Strain Fitness in Sphingobium sp. HT1-2 around GFF4927

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,917,970	+				-1.4
4,918,022	-				+0.5
4,918,022	-				-1.7
4,918,030	+				-0.1
4,918,043	-				-1.0
4,918,043	-				+0.4
4,918,043	-				-0.7
4,918,053	-				+0.0
4,918,060	-		GFF4926	0.10	+0.4
4,918,127	+		GFF4926	0.17	-0.5
4,918,163	+		GFF4926	0.21	-0.7
4,918,163	+		GFF4926	0.21	+0.7
4,918,163	+		GFF4926	0.21	-0.8
4,918,169	+		GFF4926	0.21	-2.2
4,918,171	-		GFF4926	0.22	-1.4
4,918,171	-		GFF4926	0.22	+0.1
4,918,171	-		GFF4926	0.22	+1.5
4,918,173	+		GFF4926	0.22	-0.2
4,918,179	+		GFF4926	0.22	-1.5
4,918,187	-		GFF4926	0.23	-1.2
4,918,188	-		GFF4926	0.23	+0.4
4,918,189	+		GFF4926	0.23	-1.7
4,918,189	+		GFF4926	0.23	-0.9
4,918,189	+		GFF4926	0.23	-0.8
4,918,189	+		GFF4926	0.23	+0.3
4,918,189	+		GFF4926	0.23	-0.3
4,918,189	+		GFF4926	0.23	-1.9
4,918,189	+		GFF4926	0.23	-0.4
4,918,189	+		GFF4926	0.23	+0.3
4,918,189	+		GFF4926	0.23	+1.0
4,918,189	+		GFF4926	0.23	-0.5
4,918,189	+		GFF4926	0.23	-1.6
4,918,189	+		GFF4926	0.23	-0.1
4,918,197	-		GFF4926	0.24	-0.7
4,918,197	-		GFF4926	0.24	+0.5
4,918,197	-		GFF4926	0.24	-1.2
4,918,197	-		GFF4926	0.24	+0.5
4,918,197	-		GFF4926	0.24	-0.9
4,918,197	-		GFF4926	0.24	-0.6
4,918,197	-		GFF4926	0.24	-1.6
4,918,197	-		GFF4926	0.24	+0.4
4,918,197	-		GFF4926	0.24	+0.2
4,918,210	-		GFF4926	0.26	-0.1
4,918,210	-		GFF4926	0.26	+1.0
4,918,215	-		GFF4926	0.26	-2.2
4,918,218	+		GFF4926	0.26	-0.5
4,918,218	+		GFF4926	0.26	-0.5
4,918,222	+		GFF4926	0.27	-1.7
4,918,225	-		GFF4926	0.27	+0.3
4,918,230	-		GFF4926	0.28	-1.5
4,918,241	-		GFF4926	0.29	-0.1
4,918,250	+		GFF4926	0.30	-0.7
4,918,255	+		GFF4926	0.30	+0.8
4,918,263	-		GFF4926	0.31	+0.5
4,918,265	+		GFF4926	0.31	-0.8
4,918,274	+		GFF4926	0.32	-0.5
4,918,282	-		GFF4926	0.33	-1.7
4,918,282	-		GFF4926	0.33	-2.1
4,918,282	-		GFF4926	0.33	-0.4
4,918,282	-		GFF4926	0.33	-0.3
4,918,308	+		GFF4926	0.36	-0.2
4,918,309	-		GFF4926	0.36	+0.4
4,918,311	+		GFF4926	0.36	-1.5
4,918,313	+		GFF4926	0.36	-0.5
4,918,313	+		GFF4926	0.36	-1.7
4,918,313	+		GFF4926	0.36	-0.6
4,918,319	-		GFF4926	0.37	-0.8
4,918,319	-		GFF4926	0.37	-3.4
