Strain Fitness in Sphingobium sp. HT1-2 around GFF5043

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,040,107	+		GFF5041	0.86	-0.5
5,040,109	-		GFF5041	0.86	-0.7
5,040,116	+		GFF5041	0.87	-1.7
5,040,116	+		GFF5041	0.87	-2.1
5,040,116	+		GFF5041	0.87	-1.2
5,040,117	+		GFF5041	0.87	-0.0
5,040,124	-		GFF5041	0.87	-0.0
5,040,124	-		GFF5041	0.87	-0.5
5,040,124	-		GFF5041	0.87	-0.2
5,040,124	-		GFF5041	0.87	-0.2
5,040,124	-		GFF5041	0.87	-1.0
5,040,124	-		GFF5041	0.87	-1.3
5,040,129	+		GFF5041	0.88	+0.7
5,040,139	+		GFF5041	0.89	-0.2
5,040,142	+		GFF5041	0.89	-0.3
5,040,147	+		GFF5041	0.90	+0.7
5,040,150	-				+0.3
5,040,152	-				-0.1
5,040,253	-				-0.4
5,040,288	-				-1.8
5,040,453	+		GFF5042	0.23	+0.1
5,040,456	-		GFF5042	0.24	-1.3
5,040,462	-		GFF5042	0.26	-1.2
5,040,499	+		GFF5042	0.39	+0.7
5,040,504	+		GFF5042	0.41	+1.2
5,040,504	+		GFF5042	0.41	-0.6
5,040,504	+		GFF5042	0.41	-0.9
5,040,537	-		GFF5042	0.52	+0.6
5,040,539	+		GFF5042	0.53	-1.2
5,040,547	-		GFF5042	0.56	-0.7
5,040,548	+		GFF5042	0.56	-0.9
5,040,556	-		GFF5042	0.59	+1.0
5,040,559	+		GFF5042	0.60	+0.0
5,040,559	+		GFF5042	0.60	-0.2
5,040,559	+		GFF5042	0.60	-0.7
5,040,559	+		GFF5042	0.60	-0.6
5,040,567	-		GFF5042	0.62	-0.5
5,040,569	+		GFF5042	0.63	-2.0
5,040,577	-		GFF5042	0.66	-1.2
5,040,577	-		GFF5042	0.66	-1.3
5,040,577	-		GFF5042	0.66	-0.7
5,040,581	+		GFF5042	0.67	+0.1
5,040,581	+		GFF5042	0.67	-0.7
5,040,581	+		GFF5042	0.67	-1.3
5,040,581	+		GFF5042	0.67	-0.3
5,040,581	+		GFF5042	0.67	+1.5
5,040,581	+		GFF5042	0.67	-1.2
5,040,581	+		GFF5042	0.67	-2.3
5,040,581	+		GFF5042	0.67	-0.3
5,040,581	+		GFF5042	0.67	-0.9
5,040,586	+		GFF5042	0.69	-1.5
5,040,589	-		GFF5042	0.70	-0.7
5,040,589	-		GFF5042	0.70	-1.0
5,040,589	-		GFF5042	0.70	+0.5
5,040,589	-		GFF5042	0.70	-0.0
5,040,589	-		GFF5042	0.70	-0.2
5,040,589	-		GFF5042	0.70	-2.3
5,040,589	-		GFF5042	0.70	-0.7
5,040,589	-		GFF5042	0.70	-0.7
5,040,589	-		GFF5042	0.70	+0.6
5,040,589	-		GFF5042	0.70	-0.7
5,040,591	+		GFF5042	0.71	-1.4
5,040,591	+		GFF5042	0.71	-0.3
5,040,591	+		GFF5042	0.71	-0.2
5,040,591	+		GFF5042	0.71	-3.3
5,040,591	+		GFF5042	0.71	+0.1
5,040,591	+		GFF5042	0.71	-1.1
5,040,591	+		GFF5042	0.71	-0.7
5,040,604	+		GFF5042	0.75	-1.3
5,040,636	+		GFF5042	0.86	+0.3
5,040,653	+				-0.1
5,040,659	+				-2.3
5,040,659	+				-0.0
5,040,660	+				-0.8
5,040,661	-				-0.9
5,040,667	-				-0.9
5,040,667	-				-1.1
5,040,672	+				-0.2
5,040,695	-				+1.6
5,040,700	+				-0.7
5,040,705	+				-0.9
5,040,708	+				-1.3
5,040,722	+				-0.2
5,040,736	-				+0.5
5,040,738	+				-2.9
