Strain Fitness in Sphingobium sp. HT1-2 around GFF5027

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,018,351	+		GFF5026	0.59	-0.4
5,018,362	+		GFF5026	0.60	-0.2
5,018,393	+		GFF5026	0.62	-1.2
5,018,450	-		GFF5026	0.66	-1.3
5,018,452	+		GFF5026	0.66	-1.5
5,018,452	+		GFF5026	0.66	-1.1
5,018,455	-		GFF5026	0.66	+0.8
5,018,461	+		GFF5026	0.66	-1.1
5,018,467	+		GFF5026	0.67	+0.1
5,018,467	-		GFF5026	0.67	+0.9
5,018,474	+		GFF5026	0.67	-1.4
5,018,475	-		GFF5026	0.67	+0.4
5,018,476	-		GFF5026	0.67	-0.1
5,018,476	-		GFF5026	0.67	-0.8
5,018,485	+		GFF5026	0.68	+0.2
5,018,485	+		GFF5026	0.68	-1.0
5,018,485	+		GFF5026	0.68	-0.9
5,018,485	+		GFF5026	0.68	-0.4
5,018,485	+		GFF5026	0.68	-0.3
5,018,485	+		GFF5026	0.68	+0.9
5,018,485	+		GFF5026	0.68	-0.6
5,018,485	+		GFF5026	0.68	-0.8
5,018,485	+		GFF5026	0.68	-0.8
5,018,485	+		GFF5026	0.68	+0.4
5,018,485	+		GFF5026	0.68	-0.5
5,018,485	+		GFF5026	0.68	+0.1
5,018,486	+		GFF5026	0.68	-1.9
5,018,491	-		GFF5026	0.68	-0.1
5,018,491	-		GFF5026	0.68	-1.3
5,018,493	+		GFF5026	0.68	-1.4
5,018,493	-		GFF5026	0.68	+0.8
5,018,493	-		GFF5026	0.68	-2.0
5,018,493	-		GFF5026	0.68	+1.5
5,018,493	-		GFF5026	0.68	-0.1
5,018,493	-		GFF5026	0.68	+0.4
5,018,493	-		GFF5026	0.68	+0.4
5,018,495	+		GFF5026	0.68	-0.9
5,018,495	+		GFF5026	0.68	-1.6
5,018,495	+		GFF5026	0.68	+0.0
5,018,501	-		GFF5026	0.69	-1.0
5,018,501	-		GFF5026	0.69	-0.3
5,018,503	-		GFF5026	0.69	+0.4
5,018,503	-		GFF5026	0.69	+0.5
5,018,503	-		GFF5026	0.69	-0.6
5,018,503	-		GFF5026	0.69	-0.0
5,018,503	-		GFF5026	0.69	+1.5
5,018,503	-		GFF5026	0.69	+0.4
5,018,503	-		GFF5026	0.69	+0.3
5,018,503	-		GFF5026	0.69	+0.6
5,018,503	-		GFF5026	0.69	-0.9
5,018,503	-		GFF5026	0.69	-0.3
5,018,503	-		GFF5026	0.69	+1.1
5,018,503	-		GFF5026	0.69	-0.5
5,018,510	+		GFF5026	0.69	-1.4
5,018,510	+		GFF5026	0.69	-2.0
5,018,510	+		GFF5026	0.69	+0.4
5,018,510	+		GFF5026	0.69	-0.1
5,018,510	+		GFF5026	0.69	-1.3
5,018,510	+		GFF5026	0.69	-0.1
5,018,510	+		GFF5026	0.69	-0.6
5,018,518	-		GFF5026	0.70	-0.1
5,018,518	-		GFF5026	0.70	-0.3
5,018,518	-		GFF5026	0.70	+0.2
5,018,534	+		GFF5026	0.71	+0.3
5,018,550	-		GFF5026	0.72	-0.1
5,018,586	+		GFF5026	0.74	-1.6
5,018,586	+		GFF5026	0.74	-0.6
5,018,586	+		GFF5026	0.74	-0.6
5,018,586	+		GFF5026	0.74	-1.9
5,018,594	-		GFF5026	0.74	+1.1
5,018,594	-		GFF5026	0.74	+1.4
5,018,594	-		GFF5026	0.74	-0.7
5,018,596	-		GFF5026	0.75	+0.2
5,018,597	+		GFF5026	0.75	-1.5
