Strain Fitness in Sphingobium sp. HT1-2 around GFF4988

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,986,892	+		GFF4985	0.59	+1.3
4,986,900	-		GFF4985	0.60	-0.6
4,986,900	-		GFF4985	0.60	-2.1
4,986,930	-		GFF4985	0.65	+1.0
4,986,930	-		GFF4985	0.65	-1.6
4,986,932	+		GFF4985	0.65	+0.0
4,986,932	+		GFF4985	0.65	+0.8
4,986,990	+		GFF4985	0.74	-0.7
4,986,990	-		GFF4985	0.74	-0.2
4,986,992	-		GFF4985	0.75	-0.7
4,986,995	-		GFF4985	0.75	+0.1
4,986,999	-		GFF4985	0.76	+0.3
4,987,000	-		GFF4985	0.76	-0.7
4,987,008	-		GFF4985	0.77	+0.2
4,987,008	-		GFF4985	0.77	-0.7
4,987,008	-		GFF4985	0.77	+1.2
4,987,010	+		GFF4985	0.77	-0.3
4,987,010	+		GFF4985	0.77	-0.3
4,987,010	+		GFF4985	0.77	-0.1
4,987,010	+		GFF4985	0.77	+1.7
4,987,010	+		GFF4985	0.77	+0.0
4,987,010	-		GFF4985	0.77	-0.9
4,987,013	-		GFF4985	0.78	-2.4
4,987,018	-		GFF4985	0.79	+1.2
4,987,018	-		GFF4985	0.79	+0.6
4,987,018	-		GFF4985	0.79	+0.9
4,987,030	+		GFF4985	0.81	+0.8
4,987,034	-		GFF4985	0.81	+0.8
4,987,056	+		GFF4985	0.85	-0.8
4,987,068	-		GFF4985	0.86	+0.0
4,987,074	-		GFF4985	0.87	-0.5
4,987,081	+		GFF4985	0.88	-1.0
4,987,096	+				+0.4
4,987,096	+				-0.0
4,987,104	-				+0.9
4,987,105	+				+0.5
4,987,106	+				-0.3
4,987,106	-				+0.1
4,987,106	-				+0.4
4,987,106	-				+1.1
4,987,106	-				+0.6
4,987,106	-				-0.8
4,987,115	+				-1.0
4,987,118	-				+0.4
4,987,123	-				+0.2
4,987,123	-				-0.3
4,987,123	-				-1.9
4,987,134	+				+0.8
4,987,142	-				+0.6
4,987,147	-				-0.1
4,987,147	-				+0.7
4,987,167	+				-0.3
4,987,175	-				-2.3
4,987,175	-				-0.0
4,987,185	-				+0.8
4,987,187	+				+1.7
4,987,187	+				+0.6
4,987,187	+				+1.5
4,987,187	+				+1.7
4,987,187	+				+1.1
4,987,187	+				+1.3
4,987,187	+				+0.6
4,987,187	+				-0.7
4,987,195	-				-0.0
4,987,195	-				+0.1
4,987,195	-				+0.8
4,987,195	-				-0.1
4,987,195	-				-0.3
4,987,195	-				+0.5
4,987,195	-				+1.1
4,987,200	+				-0.8
4,987,208	-				-0.3
4,987,208	-				-0.7
4,987,208	-				-0.0
4,987,216	+		GFF4986	0.14	+1.1
4,987,219	-		GFF4986	0.15	+0.1
4,987,221	+		GFF4986	0.16	+0.4
4,987,241	-		GFF4986	0.26	+1.0
4,987,247	+		GFF4986	0.29	-0.0
4,987,247	+		GFF4986	0.29	+0.5
4,987,247	+		GFF4986	0.29	+1.2
4,987,247	+		GFF4986	0.29	-1.0
4,987,247	+		GFF4986	0.29	-0.4
4,987,255	-		GFF4986	0.33	+0.7
4,987,255	-		GFF4986	0.33	-1.4
4,987,257	+		GFF4986	0.34	-0.2
4,987,265	-		GFF4986	0.38	+0.7
4,987,281	+		GFF4986	0.46	+0.2
4,987,415	-				+0.7
4,987,426	-				-0.6
4,987,461	+		GFF4987	0.17	+0.9
4,987,469	-		GFF4987	0.19	-0.2
4,987,469	-		GFF4987	0.19	-0.1
4,987,474	-		GFF4987	0.20	-0.1
4,987,479	+		GFF4987	0.21	-1.7
4,987,481	+		GFF4987	0.21	+0.8
4,987,484	+		GFF4987	0.22	+2.2
