Strain Fitness in Sphingobium sp. HT1-2 around GFF4991

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,990,164	+				-1.5
4,990,167	-				+2.2
4,990,169	+				-0.9
4,990,177	-		GFF4990	0.10	-0.1
4,990,264	+		GFF4990	0.19	+1.4
4,990,272	+		GFF4990	0.20	-0.2
4,990,276	+		GFF4990	0.20	+0.5
4,990,293	+		GFF4990	0.22	+0.4
4,990,301	+		GFF4990	0.23	+1.2
4,990,301	+		GFF4990	0.23	+0.3
4,990,301	+		GFF4990	0.23	+0.0
4,990,309	-		GFF4990	0.24	+0.1
4,990,309	-		GFF4990	0.24	-0.3
4,990,309	-		GFF4990	0.24	+0.1
4,990,309	-		GFF4990	0.24	+0.8
4,990,319	-		GFF4990	0.25	+1.1
4,990,325	-		GFF4990	0.25	+0.0
4,990,331	-		GFF4990	0.26	+0.4
4,990,337	+		GFF4990	0.27	-0.0
4,990,337	+		GFF4990	0.27	+1.0
4,990,345	-		GFF4990	0.27	-0.5
4,990,369	-		GFF4990	0.30	+1.1
4,990,373	+		GFF4990	0.30	+0.8
4,990,381	-		GFF4990	0.31	-0.1
4,990,381	-		GFF4990	0.31	+1.0
4,990,403	+		GFF4990	0.33	-0.9
4,990,403	+		GFF4990	0.33	+0.3
4,990,411	-		GFF4990	0.34	-0.2
4,990,411	-		GFF4990	0.34	+0.5
4,990,411	-		GFF4990	0.34	-0.0
4,990,411	-		GFF4990	0.34	-0.6
4,990,411	-		GFF4990	0.34	+0.0
4,990,411	-		GFF4990	0.34	+1.2
4,990,450	+		GFF4990	0.38	+1.3
4,990,450	+		GFF4990	0.38	+1.1
4,990,452	+		GFF4990	0.38	+0.3
4,990,458	-		GFF4990	0.39	+1.2
4,990,460	+		GFF4990	0.39	-1.6
4,990,460	-		GFF4990	0.39	-0.9
4,990,497	+		GFF4990	0.43	-1.5
4,990,513	-		GFF4990	0.45	+1.3
4,990,519	+		GFF4990	0.45	+0.8
4,990,527	+		GFF4990	0.46	-1.3
4,990,527	-		GFF4990	0.46	+0.8
4,990,537	-		GFF4990	0.47	-0.8
4,990,537	-		GFF4990	0.47	-0.9
4,990,541	-		GFF4990	0.47	-0.2
4,990,543	+		GFF4990	0.48	+0.8
4,990,543	+		GFF4990	0.48	+1.8
4,990,543	+		GFF4990	0.48	-0.1
4,990,553	+		GFF4990	0.49	-0.2
4,990,558	+		GFF4990	0.49	+1.3
4,990,562	-		GFF4990	0.50	-0.0
4,990,566	-		GFF4990	0.50	-1.7
4,990,566	-		GFF4990	0.50	+0.7
4,990,566	-		GFF4990	0.50	+0.6
4,990,566	-		GFF4990	0.50	-0.2
4,990,566	-		GFF4990	0.50	+0.7
4,990,578	+		GFF4990	0.51	-0.3
4,990,586	-		GFF4990	0.52	-0.2
4,990,586	-		GFF4990	0.52	-0.2
4,990,586	-		GFF4990	0.52	+0.1
4,990,637	+		GFF4990	0.57	-1.6
4,990,637	-		GFF4990	0.57	-0.6
4,990,645	-		GFF4990	0.58	-1.2
4,990,673	-		GFF4990	0.61	+1.5
4,990,713	+		GFF4990	0.65	+1.2
4,990,728	-		GFF4990	0.66	-0.6