5,018,605	-		GFF5026	0.75	-1.3
5,018,616	+		GFF5026	0.76	-0.2
5,018,616	+		GFF5026	0.76	+0.7
5,018,616	+		GFF5026	0.76	-0.1
5,018,616	+		GFF5026	0.76	+0.0
5,018,621	+		GFF5026	0.76	+1.4
5,018,624	-		GFF5026	0.76	-0.2
5,018,624	-		GFF5026	0.76	-2.8
5,018,624	-		GFF5026	0.76	+1.2
5,018,624	-		GFF5026	0.76	-0.6
5,018,624	-		GFF5026	0.76	+0.7
5,018,628	+		GFF5026	0.77	+1.3
5,018,634	-		GFF5026	0.77	-0.2
5,018,634	-		GFF5026	0.77	-0.9
5,018,659	-		GFF5026	0.79	-1.2
5,018,660	+		GFF5026	0.79	+0.2
5,018,660	+		GFF5026	0.79	-0.0
5,018,660	+		GFF5026	0.79	-0.4
5,018,661	+		GFF5026	0.79	-0.2
5,018,661	+		GFF5026	0.79	+0.1
5,018,668	-		GFF5026	0.79	+1.6
5,018,668	-		GFF5026	0.79	-0.1
5,018,669	-		GFF5026	0.79	-1.4
5,018,676	+		GFF5026	0.80	-0.4
5,018,683	+		GFF5026	0.80	+0.0
5,018,693	+		GFF5026	0.81	+0.1
5,018,694	-		GFF5026	0.81	+1.0
5,018,707	+		GFF5026	0.82	-0.5
5,018,710	-		GFF5026	0.82	+0.8
5,018,710	-		GFF5026	0.82	-0.5
5,018,724	+		GFF5026	0.83	+0.6
5,018,732	-		GFF5026	0.83	-0.4
5,018,733	+		GFF5026	0.83	+0.3
5,018,733	+		GFF5026	0.83	-2.1
5,018,736	-		GFF5026	0.83	-0.9
5,018,741	-		GFF5026	0.84	+0.3
5,018,741	-		GFF5026	0.84	+0.5
5,018,741	-		GFF5026	0.84	+0.2
5,018,741	-		GFF5026	0.84	+0.7
5,018,741	-		GFF5026	0.84	+1.0
5,018,741	-		GFF5026	0.84	+1.0
5,018,762	-		GFF5026	0.85	+0.4
5,018,767	-		GFF5026	0.85	+0.9
5,018,771	-		GFF5026	0.85	+0.4
5,018,805	+		GFF5026	0.88	-1.6
5,018,813	-		GFF5026	0.88	-2.4
5,018,848	+				+0.7
5,018,856	-				+1.2
5,018,880	-				+0.9
5,018,914	+				+1.0
5,018,922	-				-1.1
5,018,934	+				+1.1
5,018,934	+				-0.3
5,018,992	+				+0.2
5,019,009	-				+0.6
5,019,015	-				+0.3
5,019,058	+				+0.1
5,019,058	+				-1.1
5,019,066	-				+1.5
5,019,066	-				-0.8
5,019,097	+				+0.7
5,019,097	+				-0.2
5,019,097	+				-0.2
5,019,103	+				+1.3
5,019,121	-				+1.6
5,019,152	+				+0.0
5,019,160	-				+0.7
5,019,162	+				-2.3
5,019,162	+				-1.9
5,019,169	+				-0.9
5,019,170	-				-0.5
5,019,171	+				-0.9
5,019,171	+				+0.0
5,019,171	+				+1.4
5,019,179	-				-0.8
5,019,179	-				-1.4
5,019,179	-				+1.3
5,019,179	-				-0.3
5,019,179	-				-0.3
5,019,179	-				-0.6
5,019,184	-				+0.4
5,019,186	+				+0.7
5,019,194	-				+1.4
5,019,194	-				+0.1
5,019,256	+				-1.8
5,019,257	+				-0.2
5,019,265	-				+0.8
5,019,265	-				+0.5
5,019,310	-				-0.4
5,019,335	+				-0.6
5,019,343	-				-0.7
5,019,348	+				-0.6
5,019,348	+				+0.2
