Strain Fitness in Sphingobium sp. HT1-2 around GFF4938

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,929,110	+				+0.3
4,929,118	-				-1.0
4,929,118	-				+0.0
4,929,128	+				-0.7
4,929,139	+				-0.6
4,929,142	-				+0.2
4,929,144	+				+0.2
4,929,152	+				-0.7
4,929,152	-				+0.7
4,929,152	-				-0.5
4,929,152	-				-1.4
4,929,162	+				+0.9
4,929,162	+				-0.7
4,929,162	+				-0.1
4,929,162	+				-1.1
4,929,162	+				-0.2
4,929,162	+				+0.3
4,929,167	+				-0.2
4,929,170	-				+0.9
4,929,170	-				-0.0
4,929,170	-				-0.2
4,929,170	-				+0.2
4,929,170	-				-1.6
4,929,170	-				-1.1
4,929,170	-				-1.1
4,929,172	+				+0.6
4,929,172	+				-0.0
4,929,175	-				-0.4
4,929,180	-				-0.3
4,929,184	+				+0.8
4,929,188	+				-1.7
4,929,193	+				-0.3
4,929,196	-				+1.0
4,929,196	-				+0.5
4,929,196	-				-3.1
4,929,196	-				+0.7
4,929,218	-				-2.4
4,929,240	+				+0.5
4,929,259	-				-3.2
4,929,264	-				-0.2
4,929,285	+				+0.2
4,929,285	+				+0.3
4,929,293	-				+0.3
4,929,297	-				-2.7
4,929,304	+				-1.9
4,929,307	+				-0.7
4,929,307	+				-0.9
4,929,315	-				-0.2
4,929,325	+				+0.3
4,929,325	+				-0.6
4,929,325	+				-0.4
4,929,331	-				+0.5
4,929,333	-				-0.6
4,929,335	+				-0.9
4,929,335	+				-1.3
4,929,335	+				-0.3
4,929,381	+		GFF4937	0.15	-2.2
4,929,387	+		GFF4937	0.16	-0.2
4,929,387	+		GFF4937	0.16	-1.3
4,929,387	+		GFF4937	0.16	-3.2
4,929,387	+		GFF4937	0.16	+0.2
4,929,387	+		GFF4937	0.16	+0.3
4,929,387	+		GFF4937	0.16	-0.8
4,929,387	+		GFF4937	0.16	-1.7
4,929,387	+		GFF4937	0.16	-0.2
4,929,387	+		GFF4937	0.16	+0.4
4,929,387	+		GFF4937	0.16	-0.2
4,929,387	+		GFF4937	0.16	-2.2
4,929,387	+		GFF4937	0.16	+0.8
4,929,387	+		GFF4937	0.16	-1.7
4,929,387	-		GFF4937	0.16	-0.2
4,929,395	-		GFF4937	0.17	-1.6
4,929,395	-		GFF4937	0.17	-0.7
4,929,395	-		GFF4937	0.17	+0.2
4,929,395	-		GFF4937	0.17	+0.7
4,929,395	-		GFF4937	0.17	-2.4
4,929,395	-		GFF4937	0.17	+0.4
4,929,395	-		GFF4937	0.17	-1.7
4,929,395	-		GFF4937	0.17	-0.9
4,929,395	-		GFF4937	0.17	-1.9
4,929,395	-		GFF4937	0.17	-1.2
4,929,395	-		GFF4937	0.17	-2.1
4,929,395	-		GFF4937	0.17	-0.7
4,929,395	-		GFF4937	0.17	-0.5
4,929,395	-		GFF4937	0.17	-0.6
4,929,395	-		GFF4937	0.17	+0.2
4,929,395	-		GFF4937	0.17	-0.4
4,929,395	-		GFF4937	0.17	-0.3
4,929,395	-		GFF4937	0.17	-1.6
4,929,395	-		GFF4937	0.17	-1.2
4,929,395	-		GFF4937	0.17	+0.6
4,929,395	-		GFF4937	0.17	-2.1
4,929,422	-		GFF4937	0.20	-2.9
4,929,455	+		GFF4937	0.25	-1.4
4,929,455	+		GFF4937	0.25	-1.4
4,929,459	-		GFF4937	0.25	-0.9
4,929,461	+		GFF4937	0.26	-0.6
4,929,463	-		GFF4937	0.26	-3.4
4,929,480	-		GFF4937	0.28	-1.2
4,929,487	+		GFF4937	0.29	-0.7
4,929,506	+		GFF4937	0.32	-0.6
4,929,507	-		GFF4937	0.32	-0.4