4,918,321	-		GFF4926	0.37	-1.4
4,918,326	+		GFF4926	0.38	-0.2
4,918,326	+		GFF4926	0.38	+0.3
4,918,326	-		GFF4926	0.38	-0.6
4,918,329	-		GFF4926	0.38	-1.0
4,918,351	-		GFF4926	0.40	+0.0
4,918,351	-		GFF4926	0.40	-0.9
4,918,356	+		GFF4926	0.41	+0.2
4,918,366	+		GFF4926	0.42	+1.8
4,918,374	-		GFF4926	0.43	+0.4
4,918,374	-		GFF4926	0.43	+0.6
4,918,374	-		GFF4926	0.43	-0.9
4,918,374	-		GFF4926	0.43	-2.0
4,918,374	-		GFF4926	0.43	-2.0
4,918,374	-		GFF4926	0.43	-0.5
4,918,387	+		GFF4926	0.44	+0.8
4,918,393	+		GFF4926	0.44	+0.0
4,918,393	-		GFF4926	0.44	-0.0
4,918,393	-		GFF4926	0.44	+0.3
4,918,404	+		GFF4926	0.46	-0.4
4,918,422	-		GFF4926	0.47	-0.5
4,918,435	-		GFF4926	0.49	-0.4
4,918,469	+		GFF4926	0.52	-1.4
4,918,490	-		GFF4926	0.54	-0.4
4,918,505	+		GFF4926	0.56	-0.4
4,918,505	+		GFF4926	0.56	-1.2
4,918,513	-		GFF4926	0.57	+0.6
4,918,515	+		GFF4926	0.57	-0.2
4,918,523	+		GFF4926	0.58	-2.1
4,918,546	-		GFF4926	0.60	-0.6
4,918,548	-		GFF4926	0.60	-2.1
4,918,579	+		GFF4926	0.64	+0.6
4,918,579	+		GFF4926	0.64	-0.5
4,918,579	+		GFF4926	0.64	-3.4
4,918,584	+		GFF4926	0.64	-2.9
4,918,584	+		GFF4926	0.64	-1.0
4,918,587	-		GFF4926	0.64	-1.4
4,918,587	-		GFF4926	0.64	+0.0
4,918,589	+		GFF4926	0.65	-0.3
4,918,592	-		GFF4926	0.65	-1.7
4,918,592	-		GFF4926	0.65	-1.2
4,918,592	-		GFF4926	0.65	-0.2
4,918,595	-		GFF4926	0.65	-0.2
4,918,597	-		GFF4926	0.66	-1.9
4,918,597	-		GFF4926	0.66	-0.6
4,918,610	-		GFF4926	0.67	-0.0
4,918,611	+		GFF4926	0.67	-0.8
4,918,611	+		GFF4926	0.67	-0.0
4,918,611	+		GFF4926	0.67	-0.5
4,918,611	+		GFF4926	0.67	-1.2
4,918,611	+		GFF4926	0.67	+0.1
4,918,613	+		GFF4926	0.67	+0.0
4,918,619	-		GFF4926	0.68	+0.0
4,918,619	-		GFF4926	0.68	-0.8
4,918,621	+		GFF4926	0.68	+0.3
4,918,621	+		GFF4926	0.68	+0.8
4,918,621	-		GFF4926	0.68	-2.6
4,918,629	-		GFF4926	0.69	-1.2
4,918,700	+		GFF4926	0.76	+0.1
4,918,708	-		GFF4926	0.77	-1.1
4,918,713	-		GFF4926	0.78	+0.3
4,918,721	-		GFF4926	0.78	-1.0
4,918,740	-		GFF4926	0.80	-1.9
4,918,785	-		GFF4926	0.85	+0.2
4,918,826	+		GFF4926	0.89	+0.8
4,918,826	+		GFF4926	0.89	-1.2
4,918,855	-				+0.0
4,918,855	-				+0.1
4,918,862	+				-0.6
