Strain Fitness in Sphingobium sp. HT1-2 around GFF5011

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
5,003,738	-				+0.4
5,003,748	-				+0.1
5,003,781	+				-0.2
5,003,781	-				+0.2
5,003,786	+				+0.3
5,003,786	+				+0.1
5,003,789	-				-0.3
5,003,794	-				+0.5
5,003,794	-				-0.0
5,003,794	-				+0.8
5,003,800	+				+1.0
5,003,808	-				+0.8
5,003,808	-				-0.5
5,003,808	-				+0.4
5,003,815	+				+0.1
5,003,815	+				+0.5
5,003,815	+				-0.1
5,003,815	+				+0.6
5,003,846	+				+0.4
5,003,853	+				-0.2
5,003,854	-				-0.6
5,003,859	+				+1.1
5,003,861	-		GFF5009	0.10	+0.7
5,003,861	-		GFF5009	0.10	+0.5
5,003,871	-		GFF5009	0.12	+0.5
5,003,879	+		GFF5009	0.14	-0.2
5,003,883	+		GFF5009	0.15	+0.6
5,003,886	-		GFF5009	0.15	+0.3
5,003,887	-		GFF5009	0.16	+0.3
5,003,887	-		GFF5009	0.16	+0.4
5,003,887	-		GFF5009	0.16	-0.3
5,003,887	-		GFF5009	0.16	+0.7
5,003,889	-		GFF5009	0.16	-0.2
5,003,907	-		GFF5009	0.20	+0.5
5,003,909	-		GFF5009	0.20	+0.1
5,003,930	+		GFF5009	0.24	-1.2
5,003,994	+		GFF5009	0.38	-0.8
5,004,013	+		GFF5009	0.42	+1.5
5,004,032	+		GFF5009	0.46	+0.7
5,004,032	+		GFF5009	0.46	-1.8
5,004,040	-		GFF5009	0.47	-1.0
5,004,047	+		GFF5009	0.49	-0.3
5,004,047	+		GFF5009	0.49	+0.3
5,004,047	+		GFF5009	0.49	-0.8
5,004,047	+		GFF5009	0.49	+0.3
5,004,047	+		GFF5009	0.49	+0.6
5,004,047	+		GFF5009	0.49	+0.5
5,004,047	+		GFF5009	0.49	-0.0
5,004,047	+		GFF5009	0.49	-0.1
5,004,055	-		GFF5009	0.50	-1.2
5,004,055	-		GFF5009	0.50	-0.7
5,004,055	-		GFF5009	0.50	+1.4
5,004,055	-		GFF5009	0.50	-0.3
5,004,055	-		GFF5009	0.50	+0.0
5,004,065	-		GFF5009	0.52	+0.5
5,004,065	-		GFF5009	0.52	+0.3
5,004,083	+		GFF5009	0.56	+0.5
5,004,083	+		GFF5009	0.56	-0.5
5,004,091	-		GFF5009	0.58	+0.6
5,004,140	+		GFF5009	0.68	+0.7
5,004,140	+		GFF5009	0.68	-1.7
5,004,148	-		GFF5009	0.70	-0.7
5,004,157	-		GFF5009	0.71	+1.3
5,004,169	-		GFF5009	0.74	+0.2
5,004,171	+		GFF5009	0.74	-1.6
5,004,178	+		GFF5009	0.76	+0.7
5,004,184	-		GFF5009	0.77	-0.3
5,004,186	-		GFF5009	0.77	+0.8
5,004,195	-		GFF5009	0.79	+0.3
5,004,200	-		GFF5009	0.80	-1.6
5,004,218	+		GFF5009	0.84	+1.5
5,004,226	-		GFF5009	0.86	-0.3
5,004,254	+				-1.1
5,004,259	+				+1.0
5,004,288	+				-0.5
5,004,288	+				-0.1
5,004,304	-				+0.5
5,004,313	+				-1.4
5,004,313	+				+0.3
5,004,352	-				+0.9
5,004,371	-		GFF5010	0.13	-0.0
5,004,388	+		GFF5010	0.17	+0.2
5,004,417	-		GFF5010	0.24	+0.5
5,004,444	-		GFF5010	0.31	+0.7
5,004,467	+		GFF5010	0.37	-0.8
5,004,467	+		GFF5010	0.37	-0.3
5,004,475	-		GFF5010	0.39	+0.4
5,004,475	-		GFF5010	0.39	-0.7
5,004,475	-		GFF5010	0.39	+0.8
5,004,475	-		GFF5010	0.39	-2.4
5,004,482	+		GFF5010	0.40	+0.5
5,004,483	-		GFF5010	0.41	-0.4