4,929,514	-		GFF4937	0.33	+0.0
4,929,538	-		GFF4937	0.36	-0.4
4,929,554	-		GFF4937	0.38	+0.1
4,929,554	-		GFF4937	0.38	+0.0
4,929,574	+		GFF4937	0.41	+0.1
4,929,577	-		GFF4937	0.41	+0.1
4,929,668	+		GFF4937	0.54	-1.1
4,929,672	+		GFF4937	0.54	-1.9
4,929,676	-		GFF4937	0.55	-1.2
4,929,687	+		GFF4937	0.56	+0.1
4,929,699	-		GFF4937	0.58	-1.2
4,929,704	+		GFF4937	0.59	+0.3
4,929,704	+		GFF4937	0.59	-1.9
4,929,704	+		GFF4937	0.59	+1.3
4,929,726	+		GFF4937	0.62	-0.5
4,929,726	+		GFF4937	0.62	+0.7
4,929,733	-		GFF4937	0.63	+0.1
4,929,733	-		GFF4937	0.63	-0.2
4,929,734	-		GFF4937	0.63	-1.2
4,929,735	+		GFF4937	0.63	+0.1
4,929,736	+		GFF4937	0.63	-0.3
4,929,736	+		GFF4937	0.63	-2.6
4,929,736	+		GFF4937	0.63	-0.5
4,929,736	+		GFF4937	0.63	-1.0
4,929,736	+		GFF4937	0.63	+0.6
4,929,743	+		GFF4937	0.64	+0.8
4,929,743	-		GFF4937	0.64	+0.5
4,929,744	-		GFF4937	0.64	-2.6
4,929,744	-		GFF4937	0.64	-0.4
4,929,744	-		GFF4937	0.64	-0.5
4,929,744	-		GFF4937	0.64	-1.1
4,929,744	-		GFF4937	0.64	-1.6
4,929,744	-		GFF4937	0.64	-1.7
4,929,744	-		GFF4937	0.64	-1.3
4,929,744	-		GFF4937	0.64	+0.7
4,929,744	-		GFF4937	0.64	-1.6
4,929,744	-		GFF4937	0.64	-0.6
4,929,751	-		GFF4937	0.65	-0.2
4,929,769	-		GFF4937	0.67	-1.1
4,929,782	-		GFF4937	0.69	-0.9
4,929,785	+		GFF4937	0.70	-1.3
4,929,793	-		GFF4937	0.71	+0.1
4,929,803	-		GFF4937	0.72	-0.4
4,929,840	+		GFF4937	0.77	-2.7
4,929,873	+		GFF4937	0.82	+0.6
4,929,873	+		GFF4937	0.82	+0.1
4,929,881	-		GFF4937	0.83	-0.2
4,929,881	-		GFF4937	0.83	-0.2
4,929,893	+		GFF4937	0.84	-0.6
4,929,893	+		GFF4937	0.84	+0.5
4,929,893	+		GFF4937	0.84	-1.6
4,929,894	-		GFF4937	0.84	-1.8
4,929,895	-		GFF4937	0.85	-0.1
4,929,897	+		GFF4937	0.85	-1.4
4,929,901	-		GFF4937	0.85	+0.6
4,929,901	-		GFF4937	0.85	+0.1
4,929,901	-		GFF4937	0.85	+0.5
4,929,901	-		GFF4937	0.85	+0.2
4,929,903	+		GFF4937	0.86	+0.2
4,929,905	+		GFF4937	0.86	-1.0
4,929,905	-		GFF4937	0.86	+0.8
4,929,911	-		GFF4937	0.87	-1.9
4,929,911	-		GFF4937	0.87	-0.6
4,929,911	-		GFF4937	0.87	+0.2
4,929,913	-		GFF4937	0.87	-0.6
4,929,913	-		GFF4937	0.87	-0.4
4,929,918	-		GFF4937	0.88	+1.0
4,929,964	+				+0.2
4,929,972	-				-2.4
4,929,998	+				-0.8
4,929,998	+				-0.7
4,929,998	+				+0.2
4,929,998	+				-2.5
4,930,006	-				-0.6
4,930,008	+				+0.1
4,930,008	+				+0.3
4,930,008	+				+0.6
4,930,008	+				+0.8
4,930,016	-				-1.0
4,930,016	-				+0.6
4,930,016	-				-0.2
4,930,016	-				-0.6
4,930,016	-				-1.7
4,930,021	-				-0.5
4,930,032	+				-2.3
4,930,045	-				-1.6
4,930,051	+				-1.1
4,930,054	+				-2.5
4,930,064	-				+0.4
4,930,067	+				-0.1
4,930,067	+				-2.2
4,930,077	+				-0.8
4,930,077	+				-1.4
4,930,085	-				-3.1
4,930,100	-				+0.2
