Strain Fitness in Sphingobium sp. HT1-2 around GFF4924

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,915,035	+		GFF4922	0.65	-0.2
4,915,036	+		GFF4922	0.65	-1.1
4,915,036	-		GFF4922	0.65	+0.5
4,915,044	-		GFF4922	0.66	+0.1
4,915,076	+		GFF4922	0.71	-1.6
4,915,081	+		GFF4922	0.71	-0.9
4,915,081	+		GFF4922	0.71	-1.6
4,915,083	+		GFF4922	0.72	-1.1
4,915,083	+		GFF4922	0.72	-2.2
4,915,084	-		GFF4922	0.72	+1.2
4,915,089	-		GFF4922	0.72	+0.2
4,915,115	+		GFF4922	0.76	-0.2
4,915,115	+		GFF4922	0.76	-1.4
4,915,115	+		GFF4922	0.76	-0.7
4,915,132	+		GFF4922	0.78	-0.2
4,915,135	-		GFF4922	0.78	+0.4
4,915,137	+		GFF4922	0.79	-1.6
4,915,137	+		GFF4922	0.79	-0.8
4,915,151	+		GFF4922	0.81	-0.5
4,915,151	+		GFF4922	0.81	-1.0
4,915,151	+		GFF4922	0.81	-0.4
4,915,151	+		GFF4922	0.81	+0.7
4,915,156	+		GFF4922	0.81	-0.5
4,915,159	-		GFF4922	0.82	-0.4
4,915,159	-		GFF4922	0.82	+0.3
4,915,196	-		GFF4922	0.87	-1.3
4,915,207	+		GFF4922	0.88	-0.2
4,915,214	+		GFF4922	0.89	-0.1
4,915,215	-		GFF4922	0.89	-1.0
4,915,221	+				-0.5
4,915,228	+				-0.1
4,915,237	+				+0.7
4,915,241	-				+0.2
4,915,245	-				+0.5
4,915,310	+				-0.1
4,915,312	-				-2.5
4,915,318	+				+0.9
4,915,421	-		GFF4923	0.14	-2.4
4,915,433	+		GFF4923	0.16	-0.2
4,915,433	-		GFF4923	0.16	-2.1
4,915,451	+		GFF4923	0.19	-1.5
4,915,457	+		GFF4923	0.20	-0.3
4,915,457	+		GFF4923	0.20	-2.2
4,915,458	-		GFF4923	0.20	-0.6
4,915,459	-		GFF4923	0.20	-1.8
4,915,459	-		GFF4923	0.20	-0.7
4,915,459	-		GFF4923	0.20	-0.1
4,915,476	+		GFF4923	0.23	+0.5
4,915,476	+		GFF4923	0.23	+0.0
4,915,484	-		GFF4923	0.24	-1.2
4,915,484	-		GFF4923	0.24	-0.7
4,915,484	-		GFF4923	0.24	+0.1
4,915,533	-		GFF4923	0.32	-1.6
4,915,566	+		GFF4923	0.38	-0.5
4,915,566	+		GFF4923	0.38	-0.0
4,915,566	+		GFF4923	0.38	-2.3
4,915,566	+		GFF4923	0.38	-2.4
4,915,566	+		GFF4923	0.38	-0.4
4,915,566	+		GFF4923	0.38	-0.4
4,915,571	+		GFF4923	0.39	-0.5
4,915,574	-		GFF4923	0.39	-1.0
4,915,574	-		GFF4923	0.39	-1.7
4,915,574	-		GFF4923	0.39	-0.8
4,915,574	-		GFF4923	0.39	+0.5
4,915,574	-		GFF4923	0.39	+0.0
4,915,574	-		GFF4923	0.39	-0.5
4,915,574	-		GFF4923	0.39	-0.6
4,915,574	-		GFF4923	0.39	-1.4
4,915,576	-		GFF4923	0.39	-0.4
4,915,593	+		GFF4923	0.42	-1.3
4,915,596	-		GFF4923	0.43	+0.6
4,915,596	-		GFF4923	0.43	-1.0
4,915,598	+		GFF4923	0.43	+0.5
4,915,598	+		GFF4923	0.43	-0.9
4,915,598	+		GFF4923	0.43	+0.3
4,915,598	+		GFF4923	0.43	-0.2
4,915,598	+		GFF4923	0.43	-2.2
4,915,598	+		GFF4923	0.43	-0.5
4,915,598	+		GFF4923	0.43	+1.2
4,915,598	+		GFF4923	0.43	+0.8
4,915,598	+		GFF4923	0.43	+0.7
4,915,598	+		GFF4923	0.43	-1.7
