Strain Fitness in Sphingobium sp. HT1-2 around GFF4933

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,922,864	-		GFF4931	0.49	-1.4
4,922,877	+		GFF4931	0.55	-0.7
4,922,911	+		GFF4931	0.69	-1.6
4,922,914	-		GFF4931	0.71	-1.3
4,922,921	+		GFF4931	0.74	-1.2
4,922,975	+				+0.1
4,922,977	-				-1.0
4,922,989	+				+0.1
4,922,989	+				+0.1
4,923,033	+				-1.1
4,923,035	-				-0.4
4,923,043	-				-0.2
4,923,043	-				-0.1
4,923,077	+				+0.3
4,923,085	-				-2.1
4,923,089	+		GFF4932	0.10	-0.3
4,923,169	-		GFF4932	0.20	+1.0
4,923,229	+		GFF4932	0.27	+0.3
4,923,231	+		GFF4932	0.27	+1.0
4,923,231	+		GFF4932	0.27	+0.4
4,923,239	-		GFF4932	0.28	+0.1
4,923,239	-		GFF4932	0.28	-0.7
4,923,244	+		GFF4932	0.29	+0.5
4,923,249	+		GFF4932	0.29	-0.1
4,923,249	+		GFF4932	0.29	-0.1
4,923,249	+		GFF4932	0.29	-1.3
4,923,250	+		GFF4932	0.29	-0.6
4,923,250	+		GFF4932	0.29	-0.8
4,923,255	+		GFF4932	0.30	+0.7
4,923,257	-		GFF4932	0.30	-0.0
4,923,257	-		GFF4932	0.30	-0.2
4,923,257	-		GFF4932	0.30	-2.1
4,923,288	+		GFF4932	0.34	-1.2
4,923,295	+		GFF4932	0.35	-1.3
4,923,326	-		GFF4932	0.39	+0.0
4,923,327	-		GFF4932	0.39	+0.6
4,923,330	+		GFF4932	0.39	-1.9
4,923,330	+		GFF4932	0.39	+0.9
4,923,342	-		GFF4932	0.41	-0.3
4,923,376	-		GFF4932	0.45	-0.6
4,923,434	-		GFF4932	0.52	-0.8
4,923,455	+		GFF4932	0.54	-0.8
4,923,484	+		GFF4932	0.58	-0.7
4,923,485	+		GFF4932	0.58	-0.4
4,923,492	-		GFF4932	0.59	+0.3
4,923,502	+		GFF4932	0.60	-0.1
4,923,513	+		GFF4932	0.61	-1.4
4,923,525	+		GFF4932	0.62	+0.9
4,923,525	+		GFF4932	0.62	-0.3
4,923,525	+		GFF4932	0.62	+0.9
4,923,525	+		GFF4932	0.62	+0.7
4,923,526	-		GFF4932	0.63	-0.7
4,923,531	-		GFF4932	0.63	-1.2
4,923,533	+		GFF4932	0.63	-0.7
4,923,533	-		GFF4932	0.63	+0.4
4,923,533	-		GFF4932	0.63	+0.2
4,923,566	+		GFF4932	0.67	+0.6
4,923,584	-		GFF4932	0.70	-1.7
4,923,587	+		GFF4932	0.70	-0.7
4,923,587	+		GFF4932	0.70	-1.3
4,923,589	-		GFF4932	0.70	-0.1
4,923,609	+		GFF4932	0.73	-1.1
4,923,703	+		GFF4932	0.84	-0.1
4,923,705	+		GFF4932	0.84	-0.1
4,923,710	+		GFF4932	0.85	-0.7
4,923,805	+				-0.9
4,923,831	+				+0.6
4,923,831	+				-0.9
4,923,831	+				-0.4
4,923,831	+				-2.1
4,923,839	-				-0.8
4,923,929	-				+0.7
4,923,929	-				+0.6
