Strain Fitness in Sphingobium sp. HT1-2 around GFF4845

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,827,714	+		GFF4842	0.45	-0.5
4,827,714	+		GFF4842	0.45	-0.6
4,827,722	-		GFF4842	0.46	+1.5
4,827,722	-		GFF4842	0.46	-0.5
4,827,727	-		GFF4842	0.47	+1.9
4,827,734	+		GFF4842	0.48	-1.6
4,827,742	-		GFF4842	0.49	-1.2
4,827,750	-		GFF4842	0.50	-0.4
4,827,755	+		GFF4842	0.51	+1.7
4,827,770	+		GFF4842	0.53	+0.3
4,827,783	-		GFF4842	0.54	+0.1
4,827,791	-		GFF4842	0.55	+1.0
4,827,801	-		GFF4842	0.57	+0.5
4,827,802	+		GFF4842	0.57	+0.4
4,827,802	+		GFF4842	0.57	+0.1
4,827,807	+		GFF4842	0.58	+0.3
4,827,807	+		GFF4842	0.58	+1.2
4,827,807	+		GFF4842	0.58	-1.9
4,827,807	+		GFF4842	0.58	+0.5
4,827,807	+		GFF4842	0.58	-0.9
4,827,815	-		GFF4842	0.59	-0.1
4,827,830	+		GFF4842	0.61	+0.8
4,827,839	-		GFF4842	0.62	+1.6
4,827,857	-		GFF4842	0.64	+0.6
4,827,862	-		GFF4842	0.65	+1.0
4,827,902	+		GFF4842	0.70	-0.3
4,827,902	+		GFF4842	0.70	-0.5
4,827,944	-		GFF4842	0.76	-0.1
4,827,991	+		GFF4842	0.82	-0.1
4,827,993	-		GFF4842	0.83	-1.0
4,827,996	+		GFF4842	0.83	-0.6
4,827,996	+		GFF4842	0.83	+0.5
4,827,996	+		GFF4842	0.83	-0.4
4,827,998	-		GFF4842	0.83	-0.5
4,828,004	-		GFF4842	0.84	+0.1
4,828,004	-		GFF4842	0.84	+0.5
4,828,004	-		GFF4842	0.84	-2.7
4,828,027	-		GFF4842	0.87	-2.0
4,828,029	-		GFF4842	0.88	-1.5
4,828,046	-		GFF4842	0.90	-0.6
4,828,076	+				+0.5
4,828,085	+				+0.4
4,828,090	+				+0.7
4,828,090	+				-0.8
4,828,098	-				-0.4
4,828,102	+				+0.4
4,828,103	-				-0.0
4,828,135	-				+0.7
4,828,145	-				-0.2
4,828,185	-		GFF4843	0.26	-0.3
4,828,227	+		GFF4843	0.50	-1.0
4,828,227	+		GFF4843	0.50	+1.7
4,828,227	+		GFF4843	0.50	-1.9
4,828,235	-		GFF4843	0.54	+0.8
4,828,235	-		GFF4843	0.54	+0.5
4,828,235	-		GFF4843	0.54	-0.7
4,828,245	-		GFF4843	0.60	+0.7
4,828,252	-		GFF4843	0.64	-0.0
4,828,255	+		GFF4843	0.66	+0.3
4,828,255	+		GFF4843	0.66	+0.4
4,828,263	-		GFF4843	0.70	+0.5
4,828,263	-		GFF4843	0.70	+0.5
4,828,263	-		GFF4843	0.70	-0.4
4,828,263	-		GFF4843	0.70	-0.7
4,828,263	-		GFF4843	0.70	-0.0
4,828,263	-		GFF4843	0.70	+0.4
4,828,263	-		GFF4843	0.70	-0.3
4,828,268	-		GFF4843	0.73	-0.6
4,828,268	-		GFF4843	0.73	-0.8
4,828,270	-		GFF4843	0.74	+0.5
4,828,290	-		GFF4843	0.85	-1.1
4,828,305	+				-2.4
4,828,308	-				-0.5
4,828,310	+				-0.4
4,828,318	-				+0.5
4,828,323	+				-0.0
4,828,323	+				+0.3
4,828,323	+				+0.0
4,828,323	+				+0.0
4,828,323	+				+0.8
4,828,323	+				+0.8
4,828,323	+				+0.5