4,918,870	-				+0.5
4,918,888	-				-0.9
4,918,897	+				-0.6
4,918,897	+				-1.9
4,918,905	-				+0.0
4,918,944	+				-0.5
4,918,946	+				-0.8
4,918,952	-				-1.6
4,918,965	+				-2.0
4,918,965	+				-1.6
4,918,965	+				-0.6
4,918,969	-				-0.7
4,918,973	-				-0.4
4,918,973	-				-2.2
4,918,973	-				-0.3
4,918,973	-				-0.3
4,918,973	-				-0.1
4,919,006	+				-0.9
4,919,019	+		GFF4927	0.10	-0.1
4,919,079	+		GFF4927	0.18	-2.3
4,919,079	-		GFF4927	0.18	-2.0
4,919,085	-		GFF4927	0.19	-1.9
4,919,094	+		GFF4927	0.20	-0.7
4,919,178	-		GFF4927	0.31	+0.4
4,919,186	+		GFF4927	0.32	+0.2
4,919,190	-		GFF4927	0.33	-1.9
4,919,207	+		GFF4927	0.35	-1.8
4,919,251	+		GFF4927	0.41	-0.0
4,919,251	+		GFF4927	0.41	-1.6
4,919,259	-		GFF4927	0.42	+0.0
4,919,275	+		GFF4927	0.44	-2.5
4,919,285	+		GFF4927	0.46	-0.5
4,919,285	+		GFF4927	0.46	-0.5
4,919,293	-		GFF4927	0.47	-1.2
4,919,323	+		GFF4927	0.51	-0.7
4,919,340	+		GFF4927	0.53	-0.9
4,919,348	-		GFF4927	0.54	+0.6
4,919,358	+		GFF4927	0.55	-0.6
4,919,363	+		GFF4927	0.56	-0.7
4,919,376	+		GFF4927	0.58	+0.4
4,919,376	+		GFF4927	0.58	+0.0
4,919,376	+		GFF4927	0.58	-0.3
4,919,384	-		GFF4927	0.59	-0.4
4,919,396	+		GFF4927	0.61	-0.7
4,919,396	+		GFF4927	0.61	+0.1
4,919,396	+		GFF4927	0.61	-0.3
4,919,400	-		GFF4927	0.61	-0.1
4,919,404	-		GFF4927	0.62	+0.8
4,919,406	+		GFF4927	0.62	-0.5
4,919,449	+		GFF4927	0.68	-1.1
4,919,449	+		GFF4927	0.68	-0.3
4,919,449	+		GFF4927	0.68	-1.0
4,919,449	+		GFF4927	0.68	-2.1
4,919,449	+		GFF4927	0.68	+0.7
4,919,457	-		GFF4927	0.69	-0.1
4,919,457	-		GFF4927	0.69	-0.4
4,919,474	+		GFF4927	0.71	-1.6
4,919,477	-		GFF4927	0.71	-0.0
4,919,506	-		GFF4927	0.75	-1.1
4,919,511	+		GFF4927	0.76	-0.5
4,919,512	+		GFF4927	0.76	-0.5
4,919,519	-		GFF4927	0.77	+0.7
4,919,519	-		GFF4927	0.77	-0.1
4,919,526	+		GFF4927	0.78	-1.9
4,919,534	-		GFF4927	0.79	-0.8
4,919,534	-		GFF4927	0.79	-0.4
4,919,545	+		GFF4927	0.80	+0.0
4,919,553	-		GFF4927	0.82	+0.6
4,919,555	-		GFF4927	0.82	+0.4
4,919,567	+		GFF4927	0.83	-0.1
4,919,570	-		GFF4927	0.84	+1.0
4,919,579	+		GFF4927	0.85	-0.7
4,919,597	-		GFF4927	0.87	-0.7
4,919,661	+				-1.6
4,919,680	+				-1.6
4,919,680	+				-0.6