4,987,487	-		GFF4987	0.23	-0.7
4,987,490	+		GFF4987	0.23	-0.9
4,987,522	-		GFF4987	0.31	+0.1
4,987,551	+		GFF4987	0.37	-1.5
4,987,551	+		GFF4987	0.37	-1.5
4,987,551	+		GFF4987	0.37	+0.1
4,987,554	-		GFF4987	0.38	-0.2
4,987,559	-		GFF4987	0.39	+0.8
4,987,574	-		GFF4987	0.42	+1.3
4,987,574	-		GFF4987	0.42	+0.8
4,987,604	+		GFF4987	0.49	+0.3
4,987,604	+		GFF4987	0.49	-1.8
4,987,612	-		GFF4987	0.51	-0.1
4,987,612	-		GFF4987	0.51	-0.8
4,987,612	-		GFF4987	0.51	+0.9
4,987,662	+		GFF4987	0.62	+0.7
4,987,681	+		GFF4987	0.66	+0.8
4,987,681	+		GFF4987	0.66	+0.7
4,987,681	+		GFF4987	0.66	-0.2
4,987,681	+		GFF4987	0.66	-0.6
4,987,686	+		GFF4987	0.68	-0.0
4,987,689	-		GFF4987	0.68	-0.3
4,987,689	-		GFF4987	0.68	+0.7
4,987,728	+		GFF4987	0.77	+0.9
4,987,831	+				-0.3
4,987,831	+				-0.8
4,987,832	-				-0.5
4,987,838	-				+1.1
4,987,839	-				+0.9
4,987,839	-				+1.7
4,987,855	-				-0.1
4,987,855	-				+0.2
4,987,855	-				+1.6
4,987,871	+				+1.5
4,987,879	-				+0.1
4,987,896	-				+0.2
4,987,927	+				+0.7
4,987,945	-				+0.4
4,987,947	-				+2.0
4,987,978	+		GFF4988	0.11	+0.7
4,987,997	-		GFF4988	0.13	-0.7
4,987,997	-		GFF4988	0.13	-1.0
4,987,997	-		GFF4988	0.13	+0.6
4,988,016	-		GFF4988	0.16	+0.7
4,988,027	+		GFF4988	0.17	-1.5
4,988,036	-		GFF4988	0.18	+0.4
4,988,050	-		GFF4988	0.20	+0.9
4,988,063	-		GFF4988	0.21	+0.2
4,988,079	+		GFF4988	0.23	-0.2
4,988,079	+		GFF4988	0.23	+1.0
4,988,085	-		GFF4988	0.24	-0.6
4,988,087	-		GFF4988	0.24	+0.2
4,988,095	-		GFF4988	0.25	+0.3
4,988,104	+		GFF4988	0.27	+0.2
4,988,104	+		GFF4988	0.27	+0.0
4,988,112	-		GFF4988	0.28	-1.1
4,988,128	+		GFF4988	0.30	+1.3
4,988,131	-		GFF4988	0.30	-0.7
4,988,138	+		GFF4988	0.31	+0.9
4,988,138	+		GFF4988	0.31	-1.6
4,988,143	+		GFF4988	0.31	+0.0
4,988,143	+		GFF4988	0.31	+0.0
4,988,146	-		GFF4988	0.32	-0.9
4,988,190	+		GFF4988	0.37	+0.2
4,988,196	+		GFF4988	0.38	+0.2
4,988,196	+		GFF4988	0.38	-1.5
4,988,196	+		GFF4988	0.38	+0.7
4,988,204	-		GFF4988	0.39	-2.2
4,988,204	-		GFF4988	0.39	-0.1
4,988,214	+		GFF4988	0.40	-0.3
4,988,222	-		GFF4988	0.41	+1.1
4,988,222	-		GFF4988	0.41	-0.0
4,988,252	+		GFF4988	0.45	-0.4
4,988,264	-		GFF4988	0.47	+0.8
4,988,270	-		GFF4988	0.47	-0.2
4,988,270	-		GFF4988	0.47	+0.1
4,988,270	-		GFF4988	0.47	-1.9
4,988,274	+		GFF4988	0.48	-0.9
4,988,281	-		GFF4988	0.49	+0.8
4,988,282	-		GFF4988	0.49	+0.1
4,988,290	-		GFF4988	0.50	+0.5
4,988,291	+		GFF4988	0.50	+0.4
4,988,296	+		GFF4988	0.51	+0.9
4,988,296	+		GFF4988	0.51	+0.2
4,988,304	-		GFF4988	0.52	+0.5
4,988,304	-		GFF4988	0.52	+0.9
4,988,305	+		GFF4988	0.52	+0.8
4,988,314	-		GFF4988	0.53	+0.5
4,988,337	+		GFF4988	0.56	+0.5
