2
5,057,234	+				+0.3
5,057,242	-				+0.9
5,057,253	+				-1.1
5,057,255	-				-0.3
5,057,261	-				+0.5
5,057,261	-				+0.8
5,057,261	-				+1.0
5,057,267	-				-0.2
5,057,268	-				+0.3
5,057,288	-				-0.6
5,057,293	+				+0.8
5,057,293	+				-0.0
5,057,301	-				-0.7
5,057,301	-				+0.3
5,057,312	+				-1.3
5,057,312	+				+0.9
5,057,315	+				-0.1
5,057,315	+				+0.5
5,057,315	+				+0.6
5,057,315	+				-0.5
5,057,315	+				-0.1
5,057,317	+				+1.1
5,057,320	-				-0.8
5,057,323	-				-0.2
5,057,323	-				-1.7
5,057,323	-				-0.6
5,057,323	-				+1.0
5,057,323	-				+0.4
5,057,323	-				+0.3
5,057,323	-				-0.0
5,057,325	-				+1.0
5,057,349	+				+0.8
5,057,446	+		GFF5060	0.13	-0.9
5,057,453	+		GFF5060	0.15	-0.3
5,057,455	-		GFF5060	0.15	+0.1
5,057,481	+		GFF5060	0.20	-1.0
5,057,481	+		GFF5060	0.20	-0.1
5,057,481	+		GFF5060	0.20	+0.4
5,057,481	+		GFF5060	0.20	-0.6
5,057,481	+		GFF5060	0.20	-0.4
5,057,489	-		GFF5060	0.22	-0.0
5,057,524	+		GFF5060	0.29	+0.3
5,057,560	+		GFF5060	0.37	-2.5
5,057,570	-		GFF5060	0.39	+0.0
5,057,571	-		GFF5060	0.39	-2.2
5,057,573	+		GFF5060	0.40	-2.4
5,057,580	+		GFF5060	0.41	+0.8
5,057,581	-		GFF5060	0.41	-1.6
5,057,583	+		GFF5060	0.42	-2.4
5,057,585	+		GFF5060	0.42	+1.0
5,057,590	+		GFF5060	0.43	-0.1
5,057,611	+		GFF5060	0.47	-0.2
5,057,619	-		GFF5060	0.49	+0.5
5,057,628	+		GFF5060	0.51	+1.2
5,057,634	+		GFF5060	0.52	+0.1
5,057,634	+		GFF5060	0.52	+0.7
5,057,634	+		GFF5060	0.52	+0.4
5,057,634	+		GFF5060	0.52	+0.1
5,057,639	+		GFF5060	0.53	+1.1
5,057,640	+		GFF5060	0.54	+0.5
5,057,642	-		GFF5060	0.54	+0.5
5,057,642	-		GFF5060	0.54	-0.5
5,057,642	-		GFF5060	0.54	+1.1
5,057,647	-		GFF5060	0.55	-0.0
5,057,647	-		GFF5060	0.55	+0.0
5,057,653	+		GFF5060	0.56	+2.1
5,057,655	+		GFF5060	0.57	-0.6
5,057,663	-		GFF5060	0.58	-0.6
5,057,666	+		GFF5060	0.59	+1.9
5,057,678	+		GFF5060	0.61	-0.1
5,057,708	-		GFF5060	0.68	+0.1
5,057,737	-		GFF5060	0.74	+0.6
5,057,749	+		GFF5060	0.76	-0.3
5,057,795	+		GFF5060	0.86	-0.3
5,057,795	+		GFF5060	0.86	-0.4
5,057,795	+		GFF5060	0.86	+0.6
5,057,795	+		GFF5060	0.86	+1.6
5,057,845	+				-0.0
5,057,845	+				-1.7
5,057,845	+				+1.4
5,057,853	-				-0.6
5,057,853	-				+0.8
5,057,853	-				+0.6
5,057,853	-				+0.4
5,057,853	-				+1.0
5,057,853	-				+0.6
5,057,853	-				+0.4