4,828,323	+				+1.8
4,828,323	+				+1.6
4,828,323	+				+1.3
4,828,323	+				+0.1
4,828,323	+				+0.6
4,828,323	+				+0.4
4,828,323	+				+0.2
4,828,323	-				+0.6
4,828,331	-				-0.2
4,828,331	-				+1.2
4,828,331	-				-1.0
4,828,331	-				-0.5
4,828,331	-				-0.4
4,828,331	-				-2.1
4,828,331	-				+0.3
4,828,371	-		GFF4844	0.15	-1.7
4,828,375	-		GFF4844	0.16	-0.0
4,828,412	-		GFF4844	0.29	+1.2
4,828,412	-		GFF4844	0.29	-0.0
4,828,436	-		GFF4844	0.37	-0.0
4,828,470	+		GFF4844	0.48	+0.3
4,828,470	+		GFF4844	0.48	+0.5
4,828,478	-		GFF4844	0.51	+0.2
4,828,479	+		GFF4844	0.52	+0.5
4,828,479	+		GFF4844	0.52	+0.4
4,828,480	+		GFF4844	0.52	+1.3
4,828,484	+		GFF4844	0.53	-0.8
4,828,487	-		GFF4844	0.54	-0.5
4,828,487	-		GFF4844	0.54	+0.0
4,828,488	-		GFF4844	0.55	-0.2
4,828,492	-		GFF4844	0.56	-1.5
4,828,517	+		GFF4844	0.64	+0.4
4,828,517	+		GFF4844	0.64	-1.5
4,828,517	+		GFF4844	0.64	-0.3
4,828,525	+		GFF4844	0.67	-0.5
4,828,525	-		GFF4844	0.67	+1.0
4,828,525	-		GFF4844	0.67	+0.5
4,828,525	-		GFF4844	0.67	+1.5
4,828,527	+		GFF4844	0.68	+0.8
4,828,538	+		GFF4844	0.71	+0.4
4,828,543	+		GFF4844	0.73	-0.4
4,828,543	+		GFF4844	0.73	-0.4
4,828,543	+		GFF4844	0.73	+1.1
4,828,543	+		GFF4844	0.73	+0.8
4,828,551	-		GFF4844	0.76	-0.5
4,828,551	-		GFF4844	0.76	+0.9
4,828,555	+		GFF4844	0.77	-0.8
4,828,562	+		GFF4844	0.79	+0.8
4,828,563	-		GFF4844	0.80	+0.6
4,828,617	+				+1.4
4,828,618	-				-0.5
4,828,618	-				-0.0
4,828,618	-				+0.5
4,828,619	+				+0.9
4,828,627	-				-0.7
4,828,627	-				+0.3
4,828,632	-				-1.0
4,828,641	+				+1.3
4,828,649	-				+2.7
4,828,649	-				-1.4
4,828,650	-				-0.2
4,828,665	+				-0.9
4,828,685	+				-0.5
4,828,709	+				+0.3
4,828,716	+				-1.0
4,828,717	-				-0.6
4,828,717	-				-0.3
4,828,734	+				-1.9
4,828,739	+				+0.6
4,828,740	+				+0.4
4,828,747	-				+0.9
4,828,748	-				-1.0
4,828,757	+				+0.5
4,828,757	+				-1.6
4,828,765	-				-1.5
4,828,772	-				-0.3
4,828,811	+		GFF4845	0.15	+1.0
4,828,821	-		GFF4845	0.16	-0.1
4,828,833	-		GFF4845	0.17	+0.5
4,828,863	+		GFF4845	0.21	+1.2
4,828,877	+		GFF4845	0.23	+0.5
4,828,885	-		GFF4845	0.24	-0.6
4,828,926	+		GFF4845	0.29	+0.8
4,828,931	-		GFF4845	0.30	+1.0
4,828,934	-		GFF4845	0.30	+0.1
4,828,939	-		GFF4845	0.31	-1.1
4,828,946	+		GFF4845	0.32	+1.0
4,828,954	-		GFF4845	0.33	-0.3
4,828,999	-		GFF4845	0.38	+2.0
4,828,999	-		GFF4845	0.38	+0.3
4,829,014	+		GFF4845	0.40	+1.0
4,829,017	-		GFF4845	0.41	+0.5
4,829,052	+		GFF4845	0.45	+0.6