5,004,484	-		GFF5010	0.41	+1.5
5,004,502	+		GFF5010	0.45	+0.4
5,004,510	-		GFF5010	0.47	-0.9
5,004,510	-		GFF5010	0.47	+0.3
5,004,514	+		GFF5010	0.48	+0.3
5,004,534	-		GFF5010	0.53	+0.5
5,004,599	+		GFF5010	0.70	-1.0
5,004,613	-		GFF5010	0.73	+1.5
5,004,688	+				-0.6
5,004,695	+				-0.3
5,004,703	-				+0.4
5,004,703	-				-0.7
5,004,722	-				-1.6
5,004,724	-				+0.4
5,004,742	+				-1.0
5,004,806	-				+0.5
5,004,810	+				+0.7
5,004,810	+				-1.2
5,004,827	+				+0.6
5,004,827	-				+0.8
5,004,920	-				-0.0
5,004,920	-				+1.1
5,004,936	+				+2.5
5,004,940	-				+0.9
5,004,951	+				-0.5
5,004,951	+				+0.2
5,004,951	+				+0.3
5,004,951	+				+0.8
5,004,951	+				+0.7
5,004,951	+				+0.1
5,004,951	+				+0.2
5,004,951	+				+0.8
5,004,951	+				+1.4
5,004,951	+				+0.0
5,004,951	+				+1.5
5,004,951	+				-0.4
5,004,951	+				+0.0
5,004,951	+				+0.9
5,004,951	+				+0.9
5,004,951	+				-0.3
5,004,951	+				-1.0
5,004,951	+				+0.5
5,004,951	+				+0.6
5,004,951	+				+1.5
5,004,951	+				+0.9
5,004,951	+				-0.1
5,004,951	+				-1.8
5,004,951	+				-0.0
5,004,951	+				+0.5
5,004,951	+				-0.1
5,004,951	+				-0.8
5,004,951	+				+0.2
5,004,951	+				+0.5
5,004,951	+				-1.7
5,004,951	+				+0.4
5,004,959	-		GFF5011	0.10	+0.9
5,004,959	-		GFF5011	0.10	+0.1
5,004,959	-		GFF5011	0.10	-0.3
5,004,959	-		GFF5011	0.10	+1.2
5,004,959	-		GFF5011	0.10	+1.2
5,004,959	-		GFF5011	0.10	-0.8
5,004,959	-		GFF5011	0.10	+0.7
5,004,959	-		GFF5011	0.10	-0.7
5,004,959	-		GFF5011	0.10	-0.1
5,004,959	-		GFF5011	0.10	+0.2
5,004,959	-		GFF5011	0.10	-0.6
5,004,959	-		GFF5011	0.10	-1.7
5,004,959	-		GFF5011	0.10	+0.2
5,004,959	-		GFF5011	0.10	+0.7
5,004,959	-		GFF5011	0.10	-0.0
5,004,959	-		GFF5011	0.10	+0.8
5,004,959	-		GFF5011	0.10	+0.5
5,004,959	-		GFF5011	0.10	-0.4
5,004,959	-		GFF5011	0.10	+1.2
5,004,959	-		GFF5011	0.10	+1.3
5,004,959	-		GFF5011	0.10	+1.5
5,004,959	-		GFF5011	0.10	+0.9
5,004,959	-		GFF5011	0.10	-0.1
5,004,959	-		GFF5011	0.10	-2.4
5,004,959	-		GFF5011	0.10	-0.5
5,004,959	-		GFF5011	0.10	+0.6
5,004,959	-		GFF5011	0.10	+0.7
5,004,959	-		GFF5011	0.10	+0.0
5,004,959	-		GFF5011	0.10	-0.2
5,004,959	-		GFF5011	0.10	+1.0
5,004,959	-		GFF5011	0.10	-0.2
5,004,959	-		GFF5011	0.10	-0.8
5,004,959	-		GFF5011	0.10	+0.7
5,004,959	-		GFF5011	0.10	-0.3
5,004,959	-		GFF5011	0.10	+0.2
5,004,959	-		GFF5011	0.10	-1.7
5,004,959	-		GFF5011	0.10	+0.5
5,004,959	-		GFF5011	0.10	+1.8
5,004,959	-		GFF5011	0.10	-1.3
5,004,959	-		GFF5011	0.10	-0.9
5,004,961	+		GFF5011	0.10	+0.5
5,004,961	-		GFF5011	0.10	+0.1
5,004,969	-		GFF5011	0.11	-0.0
5,004,974	+		GFF5011	0.11	+1.8
5,004,975	-		GFF5011	0.11	+1.1
5,005,038	+		GFF5011	0.14	-0.9