5,019,348	+				+0.1
5,019,351	-				-0.4
5,019,356	-				+0.8
5,019,356	-				+0.6
5,019,358	+				-1.4
5,019,359	+				-0.6
5,019,386	-				+0.5
5,019,396	+				-0.4
5,019,424	-				-0.2
5,019,424	-				-0.4
5,019,439	+		GFF5027	0.10	+0.1
5,019,455	+		GFF5027	0.12	-0.6
5,019,475	-		GFF5027	0.14	+0.5
5,019,501	+		GFF5027	0.16	-0.6
5,019,506	+		GFF5027	0.17	+0.7
5,019,514	-		GFF5027	0.18	+0.2
5,019,534	+		GFF5027	0.20	+0.8
5,019,534	+		GFF5027	0.20	-0.3
5,019,542	-		GFF5027	0.21	+0.1
5,019,547	-		GFF5027	0.21	+0.2
5,019,576	+		GFF5027	0.24	-0.6
5,019,579	-		GFF5027	0.24	+0.6
5,019,584	-		GFF5027	0.25	+0.4
5,019,586	-		GFF5027	0.25	-0.5
5,019,589	+		GFF5027	0.25	+0.5
5,019,597	-		GFF5027	0.26	+0.1
5,019,597	-		GFF5027	0.26	+1.3
5,019,611	+		GFF5027	0.28	+1.2
5,019,619	-		GFF5027	0.28	-0.2
5,019,724	+		GFF5027	0.39	+0.3
5,019,732	-		GFF5027	0.40	+1.5
5,019,732	-		GFF5027	0.40	-0.3
5,019,732	-		GFF5027	0.40	+1.2
5,019,732	-		GFF5027	0.40	-0.5
5,019,732	-		GFF5027	0.40	-0.4
5,019,732	-		GFF5027	0.40	-0.5
5,019,735	+		GFF5027	0.40	+0.8
5,019,738	+		GFF5027	0.40	+0.9
5,019,746	-		GFF5027	0.41	+1.3
5,019,746	-		GFF5027	0.41	-2.4
5,019,786	-		GFF5027	0.45	+0.3
5,019,838	+		GFF5027	0.50	-0.1
5,019,850	+		GFF5027	0.52	+0.8
5,019,859	+		GFF5027	0.52	-1.6
5,019,859	+		GFF5027	0.52	+0.2
5,019,859	+		GFF5027	0.52	+0.7
5,019,859	+		GFF5027	0.52	+0.8
5,019,867	-		GFF5027	0.53	-0.2
5,019,877	-		GFF5027	0.54	-1.1
5,019,886	+		GFF5027	0.55	-1.2
5,019,886	+		GFF5027	0.55	-0.6
5,019,886	+		GFF5027	0.55	-2.1
5,019,894	-		GFF5027	0.56	+0.9
5,019,894	-		GFF5027	0.56	+1.0
5,019,896	+		GFF5027	0.56	-0.1
5,019,902	-		GFF5027	0.57	-0.1
5,019,902	-		GFF5027	0.57	-1.6
5,019,902	-		GFF5027	0.57	-2.1
5,019,926	+		GFF5027	0.59	+0.5
5,019,934	-		GFF5027	0.60	+1.2
5,019,934	-		GFF5027	0.60	-0.4
5,019,936	-		GFF5027	0.60	+0.4
5,019,945	-		GFF5027	0.61	+0.6
5,019,973	-		GFF5027	0.64	+0.3
5,019,975	+		GFF5027	0.64	+0.7
5,019,975	+		GFF5027	0.64	-1.6
5,019,993	+		GFF5027	0.66	-0.1
5,020,030	+		GFF5027	0.70	+0.8
5,020,030	+		GFF5027	0.70	+1.0
5,020,035	+		GFF5027	0.70	+0.5
5,020,035	+		GFF5027	0.70	-1.1
5,020,038	-		GFF5027	0.70	-1.6
5,020,038	-		GFF5027	0.70	+0.9
5,020,038	-		GFF5027	0.70	-0.9
5,020,040	+		GFF5027	0.71	+0.3
5,020,040	+		GFF5027	0.71	+0.2
5,020,040	+		GFF5027	0.71	+0.5
5,020,040	+		GFF5027	0.71	+0.0
5,020,040	+		GFF5027	0.71	-0.8
5,020,040	+		GFF5027	0.71	-1.6
5,020,040	+		GFF5027	0.71	+0.2