4,923,934	-				+0.1
4,924,006	+				-0.4
4,924,016	+				+0.6
4,924,030	+				-0.3
4,924,030	+				+0.9
4,924,031	-				+0.1
4,924,035	+				-1.1
4,924,035	+				-0.2
4,924,043	-				-1.1
4,924,076	+		GFF4933	0.11	-0.9
4,924,079	-		GFF4933	0.11	+0.4
4,924,133	+		GFF4933	0.13	-0.2
4,924,133	+		GFF4933	0.13	-0.5
4,924,153	-		GFF4933	0.14	-0.7
4,924,153	-		GFF4933	0.14	+0.6
4,924,165	+		GFF4933	0.15	-0.1
4,924,196	-		GFF4933	0.16	-0.3
4,924,212	+		GFF4933	0.17	-0.6
4,924,230	-		GFF4933	0.18	-0.7
4,924,240	+		GFF4933	0.18	+0.2
4,924,243	-		GFF4933	0.18	-1.4
4,924,243	-		GFF4933	0.18	-0.3
4,924,253	-		GFF4933	0.19	+0.3
4,924,253	-		GFF4933	0.19	-0.9
4,924,258	+		GFF4933	0.19	-0.9
4,924,263	+		GFF4933	0.19	+1.0
4,924,263	+		GFF4933	0.19	+0.0
4,924,263	+		GFF4933	0.19	-1.0
4,924,263	+		GFF4933	0.19	-0.4
4,924,263	+		GFF4933	0.19	+0.1
4,924,271	-		GFF4933	0.19	+0.1
4,924,271	-		GFF4933	0.19	-2.8
4,924,271	-		GFF4933	0.19	+0.1
4,924,278	+		GFF4933	0.20	+0.2
4,924,278	+		GFF4933	0.20	+0.6
4,924,278	+		GFF4933	0.20	+0.3
4,924,286	-		GFF4933	0.20	-1.4
4,924,286	-		GFF4933	0.20	-0.9
4,924,294	+		GFF4933	0.20	-0.7
4,924,353	+		GFF4933	0.23	-0.5
4,924,376	+		GFF4933	0.24	-0.5
4,924,376	+		GFF4933	0.24	+1.5
4,924,376	+		GFF4933	0.24	+0.6
4,924,376	+		GFF4933	0.24	-0.6
4,924,376	+		GFF4933	0.24	+0.2
4,924,376	+		GFF4933	0.24	-0.3
4,924,376	+		GFF4933	0.24	-1.4
4,924,376	+		GFF4933	0.24	+0.2
4,924,376	+		GFF4933	0.24	-0.9
4,924,376	+		GFF4933	0.24	+0.4
4,924,376	+		GFF4933	0.24	-0.6
4,924,376	+		GFF4933	0.24	-0.3
4,924,384	-		GFF4933	0.24	-0.3
4,924,384	-		GFF4933	0.24	-0.1
4,924,384	-		GFF4933	0.24	-0.4
4,924,384	-		GFF4933	0.24	-0.7
4,924,384	-		GFF4933	0.24	-0.8
4,924,384	-		GFF4933	0.24	-1.1
4,924,384	-		GFF4933	0.24	-0.3
4,924,384	-		GFF4933	0.24	-1.0
4,924,407	-		GFF4933	0.26	+0.9
4,924,469	-		GFF4933	0.28	-0.7
4,924,485	+		GFF4933	0.29	+0.9
4,924,485	+		GFF4933	0.29	-0.1
4,924,485	+		GFF4933	0.29	-0.6
4,924,485	+		GFF4933	0.29	-0.8
4,924,493	-		GFF4933	0.29	-0.5
4,924,493	-		GFF4933	0.29	-1.7
4,924,493	-		GFF4933	0.29	-0.6
4,924,493	-		GFF4933	0.29	-0.3
4,924,493	-		GFF4933	0.29	+0.3
4,924,503	+		GFF4933	0.30	+0.2
4,924,511	-		GFF4933	0.30	+0.9
4,924,511	-		GFF4933	0.30	-0.3