5,005,043	+		GFF5011	0.14	-0.1
5,005,043	+		GFF5011	0.14	+2.3
5,005,051	-		GFF5011	0.14	+0.2
5,005,063	-		GFF5011	0.15	-1.2
5,005,076	-		GFF5011	0.15	+0.5
5,005,086	+		GFF5011	0.16	-0.6
5,005,102	+		GFF5011	0.16	+0.9
5,005,107	+		GFF5011	0.17	-1.5
5,005,112	+		GFF5011	0.17	+0.5
5,005,112	+		GFF5011	0.17	-0.7
5,005,120	-		GFF5011	0.17	-0.2
5,005,120	-		GFF5011	0.17	-0.4
5,005,120	-		GFF5011	0.17	-0.2
5,005,120	-		GFF5011	0.17	+0.6
5,005,120	-		GFF5011	0.17	+0.5
5,005,120	-		GFF5011	0.17	-1.6
5,005,127	+		GFF5011	0.17	-0.2
5,005,134	+		GFF5011	0.18	-1.7
5,005,134	-		GFF5011	0.18	+1.2
5,005,135	-		GFF5011	0.18	-1.8
5,005,137	-		GFF5011	0.18	-0.1
5,005,142	-		GFF5011	0.18	-0.5
5,005,144	+		GFF5011	0.18	+0.6
5,005,156	+		GFF5011	0.19	+0.5
5,005,156	+		GFF5011	0.19	-0.2
5,005,160	+		GFF5011	0.19	-0.5
5,005,164	-		GFF5011	0.19	+0.1
5,005,179	-		GFF5011	0.20	-1.5
5,005,187	-		GFF5011	0.20	+1.2
5,005,187	-		GFF5011	0.20	-0.5
5,005,201	+		GFF5011	0.21	+0.0
5,005,207	-		GFF5011	0.21	-1.2
5,005,210	+		GFF5011	0.21	+0.4
5,005,233	-		GFF5011	0.22	-0.1
5,005,243	+		GFF5011	0.22	-0.0
5,005,251	+		GFF5011	0.23	-0.5
5,005,265	-		GFF5011	0.23	+0.5
5,005,294	+		GFF5011	0.25	+0.4
5,005,302	-		GFF5011	0.25	+0.5
5,005,308	+		GFF5011	0.25	-0.2
5,005,397	-		GFF5011	0.29	+1.1
5,005,402	-		GFF5011	0.29	-0.5
5,005,407	-		GFF5011	0.29	+1.0
5,005,407	-		GFF5011	0.29	-0.6
5,005,414	-		GFF5011	0.30	+0.5
5,005,424	+		GFF5011	0.30	-2.3
5,005,424	+		GFF5011	0.30	-0.2
5,005,424	+		GFF5011	0.30	-1.6
5,005,424	+		GFF5011	0.30	+0.5
5,005,424	+		GFF5011	0.30	-0.9
5,005,432	-		GFF5011	0.30	-0.7
5,005,432	-		GFF5011	0.30	+0.5
5,005,434	+		GFF5011	0.30	-0.7
5,005,434	-		GFF5011	0.30	-0.5
5,005,481	+		GFF5011	0.32	+0.7
5,005,502	-		GFF5011	0.33	-0.0
5,005,502	-		GFF5011	0.33	+0.5
5,005,507	-		GFF5011	0.34	-1.5
5,005,509	+		GFF5011	0.34	+0.3
5,005,608	+		GFF5011	0.38	-0.6
5,005,665	+		GFF5011	0.40	+1.0
5,005,673	-		GFF5011	0.41	+0.3
5,005,673	-		GFF5011	0.41	+1.7
5,005,673	-		GFF5011	0.41	-0.5
5,005,673	-		GFF5011	0.41	+0.7
5,005,682	+		GFF5011	0.41	-0.3
5,005,693	-		GFF5011	0.41	+0.3
5,005,737	+		GFF5011	0.43	-0.3
5,005,787	+		GFF5011	0.45	-0.9
5,005,789	-		GFF5011	0.46	-0.0
5,005,793	+		GFF5011	0.46	-0.9
5,005,796	-		GFF5011	0.46	+1.1
5,005,796	-		GFF5011	0.46	+0.4
5,005,837	+		GFF5011	0.48	-0.9
5,005,837	+		GFF5011	0.48	+0.0
5,005,837	+		GFF5011	0.48	-0.0
5,005,837	+		GFF5011	0.48	-2.6
5,005,845	-		GFF5011	0.48	-0.8
5,005,845	-		GFF5011	0.48	-0.2
5,005,905	-		GFF5011	0.50	+1.6
5,005,905	-		GFF5011	0.50	+0.2
5,005,905	-		GFF5011	0.50	-0.2
5,005,944	+		GFF5011	0.52	-0.8
5,006,026	+		GFF5011	0.56	+1.6
5,006,031	-		GFF5011	0.56	+0.3