4,930,157	+				-0.9
4,930,191	+		GFF4938	0.10	-0.5
4,930,191	+		GFF4938	0.10	-1.7
4,930,198	+		GFF4938	0.11	-0.2
4,930,199	-		GFF4938	0.11	-1.0
4,930,199	-		GFF4938	0.11	-0.0
4,930,200	-		GFF4938	0.12	-0.3
4,930,249	+		GFF4938	0.18	+0.1
4,930,270	+		GFF4938	0.21	+0.5
4,930,270	+		GFF4938	0.21	-2.5
4,930,270	+		GFF4938	0.21	-0.9
4,930,278	-		GFF4938	0.22	+0.7
4,930,278	-		GFF4938	0.22	-1.9
4,930,308	-		GFF4938	0.25	+0.4
4,930,313	-		GFF4938	0.26	-0.8
4,930,328	+		GFF4938	0.28	-0.2
4,930,333	-		GFF4938	0.29	-0.5
4,930,335	+		GFF4938	0.29	+0.6
4,930,350	-		GFF4938	0.31	-0.5
4,930,370	+		GFF4938	0.33	-0.9
4,930,389	+		GFF4938	0.36	-0.6
4,930,389	+		GFF4938	0.36	-0.2
4,930,394	-		GFF4938	0.36	+1.5
4,930,397	-		GFF4938	0.37	+0.3
4,930,424	-		GFF4938	0.40	-0.7
4,930,424	-		GFF4938	0.40	-1.9
4,930,447	+		GFF4938	0.43	-2.1
4,930,453	-		GFF4938	0.44	-0.3
4,930,453	-		GFF4938	0.44	+0.2
4,930,455	+		GFF4938	0.44	-2.2
4,930,455	+		GFF4938	0.44	-1.9
4,930,456	+		GFF4938	0.44	-1.9
4,930,458	-		GFF4938	0.45	-0.1
4,930,464	-		GFF4938	0.45	-2.2
4,930,511	+		GFF4938	0.51	+0.6
4,930,524	+		GFF4938	0.53	+0.3
4,930,527	-		GFF4938	0.53	-0.1
4,930,537	-		GFF4938	0.55	-0.7
4,930,539	+		GFF4938	0.55	-1.5
4,930,578	+		GFF4938	0.60	-1.9
4,930,578	+		GFF4938	0.60	-0.7
4,930,578	+		GFF4938	0.60	+0.5
4,930,586	-		GFF4938	0.61	+0.4
4,930,586	-		GFF4938	0.61	-1.1
4,930,586	-		GFF4938	0.61	+0.1
4,930,592	-		GFF4938	0.62	+0.1
4,930,600	-		GFF4938	0.63	-0.5
4,930,603	+		GFF4938	0.63	-1.2
4,930,611	-		GFF4938	0.64	+0.4
4,930,621	+		GFF4938	0.65	-1.8
4,930,621	+		GFF4938	0.65	-0.5
4,930,621	+		GFF4938	0.65	-0.7
4,930,621	+		GFF4938	0.65	+0.5
4,930,624	-		GFF4938	0.66	-0.6
4,930,629	-		GFF4938	0.66	+0.3
4,930,629	-		GFF4938	0.66	-0.9
4,930,629	-		GFF4938	0.66	-0.9
4,930,629	-		GFF4938	0.66	+0.3
4,930,629	-		GFF4938	0.66	-0.6
4,930,683	+		GFF4938	0.73	-1.5
4,930,694	+		GFF4938	0.75	-0.5
4,930,694	+		GFF4938	0.75	-0.2
4,930,702	-		GFF4938	0.76	-0.3
4,930,710	-		GFF4938	0.77	-1.7
4,930,710	-		GFF4938	0.77	-0.5
4,930,713	+		GFF4938	0.77	+0.8
4,930,713	+		GFF4938	0.77	-0.6
4,930,713	+		GFF4938	0.77	+0.1
4,930,713	-		GFF4938	0.77	-0.6
4,930,718	+		GFF4938	0.78	-0.4
4,930,726	-		GFF4938	0.79	-0.0
4,930,763	+		GFF4938	0.84	+0.4
4,930,782	-		GFF4938	0.86	-0.3
4,930,790	-		GFF4938	0.87	-0.3
4,930,793	+		GFF4938	0.87	+0.8
4,930,806	-		GFF4938	0.89	-0.6
4,930,810	-		GFF4938	0.90	-0.2
4,930,823	-				-0.2
4,930,837	-				+1.0
4,930,857	+				-0.1
4,930,865	-				-0.9
4,930,870	-				-1.2
4,930,870	-				+1.3
4,930,875	+				-1.6
4,930,875	+				-2.0
4,930,875	+				-2.1
4,930,875	+				-1.5
4,930,875	+				-2.0
4,930,875	+				-0.5
4,930,875	+				+0.1
4,930,875	+				+0.1