5,020,040	+		GFF5027	0.71	+0.1
5,020,040	+		GFF5027	0.71	-0.3
5,020,043	-		GFF5027	0.71	+0.6
5,020,043	-		GFF5027	0.71	+0.4
5,020,048	-		GFF5027	0.71	-0.1
5,020,048	-		GFF5027	0.71	-1.1
5,020,048	-		GFF5027	0.71	+0.6
5,020,048	-		GFF5027	0.71	+0.8
5,020,048	-		GFF5027	0.71	-1.9
5,020,048	-		GFF5027	0.71	+1.6
5,020,048	-		GFF5027	0.71	+0.3
5,020,048	-		GFF5027	0.71	-1.8
5,020,048	-		GFF5027	0.71	-0.9
5,020,049	+		GFF5027	0.71	-0.7
5,020,049	+		GFF5027	0.71	+1.2
5,020,049	+		GFF5027	0.71	-0.5
5,020,049	-		GFF5027	0.71	-0.3
5,020,049	-		GFF5027	0.71	+0.7
5,020,055	-		GFF5027	0.72	+1.4
5,020,057	-		GFF5027	0.72	+0.9
5,020,074	-		GFF5027	0.74	+1.1
5,020,074	-		GFF5027	0.74	-1.5
5,020,074	-		GFF5027	0.74	-1.1
5,020,146	-		GFF5027	0.81	+0.1
5,020,168	+		GFF5027	0.83	-0.2
5,020,171	-		GFF5027	0.84	+1.7
5,020,176	-		GFF5027	0.84	+1.6
5,020,176	-		GFF5027	0.84	-1.1
5,020,185	-		GFF5027	0.85	-0.2
5,020,194	+		GFF5027	0.86	+0.8
5,020,199	+		GFF5027	0.87	+1.2
5,020,199	+		GFF5027	0.87	+0.5
5,020,199	+		GFF5027	0.87	-0.1
5,020,199	+		GFF5027	0.87	+0.1
5,020,199	+		GFF5027	0.87	-0.6
5,020,199	+		GFF5027	0.87	+0.8
5,020,200	-		GFF5027	0.87	+0.6
5,020,201	+		GFF5027	0.87	+0.5
5,020,201	+		GFF5027	0.87	-0.8
5,020,201	+		GFF5027	0.87	+0.5
5,020,201	+		GFF5027	0.87	-1.5
5,020,202	-		GFF5027	0.87	-0.1
5,020,207	-		GFF5027	0.87	-0.1
5,020,207	-		GFF5027	0.87	+0.9
5,020,207	-		GFF5027	0.87	-0.1
5,020,207	-		GFF5027	0.87	-0.1
5,020,207	-		GFF5027	0.87	-1.2
5,020,207	-		GFF5027	0.87	+1.5
5,020,207	-		GFF5027	0.87	+0.1
5,020,209	-		GFF5027	0.88	-2.6
5,020,209	-		GFF5027	0.88	+0.1
5,020,209	-		GFF5027	0.88	+0.3
5,020,209	-		GFF5027	0.88	-0.4
5,020,209	-		GFF5027	0.88	+0.4
5,020,209	-		GFF5027	0.88	-0.8
5,020,209	-		GFF5027	0.88	+1.2
5,020,217	-		GFF5027	0.88	+1.3
5,020,217	-		GFF5027	0.88	+1.1
5,020,224	+		GFF5027	0.89	+1.4
5,020,224	+		GFF5027	0.89	-0.3
5,020,232	-		GFF5027	0.90	-1.2
5,020,242	-				+0.7
5,020,266	-				-0.6
5,020,282	+				+0.0
5,020,284	-				-1.4
5,020,285	-				+0.6
5,020,296	+				-1.1
5,020,296	-				-0.1
5,020,362	-				+0.3
5,020,386	+				+0.5
5,020,386	+				-0.4
5,020,394	-				-1.1
5,020,412	+				-0.8
5,020,412	+				+1.8
5,020,412	+				-1.5
5,020,420	-				+0.7
5,020,420	-				+0.2
5,020,420	-				+0.5
5,020,433	-				-0.4
5,020,438	-				-0.4
5,020,446	-		GFF5028	0.10	-0.3
5,020,489	-		GFF5028	0.16	-0.7
5,020,489	-		GFF5028	0.16	-0.7