5,006,034	+		GFF5011	0.56	-0.6
5,006,034	+		GFF5011	0.56	-0.3
5,006,046	-		GFF5011	0.56	-0.7
5,006,046	-		GFF5011	0.56	+1.5
5,006,046	-		GFF5011	0.56	+0.4
5,006,061	+		GFF5011	0.57	+0.7
5,006,067	+		GFF5011	0.57	-0.1
5,006,067	+		GFF5011	0.57	-0.5
5,006,067	+		GFF5011	0.57	-0.7
5,006,067	+		GFF5011	0.57	+1.1
5,006,069	-		GFF5011	0.57	+0.1
5,006,075	-		GFF5011	0.58	+0.1
5,006,090	+		GFF5011	0.58	-0.3
5,006,159	+		GFF5011	0.61	+1.1
5,006,167	-		GFF5011	0.62	-0.7
5,006,184	+		GFF5011	0.62	+0.1
5,006,203	+		GFF5011	0.63	+1.4
5,006,203	+		GFF5011	0.63	+1.0
5,006,211	-		GFF5011	0.63	+0.5
5,006,211	-		GFF5011	0.63	+0.7
5,006,211	-		GFF5011	0.63	-2.0
5,006,225	+		GFF5011	0.64	+0.6
5,006,230	+		GFF5011	0.64	-1.4
5,006,230	+		GFF5011	0.64	+0.4
5,006,230	+		GFF5011	0.64	+1.2
5,006,230	+		GFF5011	0.64	-2.0
5,006,230	+		GFF5011	0.64	+1.1
5,006,230	+		GFF5011	0.64	-1.2
5,006,230	+		GFF5011	0.64	-2.4
5,006,238	-		GFF5011	0.65	+0.1
5,006,238	-		GFF5011	0.65	-1.7
5,006,260	+		GFF5011	0.65	-0.2
5,006,260	+		GFF5011	0.65	-0.9
5,006,261	-		GFF5011	0.66	+1.3
5,006,265	+		GFF5011	0.66	+1.1
5,006,265	+		GFF5011	0.66	+0.3
5,006,265	+		GFF5011	0.66	-0.6
5,006,265	+		GFF5011	0.66	+1.4
5,006,265	+		GFF5011	0.66	+1.0
5,006,265	+		GFF5011	0.66	+0.8
5,006,265	+		GFF5011	0.66	-0.4
5,006,265	+		GFF5011	0.66	+0.5
5,006,268	-		GFF5011	0.66	-0.5
5,006,270	+		GFF5011	0.66	+0.1
5,006,273	-		GFF5011	0.66	-0.8
5,006,273	-		GFF5011	0.66	-0.0
5,006,273	-		GFF5011	0.66	-3.3
5,006,273	-		GFF5011	0.66	+0.3
5,006,273	-		GFF5011	0.66	-2.4
5,006,287	+		GFF5011	0.67	+0.3
5,006,287	+		GFF5011	0.67	-0.2
5,006,295	+		GFF5011	0.67	-0.7
5,006,295	+		GFF5011	0.67	-0.2
5,006,316	-		GFF5011	0.68	+1.2
5,006,322	-		GFF5011	0.68	-0.6
5,006,416	+		GFF5011	0.72	-0.2
5,006,416	+		GFF5011	0.72	-1.6
5,006,424	-		GFF5011	0.72	+0.2
5,006,557	-		GFF5011	0.78	-0.5
5,006,567	-		GFF5011	0.78	+0.7
5,006,572	-		GFF5011	0.79	-0.1
5,006,630	-		GFF5011	0.81	+0.0
5,006,648	+		GFF5011	0.82	-0.4
5,006,668	+		GFF5011	0.83	+0.1
5,006,676	-		GFF5011	0.83	+0.3
5,006,676	-		GFF5011	0.83	+0.5
5,006,679	+		GFF5011	0.83	-0.9
5,006,679	+		GFF5011	0.83	+0.5
5,006,679	+		GFF5011	0.83	+0.3
5,006,687	-		GFF5011	0.84	-1.9
5,006,738	+		GFF5011	0.86	-1.1
5,006,774	+		GFF5011	0.87	+0.6
5,006,774	+		GFF5011	0.87	-2.0
5,006,781	+		GFF5011	0.88	+0.4
5,006,782	-		GFF5011	0.88	-0.5
5,006,785	+		GFF5011	0.88	-0.4
5,006,786	+		GFF5011	0.88	+0.1
5,006,805	-		GFF5011	0.89	+1.7
5,006,814	-		GFF5011	0.89	+0.5
5,006,814	-		GFF5011	0.89	+2.1
5,006,814	-		GFF5011	0.89	+0.0
5,006,814	-		GFF5011	0.89	+0.8
5,006,816	+		GFF5011	0.89	+0.4
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