4,990,733	+		GFF4990	0.67	+0.8
4,990,741	-		GFF4990	0.68	+0.7
4,990,741	-		GFF4990	0.68	+0.8
4,990,780	-		GFF4990	0.72	+0.4
4,990,788	-		GFF4990	0.73	+1.5
4,990,811	+		GFF4990	0.75	+0.3
4,990,818	+		GFF4990	0.76	-1.0
4,990,821	-		GFF4990	0.76	-0.7
4,990,828	+		GFF4990	0.77	+0.4
4,990,838	+		GFF4990	0.78	+1.5
4,990,846	-		GFF4990	0.78	+0.1
4,990,846	-		GFF4990	0.78	-0.4
4,990,846	-		GFF4990	0.78	+0.2
4,990,846	-		GFF4990	0.78	+0.7
4,990,846	-		GFF4990	0.78	+0.2
4,990,851	-		GFF4990	0.79	+0.6
4,990,886	+		GFF4990	0.83	+0.6
4,990,895	-		GFF4990	0.83	-0.0
4,990,909	+		GFF4990	0.85	+0.1
4,990,916	+		GFF4990	0.86	-0.1
4,990,925	-		GFF4990	0.87	+1.5
4,990,943	-		GFF4990	0.88	+0.9
4,990,970	-				+1.0
4,990,973	+				+0.5
4,990,981	-				-0.9
4,991,008	+				+1.0
4,991,008	+				+1.1
4,991,008	+				+0.9
4,991,016	-				+0.1
4,991,025	+				-0.3
4,991,043	-				-0.6
4,991,048	-				+0.1
4,991,057	+				+0.1
4,991,057	+				+0.1
4,991,070	-				+0.6
4,991,123	+				+0.9
4,991,128	+				+0.8
4,991,128	+				+0.9
4,991,134	+				+0.9
4,991,134	+				+0.8
4,991,142	-				-0.4
4,991,142	-				-0.5
4,991,142	-				+0.4
4,991,144	+				-0.5
4,991,152	-				-0.4
4,991,162	-				+0.7
4,991,171	+				+0.1
4,991,179	-				+0.2
4,991,192	+				+0.4
4,991,210	-				-0.2
4,991,215	+		GFF4991	0.10	+0.7
4,991,215	+		GFF4991	0.10	-0.1
4,991,215	+		GFF4991	0.10	-2.7
4,991,215	+		GFF4991	0.10	-2.0
4,991,238	-		GFF4991	0.15	-0.4
4,991,242	-		GFF4991	0.15	-0.7
4,991,284	-		GFF4991	0.24	+0.1
4,991,290	+		GFF4991	0.25	-1.5
4,991,290	+		GFF4991	0.25	+1.2
4,991,298	-		GFF4991	0.26	-0.4
4,991,308	-		GFF4991	0.28	+1.1
4,991,362	-		GFF4991	0.39	-0.0
4,991,365	+		GFF4991	0.39	+0.8
4,991,365	+		GFF4991	0.39	+0.5
4,991,365	+		GFF4991	0.39	-0.7
4,991,366	-		GFF4991	0.40	+0.5
4,991,366	-		GFF4991	0.40	+0.5
4,991,373	-		GFF4991	0.41	+1.3
4,991,373	-		GFF4991	0.41	-0.3
4,991,373	-		GFF4991	0.41	+0.1
4,991,373	-		GFF4991	0.41	-0.9
4,991,373	-		GFF4991	0.41	-0.8
4,991,373	-		GFF4991	0.41	+0.5
4,991,394	-		GFF4991	0.45	-0.8
4,991,407	+		GFF4991	0.48	-0.5
4,991,407	+		GFF4991	0.48	+1.4
4,991,415	-		GFF4991	0.49	+0.1
4,991,421	+		GFF4991	0.50	-0.3
4,991,421	+		GFF4991	0.50	+0.0
4,991,421	+		GFF4991	0.50	-0.6
4,991,429	-		GFF4991	0.52	+0.6