5,040,738	+				+0.4
5,040,746	-				-1.6
5,040,746	-				-1.1
5,040,746	-				-1.3
5,040,746	-				-0.2
5,040,779	-				-1.0
5,040,783	+				-0.3
5,040,792	-				+0.5
5,040,797	-				-0.5
5,040,807	-				-0.4
5,040,840	+				-1.3
5,040,840	+				-1.8
5,040,840	+				-1.3
5,040,840	+				+0.5
5,040,840	+				-2.3
5,040,840	+				+1.1
5,040,840	+				-0.1
5,040,840	+				-1.9
5,040,840	+				-1.5
5,040,840	+				-1.8
5,040,840	+				+0.5
5,040,840	+				+0.7
5,040,846	+				-0.3
5,040,847	-				+0.7
5,040,848	-				-1.3
5,040,848	-				+0.3
5,040,848	-				+0.2
5,040,848	-				-1.0
5,040,848	-				-1.4
5,040,848	-				+0.2
5,040,848	-				-1.3
5,040,848	-				-2.2
5,040,848	-				-2.2
5,040,848	-				+0.1
5,040,848	-				-0.5
5,040,848	-				-0.5
5,040,848	-				+0.3
5,040,848	-				-1.3
5,040,848	-				-0.3
5,040,871	-				+0.4
5,040,876	+				+0.8
5,040,876	+				-0.8
5,040,876	+				-0.2
5,040,876	+				-1.5
5,040,879	+				+0.8
5,040,879	+				-0.6
5,040,879	+				-1.2
5,040,881	+				-1.5
5,040,884	-				-1.9
5,040,884	-				+0.1
5,040,887	-				-1.8
5,040,899	-				+1.1
5,040,941	+				-1.7
5,040,942	+				-0.3
5,040,950	-				-0.0
5,040,979	+				-0.9
5,040,984	-				+0.3
5,040,984	-				-0.2
5,040,987	-				+0.0
5,041,005	+				+0.1
5,041,021	-				-1.3
5,041,031	-				-0.1
5,041,066	-				+0.5
5,041,092	+				-0.8
5,041,110	-		GFF5043	0.17	-0.8
5,041,155	+		GFF5043	0.52	-0.4
5,041,163	-		GFF5043	0.58	+0.5
5,041,168	-		GFF5043	0.62	-2.7
5,041,174	+		GFF5043	0.67	-0.6
5,041,174	+		GFF5043	0.67	-0.0
5,041,174	-		GFF5043	0.67	-1.3
5,041,174	-		GFF5043	0.67	+1.2
5,041,178	-		GFF5043	0.70	-2.8
5,041,182	-		GFF5043	0.73	-1.3
5,041,229	-				-1.2
5,041,240	+				-0.7
5,041,240	+				+0.4
5,041,248	+				-0.3
5,041,248	-				-0.1
5,041,248	-				-0.2
5,041,248	-				-0.5
5,041,250	-				+0.5
5,041,250	-				-0.8
5,041,256	-				-1.3
5,041,287	+				+0.8
5,041,305	-				+0.5
5,041,338	-				-1.0
5,041,340	+				-0.3
5,041,340	+				-0.9
5,041,340	+				+1.5
5,041,348	-				+0.4
5,041,348	-				+0.8
5,041,348	-				+0.2
5,041,348	-				-2.4
5,041,363	+				-0.5
5,041,384	-				+1.1
5,041,421	+				+0.9
5,041,421	-				+0.5
5,041,422	+				+0.8
5,041,422	+				-0.1
5,041,441	+				-0.7
5,041,447	+				-0.1
5,041,447	+				+0.6
5,041,455	-				-0.7
5,041,458	+				-1.0
5,041,461	+				-2.2
5,041,478	+				-0.7
5,041,484	-				-2.0
5,041,492	-				-0.1
5,041,511	+				-2.7
5,041,514	-				-1.6
5,041,518	-				-1.5
5,041,540	-				-0.3
5,041,542	+				+0.4
5,041,550	-				-1.8
5,041,552	+				-0.5
5,041,560	+		GFF5044	0.10	+0.0
5,041,584	+		GFF5044	0.14	-2.5
5,041,589	+		GFF5044	0.15	+0.5