4,915,601	-		GFF4923	0.43	-1.5
4,915,603	+		GFF4923	0.44	-0.6
4,915,603	+		GFF4923	0.44	-0.3
4,915,603	+		GFF4923	0.44	-1.1
4,915,603	+		GFF4923	0.44	+0.3
4,915,603	+		GFF4923	0.44	-0.9
4,915,606	-		GFF4923	0.44	-0.9
4,915,606	-		GFF4923	0.44	-1.4
4,915,606	-		GFF4923	0.44	-0.0
4,915,606	-		GFF4923	0.44	-1.4
4,915,606	-		GFF4923	0.44	+0.2
4,915,606	-		GFF4923	0.44	-1.1
4,915,611	-		GFF4923	0.45	-0.6
4,915,611	-		GFF4923	0.45	-0.7
4,915,611	-		GFF4923	0.45	-1.6
4,915,613	+		GFF4923	0.45	-0.0
4,915,618	+		GFF4923	0.46	+0.7
4,915,628	+		GFF4923	0.48	+0.5
4,915,661	-		GFF4923	0.53	-1.5
4,915,695	+		GFF4923	0.59	-0.5
4,915,702	+		GFF4923	0.60	+0.3
4,915,723	-		GFF4923	0.63	-2.1
4,915,771	+		GFF4923	0.71	-1.7
4,915,771	+		GFF4923	0.71	-0.1
4,915,771	+		GFF4923	0.71	-0.9
4,915,771	+		GFF4923	0.71	-2.6
4,915,771	+		GFF4923	0.71	-0.8
4,915,779	-		GFF4923	0.72	-0.7
4,915,779	-		GFF4923	0.72	-0.8
4,915,815	+		GFF4923	0.78	-0.9
4,915,815	+		GFF4923	0.78	+0.2
4,915,823	-		GFF4923	0.80	-0.5
4,915,823	-		GFF4923	0.80	-1.6
4,915,823	-		GFF4923	0.80	-0.1
4,915,823	-		GFF4923	0.80	-1.2
4,915,842	+		GFF4923	0.83	-0.9
4,915,842	+		GFF4923	0.83	-1.3
4,915,842	+		GFF4923	0.83	+0.4
4,915,848	+		GFF4923	0.84	+0.8
4,915,848	+		GFF4923	0.84	-1.6
4,915,867	+		GFF4923	0.87	-3.1
4,915,934	-				+0.2
4,916,003	+				-1.9
4,916,005	+				-0.5
4,916,008	-				-0.9
4,916,011	-				+0.5
4,916,011	-				+0.2
4,916,011	-				-0.8
4,916,013	+				-0.2
4,916,013	-				-1.7
4,916,013	-				-0.8
4,916,021	-				-1.8
4,916,021	-				-1.9
4,916,035	+				+0.3
4,916,042	-				+0.7
4,916,043	-				-0.8
4,916,043	-				-1.0
4,916,088	-				-0.1
4,916,101	-				-2.1
4,916,106	+				-2.3
4,916,111	-		GFF4924	0.10	-0.5
4,916,143	+		GFF4924	0.14	-0.5
4,916,143	+		GFF4924	0.14	-0.9
4,916,144	+		GFF4924	0.14	-1.0
4,916,144	+		GFF4924	0.14	-2.6
4,916,160	+		GFF4924	0.16	-1.4
4,916,165	+		GFF4924	0.16	-0.7
4,916,168	-		GFF4924	0.17	+0.1
4,916,168	-		GFF4924	0.17	-1.4
4,916,168	-		GFF4924	0.17	-0.5
4,916,168	-		GFF4924	0.17	-0.3
4,916,204	-		GFF4924	0.21	-0.1
4,916,213	-		GFF4924	0.22	+1.1
4,916,227	+		GFF4924	0.23	-2.0
4,916,233	+		GFF4924	0.24	-1.5
4,916,235	-		GFF4924	0.24	+0.3
4,916,256	-		GFF4924	0.27	-1.0
4,916,258	-		GFF4924	0.27	-1.7
4,916,272	+		GFF4924	0.28	-0.7
4,916,309	+		GFF4924	0.33	-3.3
4,916,309	+		GFF4924	0.33	+1.1
4,916,316	+		GFF4924	0.33	+0.8
4,916,316	+		GFF4924	0.33	-0.2
4,916,317	-		GFF4924	0.33	-0.1
4,916,324	+		GFF4924	0.34	-0.8
4,916,337	-		GFF4924	0.36	-0.5
4,916,355	+		GFF4924	0.38	-0.4
4,916,363	-		GFF4924	0.39	+0.3