4,829,052	+		GFF4845	0.45	+0.8
4,829,055	-		GFF4845	0.45	-1.0
4,829,057	+		GFF4845	0.46	+0.3
4,829,060	-		GFF4845	0.46	+0.6
4,829,069	+		GFF4845	0.47	-0.4
4,829,078	-		GFF4845	0.48	-0.0
4,829,090	-		GFF4845	0.50	+0.1
4,829,112	+		GFF4845	0.53	+0.6
4,829,117	+		GFF4845	0.53	-1.0
4,829,122	+		GFF4845	0.54	+0.1
4,829,125	-		GFF4845	0.54	-0.9
4,829,148	-		GFF4845	0.57	+1.9
4,829,151	-		GFF4845	0.57	-0.2
4,829,172	-		GFF4845	0.60	+1.6
4,829,172	-		GFF4845	0.60	+1.4
4,829,172	-		GFF4845	0.60	-0.5
4,829,177	+		GFF4845	0.61	+0.5
4,829,177	+		GFF4845	0.61	-0.5
4,829,177	+		GFF4845	0.61	+0.0
4,829,177	+		GFF4845	0.61	+0.4
4,829,177	+		GFF4845	0.61	+0.5
4,829,177	+		GFF4845	0.61	+0.1
4,829,182	-		GFF4845	0.61	-0.2
4,829,185	-		GFF4845	0.62	+0.7
4,829,185	-		GFF4845	0.62	-1.6
4,829,185	-		GFF4845	0.62	+0.8
4,829,185	-		GFF4845	0.62	+0.3
4,829,185	-		GFF4845	0.62	+1.2
4,829,185	-		GFF4845	0.62	+0.4
4,829,185	-		GFF4845	0.62	+0.8
4,829,185	-		GFF4845	0.62	+1.5
4,829,185	-		GFF4845	0.62	+1.1
4,829,185	-		GFF4845	0.62	-0.5
4,829,185	-		GFF4845	0.62	+0.7
4,829,200	+		GFF4845	0.64	+0.4
4,829,208	-		GFF4845	0.65	-1.6
4,829,227	-		GFF4845	0.67	+0.2
4,829,238	+		GFF4845	0.68	+0.4
4,829,268	-		GFF4845	0.72	+0.4
4,829,285	-		GFF4845	0.74	+1.2
4,829,359	-		GFF4845	0.84	+1.0
4,829,363	+		GFF4845	0.84	+0.5
4,829,366	+		GFF4845	0.85	-0.5
4,829,369	-		GFF4845	0.85	+0.2
4,829,371	+		GFF4845	0.85	+0.5
4,829,371	+		GFF4845	0.85	+0.1
4,829,427	+				-0.5
4,829,427	+				-0.9
4,829,432	+				+0.8
4,829,432	+				+0.7
4,829,471	+				-0.6
4,829,478	+				+0.1
4,829,478	+				+0.2
4,829,481	-				+0.1
4,829,486	+				+1.0
4,829,493	+				+0.5
4,829,493	+				+0.9
4,829,493	+				+1.4
4,829,501	-				+0.6
4,829,611	+				-1.0
4,829,612	+				+1.5
4,829,620	-				-1.0
4,829,633	-				+1.1
4,829,647	+				+0.1
4,829,652	+				-1.0
4,829,652	+				+0.0
4,829,660	-				+0.7
4,829,660	-				+0.8
4,829,671	+				-0.4
4,829,676	+				+0.4
4,829,684	-				+0.7
4,829,692	-				-0.5
4,829,694	+				-1.4
4,829,698	+		GFF4846	0.10	-0.8
4,829,703	+		GFF4846	0.11	+0.4
4,829,703	+		GFF4846	0.11	-0.3
4,829,703	+		GFF4846	0.11	-1.9
4,829,703	+		GFF4846	0.11	-0.7
4,829,703	+		GFF4846	0.11	+1.1
4,829,703	+		GFF4846	0.11	+0.5
4,829,703	+		GFF4846	0.11	+0.2
4,829,703	+		GFF4846	0.11	+0.1
4,829,703	+		GFF4846	0.11	-0.6
4,829,703	+		GFF4846	0.11	+0.5
4,829,711	-		GFF4846	0.12	+0.3
4,829,711	-		GFF4846	0.12	+0.7
4,829,711	-		GFF4846	0.12	+0.5
4,829,719	+		GFF4846	0.12	-0.7