4,991,429	-		GFF4991	0.52	-1.6
4,991,429	-		GFF4991	0.52	-0.7
4,991,429	-		GFF4991	0.52	+0.3
4,991,435	-		GFF4991	0.53	+1.7
4,991,449	+		GFF4991	0.56	+0.4
4,991,449	+		GFF4991	0.56	+0.4
4,991,449	+		GFF4991	0.56	+1.1
4,991,449	+		GFF4991	0.56	+1.0
4,991,449	+		GFF4991	0.56	+0.7
4,991,457	-		GFF4991	0.57	+0.2
4,991,457	-		GFF4991	0.57	-0.1
4,991,457	-		GFF4991	0.57	-0.1
4,991,457	-		GFF4991	0.57	-0.4
4,991,459	+		GFF4991	0.58	-0.5
4,991,459	+		GFF4991	0.58	-1.0
4,991,459	+		GFF4991	0.58	+0.7
4,991,459	+		GFF4991	0.58	-0.0
4,991,459	+		GFF4991	0.58	+0.1
4,991,463	+		GFF4991	0.58	+0.2
4,991,467	-		GFF4991	0.59	+0.6
4,991,467	-		GFF4991	0.59	-0.8
4,991,467	-		GFF4991	0.59	-0.3
4,991,467	-		GFF4991	0.59	+0.1
4,991,467	-		GFF4991	0.59	+0.2
4,991,467	-		GFF4991	0.59	+0.8
4,991,512	+		GFF4991	0.68	+0.5
4,991,520	-		GFF4991	0.70	-0.5
4,991,523	+		GFF4991	0.70	-1.0
4,991,530	-		GFF4991	0.72	+0.6
4,991,550	-		GFF4991	0.75	-0.5
4,991,550	-		GFF4991	0.75	+1.3
4,991,550	-		GFF4991	0.75	+1.9
4,991,586	-		GFF4991	0.82	-0.1
4,991,610	+		GFF4991	0.87	-0.2
4,991,610	+		GFF4991	0.87	+0.6
4,991,610	+		GFF4991	0.87	-1.6
4,991,618	-		GFF4991	0.89	+0.6
4,991,618	-		GFF4991	0.89	+0.7
4,991,618	-		GFF4991	0.89	-0.8
4,991,640	-				-0.2
4,991,643	+				-0.5
4,991,658	+				+0.2
4,991,670	+				+0.5
4,991,670	+				+1.1
4,991,670	+				+0.2
4,991,678	-				-2.0
4,991,685	+				+1.1
4,991,711	+				-0.3
4,991,746	+				+0.8
4,991,749	-				+0.7
4,991,749	-				+0.5
4,991,774	+				+0.2
4,991,783	+				+0.3
4,991,846	-				+0.1
4,991,857	+				-0.5
4,991,860	-				-1.5
4,991,860	-				+0.4
4,991,879	+				-0.5
4,991,887	+				-0.3
4,991,947	-		GFF4992	0.47	+1.7
4,992,040	-				+0.1
4,992,040	-				+0.2
4,992,098	+				-1.6
4,992,098	+				+0.6
4,992,127	-				-1.0
4,992,127	-				+0.2
4,992,131	-				+1.4
4,992,185	-				+0.0
4,992,230	+				+0.2
4,992,230	+				+0.3
4,992,235	+				+0.7
4,992,243	-				-0.6
4,992,243	-				+0.7
4,992,245	+				-0.3
4,992,265	+				-0.8
4,992,323	-		GFF4993	0.25	+0.1
4,992,341	+		GFF4993	0.43	-0.0
4,992,353	+		GFF4993	0.55	-0.0
4,992,353	+		GFF4993	0.55	-1.7
4,992,353	+		GFF4993	0.55	-0.7
4,992,359	-		GFF4993	0.61	-2.0
4,992,359	-		GFF4993	0.61	+0.7
4,992,360	+		GFF4993	0.62	-0.0