4,930,875	+				-1.7
4,930,875	+				+0.2
4,930,875	+				-1.7
4,930,878	-				+0.4
4,930,880	+				+0.3
4,930,883	-				+0.3
4,930,883	-				+1.0
4,930,883	-				-2.3
4,930,883	-				-0.5
4,930,883	-				-0.5
4,930,883	-				-0.6
4,930,883	-				-2.2
4,930,886	-				-0.9
4,930,891	+				-0.7
4,930,893	-				-0.5
4,930,893	-				+1.3
4,930,899	-				-1.7
4,930,919	+		GFF4939	0.20	-2.1
4,930,920	+		GFF4939	0.21	-1.2
4,930,920	+		GFF4939	0.21	-1.6
4,930,921	+		GFF4939	0.21	+0.5
4,930,928	-		GFF4939	0.26	+0.1
4,930,928	-		GFF4939	0.26	+0.8
4,930,929	-		GFF4939	0.26	+0.4
4,930,939	+		GFF4939	0.33	-0.3
4,930,962	+		GFF4939	0.47	+0.4
4,930,967	+		GFF4939	0.51	-1.3
4,930,967	+		GFF4939	0.51	-0.5
4,930,967	+		GFF4939	0.51	-1.2
4,930,967	+		GFF4939	0.51	-0.5
4,930,967	+		GFF4939	0.51	-0.5
4,930,967	+		GFF4939	0.51	-0.7
4,930,967	+		GFF4939	0.51	-0.0
4,930,967	+		GFF4939	0.51	-0.8
4,930,975	-		GFF4939	0.56	-1.7
4,930,975	-		GFF4939	0.56	-0.2
4,930,999	+		GFF4939	0.71	+0.3
4,931,005	-		GFF4939	0.75	+0.7
4,931,007	-		GFF4939	0.76	-0.5
4,931,016	+		GFF4939	0.82	-1.7
4,931,026	+		GFF4939	0.88	-1.4
4,931,026	+		GFF4939	0.88	-1.1
4,931,036	+				-2.3
4,931,036	-				-2.7
4,931,051	-				-0.3
4,931,070	-				+0.9
4,931,073	+				+0.6
4,931,073	+				-0.4
4,931,107	+		GFF4940	0.22	-2.1
4,931,107	+		GFF4940	0.22	-0.1
4,931,107	+		GFF4940	0.22	-2.3
4,931,107	+		GFF4940	0.22	+1.0
4,931,107	+		GFF4940	0.22	-0.7
4,931,107	+		GFF4940	0.22	-2.1
4,931,107	+		GFF4940	0.22	+0.5
4,931,107	+		GFF4940	0.22	-1.7
4,931,107	+		GFF4940	0.22	+0.3
4,931,110	-		GFF4940	0.24	-1.1
4,931,110	-		GFF4940	0.24	-0.6
4,931,112	+		GFF4940	0.25	-0.5
4,931,115	-		GFF4940	0.28	-2.0
4,931,115	-		GFF4940	0.28	-0.3
4,931,115	-		GFF4940	0.28	+0.4
4,931,115	-		GFF4940	0.28	-3.0
4,931,115	-		GFF4940	0.28	-2.1
4,931,115	-		GFF4940	0.28	-2.8
4,931,115	-		GFF4940	0.28	-2.1
4,931,115	-		GFF4940	0.28	-1.0
4,931,115	-		GFF4940	0.28	-0.9
4,931,115	-		GFF4940	0.28	-1.5
4,931,115	-		GFF4940	0.28	-0.2
4,931,115	-		GFF4940	0.28	+1.3
4,931,115	-		GFF4940	0.28	+1.0
4,931,120	-		GFF4940	0.31	+0.2
4,931,122	+		GFF4940	0.33	-0.6
4,931,125	-		GFF4940	0.35	-1.9
4,931,132	-		GFF4940	0.40	-0.7
4,931,199	-		GFF4940	0.88	-0.9
4,931,409	+				-0.6
4,931,418	-				-0.0
4,931,428	-				+0.8
4,931,461	-				-0.2
4,931,461	-				-1.7
4,931,461	-				-0.1
4,931,497	+				-1.9
4,931,519	-				-1.1
4,931,542	-		GFF4941	0.10	-2.5
4,931,542	-		GFF4941	0.10	-0.8
4,931,620	+		GFF4941	0.18	-0.9
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4,931,630	+		GFF4941	0.19	-0.7
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4,931,721	-		GFF4941	0.28	-1.9
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