4,988,337	+		GFF4988	0.56	+0.4
4,988,337	+		GFF4988	0.56	-0.2
4,988,337	+		GFF4988	0.56	-1.0
4,988,337	+		GFF4988	0.56	+0.8
4,988,337	+		GFF4988	0.56	-0.6
4,988,337	+		GFF4988	0.56	-0.8
4,988,337	+		GFF4988	0.56	-0.0
4,988,339	+		GFF4988	0.56	+1.5
4,988,345	-		GFF4988	0.57	+1.8
4,988,345	-		GFF4988	0.57	+0.9
4,988,345	-		GFF4988	0.57	-0.1
4,988,345	-		GFF4988	0.57	+0.9
4,988,345	-		GFF4988	0.57	-0.7
4,988,373	+		GFF4988	0.60	-0.3
4,988,381	-		GFF4988	0.61	-1.0
4,988,402	+		GFF4988	0.64	+0.2
4,988,403	+		GFF4988	0.64	-0.5
4,988,407	+		GFF4988	0.65	-0.9
4,988,407	+		GFF4988	0.65	+1.4
4,988,408	+		GFF4988	0.65	-0.2
4,988,408	+		GFF4988	0.65	+0.2
4,988,411	-		GFF4988	0.65	-2.0
4,988,411	-		GFF4988	0.65	-0.3
4,988,415	-		GFF4988	0.66	-0.8
4,988,416	-		GFF4988	0.66	+0.5
4,988,416	-		GFF4988	0.66	+0.6
4,988,416	-		GFF4988	0.66	+0.2
4,988,416	-		GFF4988	0.66	-0.5
4,988,426	+		GFF4988	0.67	-2.1
4,988,426	+		GFF4988	0.67	-1.5
4,988,444	-		GFF4988	0.69	-0.0
4,988,452	+		GFF4988	0.70	-0.2
4,988,452	+		GFF4988	0.70	+0.5
4,988,452	+		GFF4988	0.70	+0.3
4,988,452	+		GFF4988	0.70	+0.5
4,988,452	+		GFF4988	0.70	+0.2
4,988,454	+		GFF4988	0.70	-0.0
4,988,460	-		GFF4988	0.71	+0.2
4,988,460	-		GFF4988	0.71	-0.7
4,988,460	-		GFF4988	0.71	-0.9
4,988,460	-		GFF4988	0.71	+1.0
4,988,460	-		GFF4988	0.71	+1.5
4,988,460	-		GFF4988	0.71	-0.4
4,988,460	-		GFF4988	0.71	+0.4
4,988,472	+		GFF4988	0.73	-0.3
4,988,499	-		GFF4988	0.76	+1.0
4,988,502	-		GFF4988	0.76	+1.7
4,988,509	+		GFF4988	0.77	+0.1
4,988,509	+		GFF4988	0.77	+0.1
4,988,509	+		GFF4988	0.77	-0.2
4,988,516	+		GFF4988	0.78	+0.1
4,988,517	-		GFF4988	0.78	+0.9
4,988,517	-		GFF4988	0.78	-0.7
4,988,517	-		GFF4988	0.78	+0.5
4,988,517	-		GFF4988	0.78	+0.6
4,988,517	-		GFF4988	0.78	+0.3
4,988,517	-		GFF4988	0.78	+1.0
4,988,517	-		GFF4988	0.78	+0.7
4,988,529	+		GFF4988	0.80	+1.1
4,988,533	-		GFF4988	0.80	+0.2
4,988,534	-		GFF4988	0.80	+0.1
4,988,537	-		GFF4988	0.81	-0.3
4,988,539	-		GFF4988	0.81	+0.2
4,988,548	+		GFF4988	0.82	+0.5
4,988,548	+		GFF4988	0.82	+0.2
4,988,548	+		GFF4988	0.82	+1.4
4,988,553	+		GFF4988	0.83	-0.3
4,988,553	+		GFF4988	0.83	+1.7
4,988,554	-		GFF4988	0.83	+0.6
4,988,554	-		GFF4988	0.83	+1.0
4,988,556	-		GFF4988	0.83	-0.2
4,988,556	-		GFF4988	0.83	-0.0
4,988,559	+		GFF4988	0.84	-1.8
4,988,561	-		GFF4988	0.84	+0.5
4,988,561	-		GFF4988	0.84	-0.5
4,988,561	-		GFF4988	0.84	+0.3
4,988,580	+		GFF4988	0.86	+1.9
4,988,618	-				+0.4
4,988,620	+				+0.6
4,988,641	+				-0.7
4,988,649	-				+1.0
4,988,679	-				-0.2
4,988,753	+				-0.3
4,988,753	+				+1.3
4,988,761	-				+0.4
4,988,761	-				+0.7
4,988,761	-				+0.5
4,988,761	-				-1.6
4,988,761	-				+0.9