5,041,594	+		GFF5044	0.15	-2.2
5,041,597	-		GFF5044	0.16	-0.7
5,041,597	-		GFF5044	0.16	-0.9
5,041,604	+		GFF5044	0.17	-1.8
5,041,642	-		GFF5044	0.23	+1.1
5,041,655	+		GFF5044	0.25	-0.2
5,041,668	+		GFF5044	0.27	-0.0
5,041,668	+		GFF5044	0.27	+1.3
5,041,668	+		GFF5044	0.27	-0.4
5,041,668	+		GFF5044	0.27	-2.1
5,041,668	+		GFF5044	0.27	-1.0
5,041,668	+		GFF5044	0.27	-0.6
5,041,668	+		GFF5044	0.27	-1.1
5,041,668	+		GFF5044	0.27	+0.4
5,041,668	+		GFF5044	0.27	-0.8
5,041,668	+		GFF5044	0.27	-0.0
5,041,668	+		GFF5044	0.27	+0.2
5,041,676	-		GFF5044	0.28	+0.7
5,041,676	-		GFF5044	0.28	+0.3
5,041,698	-		GFF5044	0.31	-1.7
5,041,749	-		GFF5044	0.39	-1.8
5,041,768	+		GFF5044	0.42	+0.0
5,041,775	-		GFF5044	0.43	+0.4
5,041,775	-		GFF5044	0.43	+1.3
5,041,790	-		GFF5044	0.45	-0.4
5,041,810	-		GFF5044	0.48	-0.9
5,041,816	-		GFF5044	0.49	-1.3
5,041,850	-		GFF5044	0.54	+0.8
5,041,850	-		GFF5044	0.54	-0.8
5,041,855	-		GFF5044	0.55	-0.9
5,041,857	+		GFF5044	0.56	+1.4
5,041,857	+		GFF5044	0.56	-0.6
5,041,857	+		GFF5044	0.56	+0.7
5,041,857	+		GFF5044	0.56	-0.1
5,041,857	+		GFF5044	0.56	-1.9
5,041,865	-		GFF5044	0.57	-0.1
5,041,865	-		GFF5044	0.57	-0.1
5,041,865	-		GFF5044	0.57	-1.8
5,041,869	-		GFF5044	0.57	-1.8
5,041,891	-		GFF5044	0.61	+0.7
5,041,920	+		GFF5044	0.65	-0.9
5,041,940	+		GFF5044	0.68	-0.1
5,041,940	+		GFF5044	0.68	-0.3
5,041,940	+		GFF5044	0.68	+0.2
5,041,944	-		GFF5044	0.69	+0.3
5,041,947	+		GFF5044	0.69	-2.2
5,041,948	-		GFF5044	0.69	-0.8
5,041,948	-		GFF5044	0.69	-1.0
5,041,948	-		GFF5044	0.69	-1.0
5,041,948	-		GFF5044	0.69	-0.7
5,041,948	-		GFF5044	0.69	-0.7
5,041,964	+		GFF5044	0.72	+0.9
5,041,972	+		GFF5044	0.73	+0.9
5,041,976	+		GFF5044	0.74	-2.4
5,041,982	+		GFF5044	0.75	-0.1
5,041,990	-		GFF5044	0.76	-1.4
5,041,995	+		GFF5044	0.77	-0.2
5,042,000	+		GFF5044	0.77	+0.2
5,042,008	+		GFF5044	0.79	-0.5
5,042,008	+		GFF5044	0.79	+0.3
5,042,008	+		GFF5044	0.79	+0.6
5,042,008	+		GFF5044	0.79	-0.1
5,042,008	+		GFF5044	0.79	-1.1
5,042,008	+		GFF5044	0.79	-0.7
5,042,008	+		GFF5044	0.79	-0.2
5,042,008	-		GFF5044	0.79	+0.3
5,042,008	-		GFF5044	0.79	-0.8
5,042,008	-		GFF5044	0.79	-0.0
5,042,008	-		GFF5044	0.79	-2.0
5,042,008	-		GFF5044	0.79	+0.3
5,042,008	-		GFF5044	0.79	+0.6
5,042,016	-		GFF5044	0.80	-0.6
5,042,016	-		GFF5044	0.80	+0.8
5,042,016	-		GFF5044	0.80	-0.7
5,042,016	-		GFF5044	0.80	+0.8
5,042,016	-		GFF5044	0.80	-1.7
5,042,041	-		GFF5044	0.84	-0.9
5,042,097	+				-0.9
5,042,106	-				-0.1
5,042,118	-				-0.7
5,042,118	-				-1.1
5,042,125	+				-2.7
5,042,164	+				-0.4
5,042,209	+				-1.8
5,042,212	-				-1.9