4,924,538	-		GFF4933	0.31	+0.0
4,924,547	+		GFF4933	0.32	-0.6
4,924,547	+		GFF4933	0.32	-0.8
4,924,547	+		GFF4933	0.32	+0.3
4,924,555	-		GFF4933	0.32	+0.2
4,924,642	-		GFF4933	0.36	+0.5
4,924,642	-		GFF4933	0.36	+1.2
4,924,660	+		GFF4933	0.37	-1.7
4,924,660	+		GFF4933	0.37	+0.4
4,924,686	+		GFF4933	0.38	-0.9
4,924,686	+		GFF4933	0.38	+0.4
4,924,722	+		GFF4933	0.40	-0.2
4,924,722	+		GFF4933	0.40	-0.4
4,924,722	+		GFF4933	0.40	-0.6
4,924,729	-		GFF4933	0.40	-1.2
4,924,730	-		GFF4933	0.40	-0.2
4,924,730	-		GFF4933	0.40	+0.1
4,924,738	+		GFF4933	0.40	-0.3
4,924,738	+		GFF4933	0.40	-0.3
4,924,738	+		GFF4933	0.40	+0.0
4,924,745	+		GFF4933	0.41	+0.1
4,924,746	-		GFF4933	0.41	+1.2
4,924,746	-		GFF4933	0.41	+0.0
4,924,746	-		GFF4933	0.41	-1.3
4,924,751	-		GFF4933	0.41	-1.6
4,924,784	+		GFF4933	0.43	-0.7
4,924,810	-		GFF4933	0.44	-0.2
4,924,837	-		GFF4933	0.45	+0.6
4,924,847	+		GFF4933	0.45	+1.1
4,924,852	+		GFF4933	0.46	-2.0
4,924,869	+		GFF4933	0.46	-1.2
4,924,874	+		GFF4933	0.47	-0.6
4,924,874	+		GFF4933	0.47	-2.0
4,924,882	-		GFF4933	0.47	-0.7
4,924,900	+		GFF4933	0.48	-2.1
4,924,908	-		GFF4933	0.48	-0.4
4,924,908	-		GFF4933	0.48	-0.5
4,924,910	+		GFF4933	0.48	-0.2
4,924,994	+		GFF4933	0.52	-0.5
4,924,994	-		GFF4933	0.52	-1.6
4,925,007	+		GFF4933	0.53	-1.8
4,925,009	+		GFF4933	0.53	-1.5
4,925,015	-		GFF4933	0.53	-0.8
4,925,015	-		GFF4933	0.53	-0.5
4,925,017	-		GFF4933	0.53	-0.8
4,925,056	+		GFF4933	0.55	-2.0
4,925,064	-		GFF4933	0.55	-0.7
4,925,064	-		GFF4933	0.55	-1.8
4,925,064	-		GFF4933	0.55	-0.4
4,925,066	+		GFF4933	0.55	-0.4
4,925,074	-		GFF4933	0.56	-0.6
4,925,074	-		GFF4933	0.56	-2.3
4,925,074	-		GFF4933	0.56	-2.3
4,925,074	-		GFF4933	0.56	+0.2
4,925,083	+		GFF4933	0.56	-1.1
4,925,091	+		GFF4933	0.56	+0.4
4,925,100	+		GFF4933	0.57	+0.2
4,925,144	+		GFF4933	0.59	-0.1
4,925,187	+		GFF4933	0.61	-1.5
4,925,195	+		GFF4933	0.61	+0.2
4,925,203	-		GFF4933	0.62	-1.0
4,925,208	-		GFF4933	0.62	-0.6
4,925,213	+		GFF4933	0.62	+1.5
4,925,247	+		GFF4933	0.64	-0.6
4,925,255	-		GFF4933	0.64	-0.9
4,925,304	+		GFF4933	0.66	+1.9
4,925,304	+		GFF4933	0.66	-0.6
4,925,304	+		GFF4933	0.66	-1.4
4,925,304	+		GFF4933	0.66	+1.3
4,925,312	-		GFF4933	0.66	-0.9
