Strain Fitness in Sphingobium sp. HT1-2 around GFF4984

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,984,574	+		GFF4983	0.73	-0.0
4,984,580	+		GFF4983	0.74	+0.9
4,984,590	+		GFF4983	0.74	+0.6
4,984,657	+		GFF4983	0.76	+0.7
4,984,666	-		GFF4983	0.77	+0.2
4,984,678	-		GFF4983	0.77	+1.6
4,984,679	+		GFF4983	0.77	-1.8
4,984,683	-		GFF4983	0.77	-1.1
4,984,683	-		GFF4983	0.77	+0.5
4,984,716	+		GFF4983	0.78	-0.1
4,984,735	+		GFF4983	0.79	-1.9
4,984,735	+		GFF4983	0.79	+0.5
4,984,735	+		GFF4983	0.79	-0.3
4,984,738	-		GFF4983	0.79	-0.1
4,984,743	-		GFF4983	0.79	+0.7
4,984,743	-		GFF4983	0.79	+0.4
4,984,743	-		GFF4983	0.79	+0.8
4,984,766	+		GFF4983	0.80	-0.6
4,984,769	-		GFF4983	0.80	+0.5
4,984,795	-		GFF4983	0.81	+0.6
4,984,808	+		GFF4983	0.82	-0.7
4,984,809	-		GFF4983	0.82	-0.0
4,984,814	-		GFF4983	0.82	-0.2
4,984,860	-		GFF4983	0.83	-0.1
4,984,867	-		GFF4983	0.84	+0.3
4,984,875	-		GFF4983	0.84	+0.7
4,984,879	+		GFF4983	0.84	-0.1
4,984,887	-		GFF4983	0.84	+1.6
4,984,941	+		GFF4983	0.86	-0.6
4,985,010	+		GFF4983	0.89	+1.0
4,985,015	+		GFF4983	0.89	+1.1
4,985,018	+		GFF4983	0.89	-0.6
4,985,018	-		GFF4983	0.89	-0.0
4,985,028	-		GFF4983	0.89	+1.3
4,985,032	+		GFF4983	0.90	+0.8
4,985,032	+		GFF4983	0.90	+0.6
4,985,032	+		GFF4983	0.90	-0.8
4,985,032	+		GFF4983	0.90	+1.2
4,985,040	-		GFF4983	0.90	+1.6
4,985,061	+				+0.7
4,985,069	-				-1.6
4,985,069	-				+0.8
4,985,069	-				+0.5
4,985,069	-				+0.1
4,985,074	-				+0.4
4,985,086	-				-0.6
4,985,103	+				+0.9
4,985,111	+				+2.0
4,985,118	-				+1.2
4,985,166	-				-2.2
4,985,182	-				+0.4
4,985,182	-				+0.4
4,985,197	+				-0.0
4,985,197	+				-2.0
4,985,197	+				+0.9
4,985,212	-				+0.8
4,985,241	+				+0.7
4,985,247	-				-0.1
4,985,248	-				+0.2
4,985,250	+				+0.1
4,985,250	+				-1.3
4,985,262	-				+0.1
4,985,275	+				+0.7
4,985,277	-				+1.4
4,985,283	-				-0.0
4,985,319	-				+0.8
4,985,329	+				-0.2
4,985,329	+				-0.7
4,985,347	+				+1.4
4,985,347	+				-0.2
4,985,360	-				+0.1
4,985,377	+				-2.3
4,985,378	+				+1.1
4,985,385	+				-0.3
4,985,386	-				+0.9
4,985,386	-				-0.2
4,985,386	-				-1.0
4,985,387	+				+0.2
4,985,387	+				+1.6
4,985,393	-				+1.4
4,985,395	-				-0.2
4,985,415	+				-0.2
4,985,431	+				+0.2
4,985,432	-				+0.8
4,985,434	-				+0.5
4,985,453	-				+1.2
4,985,544	+				+0.8
4,985,544	+				+0.1
4,985,552	-				-1.3
4,985,552	-				-1.0
4,985,552	-				+0.3
4,985,600	+				+0.3
4,985,605	+				-0.8
4,985,608	-				+0.4
4,985,634	+		GFF4984	0.11	+0.3
4,985,634	+		GFF4984	0.11	+0.1
4,985,642	-		GFF4984	0.12	-0.3
4,985,657	+		GFF4984	0.15	+1.2
4,985,676	+		GFF4984	0.18	-0.9
4,985,676	+		GFF4984	0.18	+0.1
4,985,676	+		GFF4984	0.18	+0.8
4,985,676	+		GFF4984	0.18	-0.5
4,985,676	+		GFF4984	0.18	-0.2
4,985,683	+		GFF4984	0.19	+0.5
4,985,684	-		GFF4984	0.20	-0.5
4,985,684	-		GFF4984	0.20	-0.9
4,985,730	+		GFF4984	0.28	+0.6
4,985,730	+		GFF4984	0.28	-0.1
4,985,738	-		GFF4984	0.29	+1.0
4,985,738	-		GFF4984	0.29	+0.1
4,985,738	-		GFF4984	0.29	-0.1
4,985,789	+		GFF4984	0.38	+1.4
4,985,795	-		GFF4984	0.39	+0.2
4,985,801	-		GFF4984	0.40	-0.2
4,985,830	+		GFF4984	0.45	+1.2
4,985,837	+		GFF4984	0.47	+0.4