4,992,360	+		GFF4993	0.62	+0.6
4,992,361	-		GFF4993	0.63	+0.6
4,992,361	-		GFF4993	0.63	-0.6
4,992,361	-		GFF4993	0.63	+1.1
4,992,364	-		GFF4993	0.66	+0.4
4,992,374	+		GFF4993	0.75	-1.5
4,992,374	+		GFF4993	0.75	+0.4
4,992,374	+		GFF4993	0.75	+0.3
4,992,374	+		GFF4993	0.75	+0.8
4,992,381	+		GFF4993	0.82	-0.7
4,992,381	+		GFF4993	0.82	-0.2
4,992,382	-		GFF4993	0.83	+1.0
4,992,382	-		GFF4993	0.83	+0.1
4,992,382	-		GFF4993	0.83	-0.7
4,992,389	-				-1.7
4,992,419	+		GFF4994	0.14	-0.4
4,992,419	+		GFF4994	0.14	+0.6
4,992,427	-		GFF4994	0.19	+0.5
4,992,474	+		GFF4994	0.50	-0.3
4,992,487	-		GFF4994	0.58	+0.3
4,992,487	-		GFF4994	0.58	-2.2
4,992,491	+		GFF4994	0.61	-0.0
4,992,494	-		GFF4994	0.63	-1.0
4,992,494	-		GFF4994	0.63	-2.2
4,992,496	+		GFF4994	0.64	-0.6
4,992,504	-		GFF4994	0.69	-0.0
4,992,504	-		GFF4994	0.69	+0.5
4,992,514	-		GFF4994	0.76	+1.1
4,992,531	+		GFF4994	0.87	+0.5
4,992,531	+		GFF4994	0.87	-0.0
4,992,531	+		GFF4994	0.87	-1.2
4,992,531	+		GFF4994	0.87	-0.6
4,992,531	+		GFF4994	0.87	-0.5
4,992,531	+		GFF4994	0.87	-0.8
4,992,531	+		GFF4994	0.87	+1.1
4,992,531	+		GFF4994	0.87	-0.4
4,992,531	+		GFF4994	0.87	+0.6
4,992,531	+		GFF4994	0.87	+0.9
4,992,539	-				+1.4
4,992,539	-				-0.1
4,992,539	-				+0.7
4,992,539	-				-0.1
4,992,575	+				+0.1
4,992,575	+				+0.8
4,992,575	+				+0.9
4,992,575	+				-0.0
4,992,575	+				-0.5
4,992,575	+				-1.1
4,992,575	+				+0.6
4,992,575	+				-0.2
4,992,575	+				-0.0
4,992,575	+				+0.7
4,992,575	+				+0.4
4,992,575	+				-1.6
4,992,575	+				+0.3
4,992,575	+				-1.7
4,992,575	+				-1.4
4,992,575	+				-0.1
4,992,575	+				+0.2
4,992,575	+				+0.7
4,992,575	+				+1.0
4,992,583	-				+0.1
4,992,583	-				-1.1
4,992,583	-				+0.1
4,992,583	-				+1.0
4,992,583	-				-2.0
4,992,583	-				+0.8
4,992,583	-				-0.5
4,992,583	-				+1.0
4,992,583	-				+0.8
4,992,583	-				+0.5
4,992,583	-				-0.7
4,992,583	-				+0.5
4,992,583	-				-0.6
4,992,583	-				-0.2
4,992,583	-				-1.4
4,992,583	-				+0.4
4,992,583	-				+1.3
4,992,583	-				-0.1
4,992,583	-				-1.5
4,992,583	-				-0.8
4,992,583	-				+0.5
4,992,639	+				-0.3
4,992,639	+				-0.6
4,992,647	-				-1.1
4,992,647	-				-0.4
4,992,647	-				+0.4
4,992,647	-				-2.5
4,992,651	-				+0.7
4,992,668	-				+0.4