5,057,853	-				+1.9
5,057,853	-				-1.3
5,057,853	-				+0.7
5,057,853	-				-1.6
5,057,863	+				-0.9
5,057,894	+		GFF5061	0.14	+0.0
5,057,929	+		GFF5061	0.27	+1.1
5,057,941	+		GFF5061	0.31	+0.4
5,057,949	-		GFF5061	0.34	-1.2
5,057,972	-		GFF5061	0.42	+0.0
5,057,989	+		GFF5061	0.49	-1.4
5,057,994	+		GFF5061	0.50	-0.4
5,058,024	+		GFF5061	0.61	+0.0
5,058,024	+		GFF5061	0.61	-1.8
5,058,024	+		GFF5061	0.61	+0.4
5,058,032	-		GFF5061	0.64	-1.7
5,058,032	-		GFF5061	0.64	+0.2
5,058,032	-		GFF5061	0.64	-2.1
5,058,036	-		GFF5061	0.66	+0.5
5,058,117	+				+0.0
5,058,132	-				-1.1
5,058,132	-				-0.7
5,058,166	+				-1.0
5,058,174	+				-1.4
5,058,188	+				+0.2
5,058,196	-				-1.4
5,058,196	-				-0.8
5,058,196	-				-2.0
5,058,201	-				+1.2
5,058,203	-				+0.3
5,058,213	-				+0.8
5,058,213	-				+0.6
5,058,213	-				+1.2
5,058,213	-				-0.4
5,058,239	+				+0.5
5,058,239	+				+0.7
5,058,241	+				+0.5
5,058,272	-				-1.2
5,058,320	+		GFF5062	0.12	-0.9
5,058,321	-		GFF5062	0.12	+0.2
5,058,330	+		GFF5062	0.13	+0.6
5,058,359	+		GFF5062	0.16	-0.6
5,058,359	+		GFF5062	0.16	-0.6
5,058,359	+		GFF5062	0.16	+2.0
5,058,359	+		GFF5062	0.16	-0.7
5,058,367	-		GFF5062	0.16	+0.9
5,058,410	+		GFF5062	0.20	-1.3
5,058,430	-		GFF5062	0.21	-1.3
5,058,470	-		GFF5062	0.25	-1.8
5,058,479	-		GFF5062	0.25	-0.5
5,058,479	-		GFF5062	0.25	+1.1
5,058,481	-		GFF5062	0.26	+0.0
5,058,484	+		GFF5062	0.26	-1.6
5,058,484	+		GFF5062	0.26	+0.1
5,058,503	+		GFF5062	0.27	-0.2
5,058,503	+		GFF5062	0.27	+0.5
5,058,503	+		GFF5062	0.27	+0.4
5,058,503	+		GFF5062	0.27	+1.6
5,058,503	+		GFF5062	0.27	-2.0
5,058,503	+		GFF5062	0.27	+0.9
5,058,503	+		GFF5062	0.27	-0.9
5,058,511	-		GFF5062	0.28	-2.8
5,058,511	-		GFF5062	0.28	-0.0
5,058,511	-		GFF5062	0.28	+0.3
5,058,511	-		GFF5062	0.28	-0.4
5,058,511	-		GFF5062	0.28	+0.0
5,058,511	-		GFF5062	0.28	+0.4
5,058,511	-		GFF5062	0.28	-0.2
5,058,513	-		GFF5062	0.28	-0.6
5,058,539	+		GFF5062	0.30	-0.3
5,058,539	+		GFF5062	0.30	+0.1
5,058,547	-		GFF5062	0.31	-0.7
5,058,547	-		GFF5062	0.31	-0.2
5,058,551	+		GFF5062	0.31	-1.3
5,058,559	-		GFF5062	0.32	-1.1
5,058,559	-		GFF5062	0.32	-0.1
5,058,559	-		GFF5062	0.32	+0.9
5,058,560	+		GFF5062	0.32	+1.1
5,058,562	-		GFF5062	0.32	+0.0
5,058,590	-		GFF5062	0.35	+0.5