4,916,376	-		GFF4924	0.40	-0.4
4,916,378	+		GFF4924	0.40	-0.4
4,916,379	-		GFF4924	0.40	-0.1
4,916,380	+		GFF4924	0.41	-1.6
4,916,380	+		GFF4924	0.41	+0.5
4,916,380	+		GFF4924	0.41	-0.0
4,916,380	+		GFF4924	0.41	+1.1
4,916,409	-		GFF4924	0.44	+1.0
4,916,428	+		GFF4924	0.46	-1.3
4,916,428	-		GFF4924	0.46	-1.1
4,916,428	-		GFF4924	0.46	+1.1
4,916,428	-		GFF4924	0.46	-0.9
4,916,436	+		GFF4924	0.47	-1.6
4,916,470	+		GFF4924	0.51	-0.3
4,916,488	+		GFF4924	0.53	-1.2
4,916,503	+		GFF4924	0.55	-2.2
4,916,503	+		GFF4924	0.55	-0.7
4,916,530	+		GFF4924	0.58	-0.8
4,916,546	+		GFF4924	0.59	-0.4
4,916,546	+		GFF4924	0.59	-1.3
4,916,546	+		GFF4924	0.59	-1.6
4,916,546	+		GFF4924	0.59	+0.6
4,916,546	+		GFF4924	0.59	-3.1
4,916,546	+		GFF4924	0.59	+1.3
4,916,554	-		GFF4924	0.60	-0.6
4,916,554	-		GFF4924	0.60	+0.1
4,916,554	-		GFF4924	0.60	-1.4
4,916,554	-		GFF4924	0.60	+0.9
4,916,554	-		GFF4924	0.60	-1.0
4,916,554	-		GFF4924	0.60	-0.1
4,916,554	-		GFF4924	0.60	-1.4
4,916,554	-		GFF4924	0.60	-0.6
4,916,554	-		GFF4924	0.60	+0.3
4,916,554	-		GFF4924	0.60	-1.0
4,916,562	-		GFF4924	0.61	-0.3
4,916,572	+		GFF4924	0.62	-1.8
4,916,581	-		GFF4924	0.63	-1.2
4,916,589	+		GFF4924	0.64	-0.8
4,916,622	+		GFF4924	0.68	-2.3
4,916,622	+		GFF4924	0.68	-1.2
4,916,622	+		GFF4924	0.68	-0.1
4,916,622	+		GFF4924	0.68	-0.7
4,916,627	+		GFF4924	0.69	-0.3
4,916,627	+		GFF4924	0.69	-0.4
4,916,627	+		GFF4924	0.69	-0.1
4,916,627	+		GFF4924	0.69	+0.4
4,916,630	-		GFF4924	0.69	-2.5
4,916,630	-		GFF4924	0.69	+1.2
4,916,630	-		GFF4924	0.69	+1.1
4,916,630	-		GFF4924	0.69	-0.7
4,916,630	-		GFF4924	0.69	-0.8
4,916,632	+		GFF4924	0.69	-0.9
4,916,635	-		GFF4924	0.70	+0.1
4,916,635	-		GFF4924	0.70	-1.3
4,916,635	-		GFF4924	0.70	+0.3
4,916,635	-		GFF4924	0.70	-1.3
4,916,645	+		GFF4924	0.71	-0.1
4,916,661	+		GFF4924	0.72	+0.7
4,916,661	+		GFF4924	0.72	-1.1
4,916,661	+		GFF4924	0.72	+0.1
4,916,661	+		GFF4924	0.72	-1.4
4,916,661	+		GFF4924	0.72	-1.8
4,916,661	+		GFF4924	0.72	-0.7
4,916,661	+		GFF4924	0.72	-0.3
4,916,661	+		GFF4924	0.72	+0.5
4,916,661	+		GFF4924	0.72	+0.9
4,916,669	-		GFF4924	0.73	-0.9
4,916,669	-		GFF4924	0.73	+0.1
4,916,669	-		GFF4924	0.73	-0.3
4,916,669	-		GFF4924	0.73	-0.3
4,916,669	-		GFF4924	0.73	-1.6
4,916,669	-		GFF4924	0.73	-0.6
4,916,669	-		GFF4924	0.73	-1.4
4,916,669	-		GFF4924	0.73	-0.1
4,916,669	-		GFF4924	0.73	-0.5
4,916,669	-		GFF4924	0.73	+0.6
4,916,669	-		GFF4924	0.73	+0.1
4,916,669	-		GFF4924	0.73	-0.9
4,916,669	-		GFF4924	0.73	-1.3
4,916,669	-		GFF4924	0.73	-0.1
4,916,669	-		GFF4924	0.73	-0.3
4,916,669	-		GFF4924	0.73	-3.2
4,916,693	+		GFF4924	0.76	+0.4