4,985,838	-		GFF4984	0.47	+1.0
4,985,846	+		GFF4984	0.48	-1.8
4,985,868	+		GFF4984	0.52	-0.8
4,985,868	+		GFF4984	0.52	+0.3
4,985,868	+		GFF4984	0.52	+0.5
4,985,876	-		GFF4984	0.53	+0.4
4,985,876	-		GFF4984	0.53	-0.0
4,985,878	+		GFF4984	0.54	+1.1
4,985,929	+		GFF4984	0.63	+0.0
4,985,931	+		GFF4984	0.63	-0.3
4,985,954	+		GFF4984	0.67	+0.7
4,985,975	-		GFF4984	0.71	-0.8
4,986,047	+		GFF4984	0.84	+1.1
4,986,056	-		GFF4984	0.85	-0.0
4,986,112	+				-1.2
4,986,120	-				-0.8
4,986,163	-				+0.8
4,986,164	+				+1.4
4,986,172	-				-0.6
4,986,176	+				+1.1
4,986,226	-				+0.3
4,986,269	+				+0.6
4,986,293	-				-0.3
4,986,310	+				+0.3
4,986,320	+				+0.5
4,986,329	+				-0.3
4,986,337	-				+1.0
4,986,337	-				+0.1
4,986,337	-				+0.6
4,986,363	+				+1.1
4,986,363	+				+0.0
4,986,371	-				+0.7
4,986,400	+				+0.8
4,986,468	+				+0.5
4,986,469	-				+0.6
4,986,470	+				+1.7
4,986,476	-				-1.5
4,986,486	-				+0.2
4,986,497	+				+1.4
4,986,510	+				+0.1
4,986,518	-				-0.9
4,986,534	+				+0.1
4,986,581	+		GFF4985	0.11	+0.3
4,986,582	-		GFF4985	0.11	-0.4
4,986,624	+		GFF4985	0.17	+0.7
4,986,680	-		GFF4985	0.26	+2.0
4,986,682	-		GFF4985	0.26	+1.4
4,986,688	+		GFF4985	0.27	-1.0
4,986,688	+		GFF4985	0.27	+0.2
4,986,692	-		GFF4985	0.28	-0.8
4,986,696	-		GFF4985	0.29	-2.3
4,986,723	+		GFF4985	0.33	-0.3
4,986,734	+		GFF4985	0.34	+1.4
4,986,758	+		GFF4985	0.38	-1.7
4,986,764	+		GFF4985	0.39	+0.3
4,986,769	+		GFF4985	0.40	+0.1
4,986,773	-		GFF4985	0.40	+1.2
4,986,776	+		GFF4985	0.41	-0.4
4,986,794	-		GFF4985	0.44	-1.5
4,986,813	+		GFF4985	0.47	-0.3
4,986,813	+		GFF4985	0.47	+0.6
4,986,813	+		GFF4985	0.47	+1.0
4,986,813	+		GFF4985	0.47	-0.2
4,986,821	-		GFF4985	0.48	+0.7
4,986,826	-		GFF4985	0.49	+0.3
4,986,840	+		GFF4985	0.51	-0.6
4,986,856	-		GFF4985	0.53	+0.2
4,986,881	-		GFF4985	0.57	-0.3
4,986,892	+		GFF4985	0.59	+1.3
4,986,900	-		GFF4985	0.60	-0.6
4,986,900	-		GFF4985	0.60	-2.1
4,986,930	-		GFF4985	0.65	+1.0
4,986,930	-		GFF4985	0.65	-1.6
4,986,932	+		GFF4985	0.65	+0.0
4,986,932	+		GFF4985	0.65	+0.8
4,986,990	+		GFF4985	0.74	-0.7
4,986,990	-		GFF4985	0.74	-0.2
4,986,992	-		GFF4985	0.75	-0.7
4,986,995	-		GFF4985	0.75	+0.1
4,986,999	-		GFF4985	0.76	+0.3
4,987,000	-		GFF4985	0.76	-0.7
4,987,008	-		GFF4985	0.77	+0.2
4,987,008	-		GFF4985	0.77	-0.7
4,987,008	-		GFF4985	0.77	+1.2
4,987,010	+		GFF4985	0.77	-0.3
4,987,010	+		GFF4985	0.77	-0.3
4,987,010	+		GFF4985	0.77	-0.1
4,987,010	+		GFF4985	0.77	+1.7
4,987,010	+		GFF4985	0.77	+0.0
4,987,010	-		GFF4985	0.77	-0.9
4,987,013	-		GFF4985	0.78	-2.4
4,987,018	-		GFF4985	0.79	+1.2
4,987,018	-		GFF4985	0.79	+0.6
4,987,018	-		GFF4985	0.79	+0.9
4,987,030	+		GFF4985	0.81	+0.8
4,987,034	-		GFF4985	0.81	+0.8
4,987,056	+		GFF4985	0.85	-0.8
4,987,068	-		GFF4985	0.86	+0.0
4,987,074	-		GFF4985	0.87	-0.5
4,987,081	+		GFF4985	0.88	-1.0
4,987,096	+				+0.4
4,987,096	+				-0.0
4,987,104	-				+0.9
4,987,105	+				+0.5
4,987,106	+				-0.3
4,987,106	-				+0.1
4,987,106	-				+0.4
4,987,106	-				+1.1
4,987,106	-				+0.6
4,987,106	-				-0.8
4,987,115	+				-1.0
4,987,118	-				+0.4
4,987,123	-				+0.2
4,987,123	-				-0.3
4,987,123	-				-1.9
4,987,134	+				+0.8