4,829,734	+		GFF4846	0.14	-1.5
4,829,754	-		GFF4846	0.16	+0.2
4,829,760	+		GFF4846	0.17	+0.5
4,829,768	+		GFF4846	0.18	+1.0
4,829,789	+		GFF4846	0.20	+0.0
4,829,789	+		GFF4846	0.20	+1.9
4,829,797	-		GFF4846	0.21	-0.3
4,829,821	-		GFF4846	0.23	+0.3
4,829,827	-		GFF4846	0.24	-1.1
4,829,842	-		GFF4846	0.26	+1.1
4,829,850	-		GFF4846	0.26	-1.2
4,829,865	-		GFF4846	0.28	+0.9
4,829,865	-		GFF4846	0.28	-1.2
4,829,865	-		GFF4846	0.28	-0.2
4,829,883	+		GFF4846	0.30	-0.6
4,829,883	+		GFF4846	0.30	-0.9
4,829,886	+		GFF4846	0.30	+0.2
4,829,904	+		GFF4846	0.32	-0.0
4,829,935	+		GFF4846	0.36	-0.5
4,829,935	+		GFF4846	0.36	-1.0
4,829,949	+		GFF4846	0.37	-1.5
4,829,966	+		GFF4846	0.39	+0.2
4,829,966	+		GFF4846	0.39	+0.9
4,829,974	-		GFF4846	0.40	+1.0
4,830,003	+		GFF4846	0.43	-1.1
4,830,011	-		GFF4846	0.44	-0.5
4,830,024	+		GFF4846	0.45	+0.3
4,830,053	-		GFF4846	0.48	+0.5
4,830,079	+		GFF4846	0.51	+0.1
4,830,087	-		GFF4846	0.52	+1.6
4,830,100	+		GFF4846	0.53	+0.9
4,830,105	+		GFF4846	0.54	+0.5
4,830,105	+		GFF4846	0.54	+1.7
4,830,105	+		GFF4846	0.54	-2.0
4,830,105	+		GFF4846	0.54	+0.8
4,830,108	-		GFF4846	0.54	+1.0
4,830,113	-		GFF4846	0.55	-0.1
4,830,113	-		GFF4846	0.55	-0.0
4,830,113	-		GFF4846	0.55	+0.1
4,830,113	-		GFF4846	0.55	-0.0
4,830,115	-		GFF4846	0.55	+1.4
4,830,127	-		GFF4846	0.56	+0.8
4,830,128	+		GFF4846	0.56	+0.5
4,830,143	+		GFF4846	0.58	+0.6
4,830,153	-		GFF4846	0.59	-1.6
4,830,162	+		GFF4846	0.60	-0.2
4,830,162	+		GFF4846	0.60	+1.1
4,830,170	+		GFF4846	0.61	+0.6
4,830,170	-		GFF4846	0.61	+0.2
4,830,170	-		GFF4846	0.61	+0.0
4,830,178	+		GFF4846	0.62	+1.2
4,830,180	+		GFF4846	0.62	+0.4
4,830,180	+		GFF4846	0.62	+0.7
4,830,188	-		GFF4846	0.63	-0.0
4,830,203	-		GFF4846	0.64	-0.3
4,830,215	+		GFF4846	0.65	+0.6
4,830,219	+		GFF4846	0.66	+0.0
4,830,227	-		GFF4846	0.67	+0.2
4,830,235	-		GFF4846	0.68	-0.5
4,830,243	+		GFF4846	0.68	-1.6
4,830,251	-		GFF4846	0.69	-0.3
4,830,251	-		GFF4846	0.69	-0.3
4,830,276	+		GFF4846	0.72	-0.9
4,830,296	+		GFF4846	0.74	-0.5
4,830,304	-		GFF4846	0.75	-0.5
4,830,317	+		GFF4846	0.76	+0.1
4,830,325	-		GFF4846	0.77	-1.8
4,830,327	+		GFF4846	0.77	-0.1
4,830,330	-		GFF4846	0.78	-0.8
4,830,335	-		GFF4846	0.78	+1.4
4,830,335	-		GFF4846	0.78	+0.9
4,830,336	+		GFF4846	0.78	+1.0
4,830,367	-		GFF4846	0.82	-0.7
4,830,372	+		GFF4846	0.82	-0.4
4,830,374	-		GFF4846	0.82	+0.7
4,830,381	-		GFF4846	0.83	-0.1
4,830,393	+		GFF4846	0.85	+0.2
4,830,458	+				+1.1
4,830,458	+				+1.1
4,830,466	-				-0.7