4,988,771	+				-0.2
4,988,847	-		GFF4989	0.14	+0.5
4,988,873	-		GFF4989	0.17	+0.2
4,988,880	+		GFF4989	0.17	+0.7
4,988,887	+		GFF4989	0.18	+1.2
4,988,890	-		GFF4989	0.18	-0.0
4,988,890	-		GFF4989	0.18	-0.8
4,988,892	+		GFF4989	0.18	-0.6
4,988,895	+		GFF4989	0.19	+1.1
4,988,895	-		GFF4989	0.19	-0.2
4,989,028	-		GFF4989	0.31	-0.5
4,989,040	+		GFF4989	0.32	+0.2
4,989,045	+		GFF4989	0.32	+1.1
4,989,046	+		GFF4989	0.32	-1.0
4,989,053	-		GFF4989	0.33	+0.0
4,989,053	-		GFF4989	0.33	+0.5
4,989,053	-		GFF4989	0.33	-0.1
4,989,053	-		GFF4989	0.33	-0.5
4,989,053	-		GFF4989	0.33	+0.2
4,989,054	-		GFF4989	0.33	+1.3
4,989,054	-		GFF4989	0.33	+2.0
4,989,054	-		GFF4989	0.33	+0.4
4,989,054	-		GFF4989	0.33	+1.3
4,989,061	-		GFF4989	0.34	+0.1
4,989,063	+		GFF4989	0.34	-0.6
4,989,063	+		GFF4989	0.34	-0.5
4,989,063	+		GFF4989	0.34	+0.6
4,989,063	+		GFF4989	0.34	-2.2
4,989,071	-		GFF4989	0.34	+1.1
4,989,071	-		GFF4989	0.34	-0.8
4,989,071	-		GFF4989	0.34	+0.6
4,989,071	-		GFF4989	0.34	-0.6
4,989,071	-		GFF4989	0.34	+0.4
4,989,074	+		GFF4989	0.35	-1.6
4,989,074	+		GFF4989	0.35	-0.1
4,989,082	-		GFF4989	0.35	+0.9
4,989,099	-		GFF4989	0.37	-0.6
4,989,108	-		GFF4989	0.38	-0.7
4,989,109	-		GFF4989	0.38	-0.5
4,989,139	-		GFF4989	0.40	+0.4
4,989,144	-		GFF4989	0.41	+0.8
4,989,155	-		GFF4989	0.42	+0.3
4,989,163	-		GFF4989	0.43	-0.7
4,989,186	-		GFF4989	0.45	+0.2
4,989,197	-		GFF4989	0.46	-1.3
4,989,197	-		GFF4989	0.46	+1.3
4,989,197	-		GFF4989	0.46	-0.0
4,989,240	-		GFF4989	0.50	-1.8
4,989,293	-		GFF4989	0.54	-1.6
4,989,333	-		GFF4989	0.58	+0.1
4,989,335	-		GFF4989	0.58	+0.1
4,989,336	+		GFF4989	0.58	-1.0
4,989,336	+		GFF4989	0.58	-0.2
4,989,336	+		GFF4989	0.58	+1.1
4,989,336	+		GFF4989	0.58	-0.2
4,989,336	+		GFF4989	0.58	+1.1
4,989,344	-		GFF4989	0.59	-0.8
4,989,344	-		GFF4989	0.59	-0.1
4,989,344	-		GFF4989	0.59	+0.1
4,989,344	-		GFF4989	0.59	+0.4
4,989,344	-		GFF4989	0.59	-1.0
4,989,346	+		GFF4989	0.59	+0.4
4,989,346	+		GFF4989	0.59	-0.4
4,989,354	-		GFF4989	0.60	-0.0
4,989,354	-		GFF4989	0.60	+1.1
4,989,354	-		GFF4989	0.60	+1.1
4,989,361	-		GFF4989	0.60	+0.1
4,989,366	+		GFF4989	0.61	-0.2
4,989,375	-		GFF4989	0.62	-0.5
4,989,387	+		GFF4989	0.63	+0.1
4,989,412	+		GFF4989	0.65	+0.2
4,989,442	+		GFF4989	0.68	+0.8
4,989,455	-		GFF4989	0.69	+0.6
4,989,469	-		GFF4989	0.70	+0.5
4,989,500	+		GFF4989	0.73	+0.7
4,989,507	-		GFF4989	0.73	-0.8
4,989,534	-		GFF4989	0.76	-0.7
4,989,625	-		GFF4989	0.84	+1.0
4,989,625	-		GFF4989	0.84	+1.1
4,989,640	-		GFF4989	0.85	+0.6
4,989,654	+		GFF4989	0.87	-0.7
4,989,657	-		GFF4989	0.87	+0.8
4,989,657	-		GFF4989	0.87	+1.4
4,989,667	-		GFF4989	0.88	+0.5
4,989,679	+		GFF4989	0.89	+2.0