5,058,595	+		GFF5062	0.35	-0.0
5,058,595	+		GFF5062	0.35	+1.5
5,058,595	+		GFF5062	0.35	-1.6
5,058,595	+		GFF5062	0.35	+0.6
5,058,600	+		GFF5062	0.35	-1.3
5,058,600	+		GFF5062	0.35	-0.5
5,058,600	+		GFF5062	0.35	+0.4
5,058,603	-		GFF5062	0.36	-1.1
5,058,603	-		GFF5062	0.36	-0.3
5,058,603	-		GFF5062	0.36	-0.0
5,058,605	+		GFF5062	0.36	+1.8
5,058,605	+		GFF5062	0.36	+0.4
5,058,605	+		GFF5062	0.36	-0.4
5,058,605	+		GFF5062	0.36	-0.1
5,058,605	+		GFF5062	0.36	+1.1
5,058,608	-		GFF5062	0.36	-1.3
5,058,608	-		GFF5062	0.36	+0.0
5,058,608	-		GFF5062	0.36	-1.1
5,058,608	-		GFF5062	0.36	+0.8
5,058,608	-		GFF5062	0.36	-0.8
5,058,608	-		GFF5062	0.36	-1.6
5,058,613	-		GFF5062	0.37	+1.0
5,058,613	-		GFF5062	0.37	+1.0
5,058,613	-		GFF5062	0.37	+0.1
5,058,613	-		GFF5062	0.37	-0.7
5,058,613	-		GFF5062	0.37	+0.2
5,058,613	-		GFF5062	0.37	-0.2
5,058,613	-		GFF5062	0.37	+0.5
5,058,613	-		GFF5062	0.37	-0.2
5,058,627	+		GFF5062	0.38	-0.2
5,058,668	+		GFF5062	0.41	+0.4
5,058,688	+		GFF5062	0.43	-0.7
5,058,695	+		GFF5062	0.43	-0.1
5,058,695	+		GFF5062	0.43	+0.2
5,058,700	+		GFF5062	0.44	-0.7
5,058,712	+		GFF5062	0.45	+0.8
5,058,715	-		GFF5062	0.45	-0.7
5,058,728	-		GFF5062	0.46	+0.7
5,058,730	+		GFF5062	0.46	+0.6
5,058,730	+		GFF5062	0.46	-1.8
5,058,730	+		GFF5062	0.46	-0.4
5,058,730	+		GFF5062	0.46	+1.6
5,058,730	+		GFF5062	0.46	+1.0
5,058,730	+		GFF5062	0.46	-0.5
5,058,730	+		GFF5062	0.46	+0.5
5,058,730	+		GFF5062	0.46	+0.8
5,058,738	-		GFF5062	0.47	+0.5
5,058,738	-		GFF5062	0.47	-0.9
5,058,738	-		GFF5062	0.47	-0.2
5,058,738	-		GFF5062	0.47	+0.4
5,058,738	-		GFF5062	0.47	-1.0
5,058,738	-		GFF5062	0.47	+0.6
5,058,738	-		GFF5062	0.47	-0.2
5,058,738	-		GFF5062	0.47	+0.3
5,058,741	+		GFF5062	0.47	-0.1
5,058,743	-		GFF5062	0.47	-0.7
5,058,759	+		GFF5062	0.49	-0.8
5,058,812	+		GFF5062	0.53	-0.3
5,058,812	+		GFF5062	0.53	-1.5
5,058,820	-		GFF5062	0.54	-2.6
5,058,841	+		GFF5062	0.55	+1.1
5,058,846	+		GFF5062	0.56	+0.8
5,058,846	+		GFF5062	0.56	+0.8
5,058,846	+		GFF5062	0.56	+1.1
5,058,846	+		GFF5062	0.56	-0.3
5,058,846	+		GFF5062	0.56	-0.2
5,058,854	-		GFF5062	0.56	-0.5
5,058,854	-		GFF5062	0.56	-0.2
5,058,854	-		GFF5062	0.56	+0.2
5,058,854	-		GFF5062	0.56	+0.5
5,058,861	+		GFF5062	0.57	-1.0
5,058,861	+		GFF5062	0.57	+0.9