4,916,717	+		GFF4924	0.79	-2.1
4,916,730	+		GFF4924	0.80	-1.1
4,916,734	+		GFF4924	0.81	-1.3
4,916,736	-		GFF4924	0.81	+0.5
4,916,738	-		GFF4924	0.81	-0.1
4,916,738	-		GFF4924	0.81	+0.5
4,916,757	+		GFF4924	0.83	-0.9
4,916,762	+		GFF4924	0.84	-0.6
4,916,768	+		GFF4924	0.85	+0.3
4,916,775	+		GFF4924	0.85	-2.0
4,916,776	+		GFF4924	0.85	-0.9
4,916,776	-		GFF4924	0.85	-0.1
4,916,797	+		GFF4924	0.88	-0.3
4,916,803	-		GFF4924	0.89	-1.5
4,916,807	+		GFF4924	0.89	-1.2
4,916,827	+				-1.9
4,916,832	+				-1.7
4,916,835	-				-0.1
4,916,835	-				+0.4
4,916,840	-				-0.5
4,916,842	+				-0.3
4,916,871	+				-0.8
4,916,879	-				-0.7
4,916,885	-				-0.6
4,916,896	-				-0.0
4,916,906	-				-1.7
4,916,906	-				-1.8
4,916,906	-				-0.5
4,916,908	-				+0.7
4,916,931	+				+0.2
4,916,931	+				-0.6
4,916,934	+				-0.7
4,916,939	-				+0.1
4,916,939	-				+1.0
4,916,942	-				+0.4
4,916,942	-				+0.4
4,916,944	-				-0.7
4,916,952	-				-2.3
4,916,952	-				-0.5
4,916,953	-				+1.0
4,916,992	+				-0.2
4,917,048	+				-1.1
4,917,048	-				-1.3
4,917,075	+		GFF4925	0.13	+1.0
4,917,075	+		GFF4925	0.13	-0.7
4,917,077	+		GFF4925	0.13	-0.3
4,917,083	-		GFF4925	0.13	-0.4
4,917,085	-		GFF4925	0.14	-2.0
4,917,106	+		GFF4925	0.16	-0.4
4,917,106	+		GFF4925	0.16	-2.8
4,917,114	-		GFF4925	0.17	-0.9
4,917,118	-		GFF4925	0.17	+0.3
4,917,139	+		GFF4925	0.19	-0.4
4,917,171	+		GFF4925	0.22	-1.1
4,917,197	-		GFF4925	0.25	-0.4
4,917,204	+		GFF4925	0.25	+0.2
4,917,210	-		GFF4925	0.26	-0.3
4,917,210	-		GFF4925	0.26	-1.3
4,917,210	-		GFF4925	0.26	-1.6
4,917,212	-		GFF4925	0.26	-1.7
4,917,221	+		GFF4925	0.27	-1.7
4,917,227	-		GFF4925	0.28	-0.2
4,917,234	-		GFF4925	0.28	-0.0
4,917,236	+		GFF4925	0.29	-2.4
4,917,236	+		GFF4925	0.29	-1.5
4,917,236	+		GFF4925	0.29	-0.5
4,917,236	+		GFF4925	0.29	-2.5
4,917,236	+		GFF4925	0.29	+0.2
4,917,236	+		GFF4925	0.29	-0.8
4,917,236	+		GFF4925	0.29	+0.5
4,917,236	+		GFF4925	0.29	-0.4
4,917,236	+		GFF4925	0.29	-0.5
4,917,236	+		GFF4925	0.29	-0.9
4,917,244	-		GFF4925	0.29	-1.5
4,917,244	-		GFF4925	0.29	-1.6
4,917,244	-		GFF4925	0.29	-0.3
4,917,244	-		GFF4925	0.29	-0.1
4,917,244	-		GFF4925	0.29	+0.3
4,917,244	-		GFF4925	0.29	-0.2
4,917,244	-		GFF4925	0.29	-0.7
4,917,246	-		GFF4925	0.30	-0.2
4,917,258	-		GFF4925	0.31	-2.0
4,917,267	+		GFF4925	0.32	+0.6
4,917,270	-		GFF4925	0.32	-1.0
4,917,284	+		GFF4925	0.33	+0.2
4,917,285	+		GFF4925	0.34	+1.4
4,917,307	+		GFF4925	0.36	-1.1
4,917,307	+		GFF4925	0.36	-1.4
4,917,307	+		GFF4925	0.36	-2.4
4,917,310	-		GFF4925	0.36	+0.3
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