4,919,694	+				-0.4
4,919,702	-				-1.7
4,919,708	-				-1.0
4,919,719	-				+0.9
4,919,750	-				-2.1
4,919,753	+				-0.7
4,919,757	+				+0.4
4,919,758	+				-1.8
4,919,766	-				+0.1
4,919,766	-				-0.9
4,919,766	-				-0.3
4,919,766	-				-1.3
4,919,766	-				-1.1
4,919,814	-		GFF4928	0.10	-0.0
4,919,828	+		GFF4928	0.11	-1.9
4,919,840	-		GFF4928	0.12	-1.5
4,919,876	+		GFF4928	0.15	-1.7
4,919,916	+		GFF4928	0.19	-1.6
4,919,929	-		GFF4928	0.20	-1.3
4,919,931	+		GFF4928	0.20	-1.0
4,919,950	+		GFF4928	0.22	-1.1
4,919,951	+		GFF4928	0.22	-1.7
4,919,958	-		GFF4928	0.22	+0.1
4,919,959	-		GFF4928	0.23	-0.7
4,919,966	-		GFF4928	0.23	-2.6
4,919,967	-		GFF4928	0.23	-1.4
4,919,985	-		GFF4928	0.25	-1.2
4,920,011	+		GFF4928	0.27	-0.7
4,920,017	+		GFF4928	0.28	+0.3
4,920,025	-		GFF4928	0.28	-0.6
4,920,036	+		GFF4928	0.29	-0.2
4,920,039	-		GFF4928	0.29	-0.9
4,920,041	+		GFF4928	0.30	-2.0
4,920,044	-		GFF4928	0.30	+0.0
4,920,049	-		GFF4928	0.30	-0.2
4,920,049	-		GFF4928	0.30	-0.2
4,920,064	+		GFF4928	0.32	+0.1
4,920,064	+		GFF4928	0.32	+0.1
4,920,077	-		GFF4928	0.33	+0.4
4,920,078	+		GFF4928	0.33	+1.3
4,920,084	+		GFF4928	0.33	+1.3
4,920,086	-		GFF4928	0.33	-1.1
4,920,088	+		GFF4928	0.34	-0.1
4,920,088	+		GFF4928	0.34	+0.7
4,920,088	+		GFF4928	0.34	-1.0
4,920,088	+		GFF4928	0.34	-0.2
4,920,088	+		GFF4928	0.34	-0.1
4,920,088	+		GFF4928	0.34	-2.6
4,920,096	-		GFF4928	0.34	-0.0
4,920,096	-		GFF4928	0.34	-1.5
4,920,096	-		GFF4928	0.34	+0.1
4,920,120	-		GFF4928	0.36	-0.2
4,920,134	+		GFF4928	0.38	-0.7
4,920,143	+		GFF4928	0.38	-1.4
4,920,143	+		GFF4928	0.38	+0.6
4,920,144	+		GFF4928	0.38	-0.4
4,920,150	+		GFF4928	0.39	-0.1
4,920,152	-		GFF4928	0.39	-0.5
4,920,155	+		GFF4928	0.39	-1.1
4,920,158	-		GFF4928	0.40	+0.1
4,920,165	+		GFF4928	0.40	+0.7
4,920,168	-		GFF4928	0.40	-0.8
4,920,184	+		GFF4928	0.42	+0.6
4,920,186	-		GFF4928	0.42	-0.6
4,920,188	+		GFF4928	0.42	-3.1
4,920,197	-		GFF4928	0.43	-1.1
4,920,208	-		GFF4928	0.44	-1.1
4,920,217	+		GFF4928	0.45	-1.0
4,920,252	+		GFF4928	0.48	-1.1
4,920,252	+		GFF4928	0.48	+0.5
4,920,252	+		GFF4928	0.48	-0.8
4,920,252	+		GFF4928	0.48	+0.3
4,920,252	+		GFF4928	0.48	-1.6