4,925,328	+		GFF4933	0.67	-0.5
4,925,336	-		GFF4933	0.68	+1.1
4,925,359	+		GFF4933	0.69	-0.3
4,925,371	-		GFF4933	0.69	+1.0
4,925,374	+		GFF4933	0.69	-0.9
4,925,374	+		GFF4933	0.69	-0.2
4,925,374	+		GFF4933	0.69	-0.8
4,925,382	-		GFF4933	0.70	+0.7
4,925,382	-		GFF4933	0.70	-0.0
4,925,382	-		GFF4933	0.70	-2.1
4,925,382	-		GFF4933	0.70	-0.7
4,925,382	-		GFF4933	0.70	-0.3
4,925,382	-		GFF4933	0.70	+0.2
4,925,382	-		GFF4933	0.70	-0.8
4,925,382	-		GFF4933	0.70	+1.2
4,925,389	+		GFF4933	0.70	-0.3
4,925,389	+		GFF4933	0.70	-0.7
4,925,389	+		GFF4933	0.70	-3.4
4,925,392	-		GFF4933	0.70	-1.0
4,925,397	-		GFF4933	0.70	+0.2
4,925,397	-		GFF4933	0.70	-3.0
4,925,397	-		GFF4933	0.70	+0.2
4,925,402	-		GFF4933	0.71	-1.5
4,925,423	-		GFF4933	0.71	-0.4
4,925,424	-		GFF4933	0.72	-1.6
4,925,433	+		GFF4933	0.72	-0.8
4,925,440	-		GFF4933	0.72	-0.5
4,925,440	-		GFF4933	0.72	-0.7
4,925,447	-		GFF4933	0.73	-0.9
4,925,452	-		GFF4933	0.73	-3.0
4,925,462	+		GFF4933	0.73	-0.3
4,925,468	+		GFF4933	0.73	+0.4
4,925,492	+		GFF4933	0.75	-0.1
4,925,492	+		GFF4933	0.75	-0.4
4,925,492	+		GFF4933	0.75	-1.0
4,925,493	+		GFF4933	0.75	-1.3
4,925,493	+		GFF4933	0.75	-1.1
4,925,500	-		GFF4933	0.75	-0.2
4,925,500	-		GFF4933	0.75	+0.3
4,925,501	-		GFF4933	0.75	-0.8
4,925,501	-		GFF4933	0.75	-1.2
4,925,501	-		GFF4933	0.75	+0.2
4,925,501	-		GFF4933	0.75	+0.2
4,925,508	-		GFF4933	0.75	-1.1
4,925,528	-		GFF4933	0.76	-0.9
4,925,533	+		GFF4933	0.76	+0.5
4,925,539	-		GFF4933	0.77	+0.1
4,925,565	-		GFF4933	0.78	-0.3
4,925,599	+		GFF4933	0.79	-0.7
4,925,605	+		GFF4933	0.80	-1.0
4,925,607	-		GFF4933	0.80	+1.1
4,925,607	-		GFF4933	0.80	-2.3
4,925,607	-		GFF4933	0.80	-1.8
4,925,675	+		GFF4933	0.83	-2.7
4,925,675	+		GFF4933	0.83	-2.2
4,925,677	+		GFF4933	0.83	+0.3
4,925,729	+		GFF4933	0.85	+0.9
4,925,737	-		GFF4933	0.86	+0.6
4,925,741	-		GFF4933	0.86	-1.4
4,925,746	-		GFF4933	0.86	-0.9
4,925,746	-		GFF4933	0.86	-0.3
4,925,830	+		GFF4933	0.90	-1.2
4,925,846	+				-0.7
4,925,859	-				+0.7
4,925,912	+				-0.5
4,925,918	+				-0.5
4,925,920	-				+0.3
4,925,925	+				-1.6
4,925,926	+				-0.1
4,925,947	-				-1.4
4,925,947	-				+0.3
4,925,970	-				+0.3
4,925,970	-				-1.0
4,925,974	-				+0.6
4,925,997	+				-1.4