5,020,510	+		GFF5028	0.18	-0.1
5,020,510	+		GFF5028	0.18	+0.4
5,020,510	+		GFF5028	0.18	-0.3
5,020,510	+		GFF5028	0.18	+0.8
5,020,510	+		GFF5028	0.18	+1.9
5,020,518	-		GFF5028	0.19	-2.1
5,020,518	-		GFF5028	0.19	-0.0
5,020,518	-		GFF5028	0.19	+1.2
5,020,528	-		GFF5028	0.21	-0.2
5,020,534	+		GFF5028	0.21	-2.4
5,020,534	+		GFF5028	0.21	+0.7
5,020,534	+		GFF5028	0.21	-0.8
5,020,534	+		GFF5028	0.21	-0.0
5,020,542	-		GFF5028	0.22	+0.9
5,020,544	-		GFF5028	0.23	-0.9
5,020,552	-		GFF5028	0.24	-2.0
5,020,577	+		GFF5028	0.27	+1.1
5,020,579	+		GFF5028	0.27	+0.1
5,020,585	-		GFF5028	0.28	-0.4
5,020,587	-		GFF5028	0.28	-0.6
5,020,591	+		GFF5028	0.28	-0.5
5,020,591	+		GFF5028	0.28	-0.8
5,020,599	-		GFF5028	0.29	+0.2
5,020,599	-		GFF5028	0.29	-1.5
5,020,599	-		GFF5028	0.29	-0.0
5,020,599	-		GFF5028	0.29	-1.0
5,020,601	+		GFF5028	0.30	+1.1
5,020,604	-		GFF5028	0.30	-0.8
5,020,604	-		GFF5028	0.30	-1.6
5,020,619	+		GFF5028	0.32	-0.6
5,020,627	-		GFF5028	0.33	-0.3
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5,020,635	+		GFF5028	0.34	+0.9
5,020,635	+		GFF5028	0.34	-2.1
5,020,642	-		GFF5028	0.35	+1.4
5,020,660	-		GFF5028	0.37	+1.1
5,020,662	+		GFF5028	0.37	+0.9
5,020,665	+		GFF5028	0.38	+1.1
5,020,665	-		GFF5028	0.38	-0.0
5,020,673	-		GFF5028	0.39	+1.6
5,020,767	-		GFF5028	0.50	+0.1
5,020,775	+		GFF5028	0.51	+1.1
5,020,779	+		GFF5028	0.52	+0.0
5,020,807	-		GFF5028	0.55	+0.1
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5,020,931	-		GFF5028	0.71	-1.6
5,020,941	+		GFF5028	0.72	-2.0
5,020,950	+		GFF5028	0.73	+0.3
5,020,999	-		GFF5028	0.79	-1.8
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5,020,999	-		GFF5028	0.79	-0.3
5,021,009	-		GFF5028	0.80	-1.4
5,021,025	+		GFF5028	0.82	+0.1
5,021,064	+		GFF5028	0.87	+1.4
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5,021,072	-		GFF5028	0.88	+0.7
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5,021,087	+				-0.2
5,021,091	+				-0.5
5,021,095	-				+0.3
5,021,116	-				-0.3
5,021,140	-				-0.8
5,021,145	-				+0.6
5,021,152	+				+0.8
5,021,170	-				-0.1
5,021,191	-				-0.3
5,021,206	-				-0.2
5,021,214	-				+2.1
5,021,214	-				+0.4
5,021,253	-				+0.1
5,021,266	-				-1.4
5,021,273	+				+0.7
5,021,286	-				+0.1
5,021,290	-				-1.9
5,021,292	-				-0.2
5,021,298	+				-0.7
5,021,316	-		GFF5029	0.11	+1.0
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5,021,326	-		GFF5029	0.12	-1.2
5,021,330	+		GFF5029	0.12	-1.8