4,920,260	-		GFF4928	0.48	-0.6
4,920,260	-		GFF4928	0.48	-0.5
4,920,269	+		GFF4928	0.49	+0.5
4,920,269	+		GFF4928	0.49	-0.3
4,920,270	-		GFF4928	0.49	-0.2
4,920,277	-		GFF4928	0.50	+0.0
4,920,279	+		GFF4928	0.50	-2.7
4,920,309	+		GFF4928	0.53	-0.3
4,920,309	+		GFF4928	0.53	+0.5
4,920,309	+		GFF4928	0.53	-0.7
4,920,314	+		GFF4928	0.53	+0.6
4,920,317	-		GFF4928	0.53	-0.4
4,920,317	-		GFF4928	0.53	-0.6
4,920,317	-		GFF4928	0.53	-0.9
4,920,317	-		GFF4928	0.53	-0.2
4,920,317	-		GFF4928	0.53	-0.4
4,920,317	-		GFF4928	0.53	-0.6
4,920,328	+		GFF4928	0.54	-2.0
4,920,341	-		GFF4928	0.55	-0.6
4,920,346	+		GFF4928	0.56	-1.4
4,920,346	-		GFF4928	0.56	-1.0
4,920,353	+		GFF4928	0.56	-2.0
4,920,353	+		GFF4928	0.56	-1.2
4,920,353	+		GFF4928	0.56	-2.0
4,920,353	+		GFF4928	0.56	-0.0
4,920,353	+		GFF4928	0.56	-1.2
4,920,353	+		GFF4928	0.56	-0.8
4,920,354	-		GFF4928	0.56	-0.8
4,920,354	-		GFF4928	0.56	-1.2
4,920,361	-		GFF4928	0.57	-2.3
4,920,361	-		GFF4928	0.57	-1.8
4,920,373	-		GFF4928	0.58	-0.8
4,920,391	+		GFF4928	0.60	-1.6
4,920,404	-		GFF4928	0.61	-0.2
4,920,404	-		GFF4928	0.61	-2.7
4,920,404	-		GFF4928	0.61	-0.9
4,920,454	-		GFF4928	0.65	+0.1
4,920,456	+		GFF4928	0.65	+0.3
4,920,456	+		GFF4928	0.65	-0.2
4,920,464	-		GFF4928	0.66	-2.6
4,920,464	-		GFF4928	0.66	-1.3
4,920,464	-		GFF4928	0.66	-1.2
4,920,489	+		GFF4928	0.68	-0.3
4,920,494	+		GFF4928	0.68	-1.0
4,920,502	-		GFF4928	0.69	+0.3
4,920,507	+		GFF4928	0.69	-1.2
4,920,517	-		GFF4928	0.70	-1.2
4,920,519	-		GFF4928	0.71	-0.3
4,920,527	+		GFF4928	0.71	-0.7
4,920,527	+		GFF4928	0.71	-2.3
4,920,528	+		GFF4928	0.71	+0.1
4,920,532	+		GFF4928	0.72	+0.0
4,920,535	-		GFF4928	0.72	-1.6
4,920,540	-		GFF4928	0.72	+0.2
4,920,545	-		GFF4928	0.73	-0.4
4,920,546	+		GFF4928	0.73	-1.3
4,920,554	-		GFF4928	0.74	-0.2
4,920,554	-		GFF4928	0.74	-1.1
4,920,595	-		GFF4928	0.77	-2.6
4,920,595	-		GFF4928	0.77	+1.5
4,920,602	-		GFF4928	0.78	-2.1
4,920,609	+		GFF4928	0.78	-0.0
4,920,617	-		GFF4928	0.79	-1.2
4,920,625	-		GFF4928	0.80	-1.7
4,920,660	+		GFF4928	0.83	-1.3
4,920,660	+		GFF4928	0.83	+0.2
4,920,680	+		GFF4928	0.84	-0.7
4,920,687	+		GFF4928	0.85	-0.6