4,926,005	-				-1.1
4,926,005	-				-1.6
4,926,005	-				-1.8
4,926,023	+				+0.3
4,926,052	+				-0.6
4,926,055	-				-0.4
4,926,110	-				-1.1
4,926,136	+				-1.1
4,926,141	+				-0.8
4,926,149	-		GFF4934	0.11	+0.6
4,926,174	+		GFF4934	0.14	-0.2
4,926,177	-		GFF4934	0.14	-3.3
4,926,182	-		GFF4934	0.15	+0.8
4,926,182	-		GFF4934	0.15	-1.3
4,926,182	-		GFF4934	0.15	+0.3
4,926,182	-		GFF4934	0.15	-0.2
4,926,182	-		GFF4934	0.15	-0.7
4,926,182	-		GFF4934	0.15	-2.2
4,926,182	-		GFF4934	0.15	+0.4
4,926,182	-		GFF4934	0.15	+0.3
4,926,182	-		GFF4934	0.15	-2.0
4,926,184	+		GFF4934	0.15	-0.3
4,926,184	+		GFF4934	0.15	-2.5
4,926,184	+		GFF4934	0.15	-0.9
4,926,192	-		GFF4934	0.16	-0.8
4,926,192	-		GFF4934	0.16	-1.0
4,926,206	+		GFF4934	0.18	+0.1
4,926,213	+		GFF4934	0.18	-1.4
4,926,226	-		GFF4934	0.20	-0.6
4,926,228	+		GFF4934	0.20	-1.3
4,926,236	-		GFF4934	0.21	-0.8
4,926,236	-		GFF4934	0.21	+0.7
4,926,246	+		GFF4934	0.23	-0.1
4,926,256	-		GFF4934	0.24	-0.5
4,926,265	+		GFF4934	0.25	+0.2
4,926,265	+		GFF4934	0.25	+0.3
4,926,267	+		GFF4934	0.25	-3.0
4,926,273	-		GFF4934	0.26	+0.6
4,926,273	-		GFF4934	0.26	+1.1
4,926,273	-		GFF4934	0.26	-0.3
4,926,283	-		GFF4934	0.27	-0.5
4,926,292	+		GFF4934	0.28	+0.1
4,926,294	-		GFF4934	0.29	-0.6
4,926,294	-		GFF4934	0.29	-0.9
4,926,313	-		GFF4934	0.31	+0.6
4,926,447	-		GFF4934	0.47	-0.4
4,926,496	+		GFF4934	0.54	-0.2
4,926,526	+		GFF4934	0.57	-2.5
4,926,553	+		GFF4934	0.61	-1.8
4,926,554	-		GFF4934	0.61	+0.9
4,926,572	+		GFF4934	0.63	+0.2
4,926,576	+		GFF4934	0.63	+0.2
4,926,615	+		GFF4934	0.68	-1.3
4,926,617	+		GFF4934	0.69	+0.1
4,926,622	+		GFF4934	0.69	+0.3
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4,926,689	+		GFF4934	0.77	-1.2
4,926,693	-		GFF4934	0.78	-2.5
4,926,709	+		GFF4934	0.80	-0.3
4,926,711	+		GFF4934	0.80	+0.1
4,926,711	+		GFF4934	0.80	-2.1
4,926,714	-		GFF4934	0.81	-0.1
4,926,775	+		GFF4934	0.88	+2.6
4,926,794	+				-1.7
4,926,807	-				-1.0
4,926,812	-				+1.6
4,926,812	-				+0.4
4,926,818	+				+0.3
4,926,826	-				+0.5
4,926,882	+				+1.1
4,926,890	-				-0.3
4,926,898	-				-0.6
4,926,898	-				-2.8
4,926,980	+				+1.6
4,926,997	+				-0.7
4,926,999	+				-0.3
4,927,026	+				-3.2
4,927,046	+				+0.3