Strain Fitness in Sphingobium sp. HT1-2 around GFF4835

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,817,915	-		GFF4833	0.76	-0.7
4,817,918	-		GFF4833	0.77	+1.4
4,817,918	-		GFF4833	0.77	-1.3
4,817,918	-		GFF4833	0.77	+1.3
4,817,918	-		GFF4833	0.77	+0.5
4,817,918	-		GFF4833	0.77	+0.0
4,817,918	-		GFF4833	0.77	+1.2
4,817,920	+		GFF4833	0.77	+0.5
4,817,920	+		GFF4833	0.77	+0.1
4,817,920	+		GFF4833	0.77	-0.3
4,817,965	+		GFF4833	0.82	+0.7
4,817,965	+		GFF4833	0.82	+1.0
4,817,965	+		GFF4833	0.82	+0.0
4,817,965	+		GFF4833	0.82	+0.1
4,817,973	-		GFF4833	0.83	+0.2
4,817,973	-		GFF4833	0.83	-0.1
4,817,977	+		GFF4833	0.84	+0.1
4,817,977	+		GFF4833	0.84	+0.1
4,817,977	+		GFF4833	0.84	-0.2
4,817,984	-		GFF4833	0.85	-0.1
4,817,985	-		GFF4833	0.85	+0.6
4,817,985	-		GFF4833	0.85	-1.8
4,817,985	-		GFF4833	0.85	-0.8
4,817,987	+		GFF4833	0.85	-2.2
4,817,987	+		GFF4833	0.85	+0.9
4,817,993	-		GFF4833	0.86	+0.2
4,818,007	+		GFF4833	0.87	+0.5
4,818,057	+				-0.3
4,818,057	+				+0.6
4,818,057	+				+1.2
4,818,058	+				+1.5
4,818,065	-				-0.6
4,818,088	-				+1.1
4,818,090	+				+0.4
4,818,113	+				-0.1
4,818,131	+				+0.8
4,818,136	-				+1.4
4,818,139	-				-0.4
4,818,146	+				+1.1
4,818,188	-				+0.8
4,818,190	+				+0.6
4,818,198	-				+1.2
4,818,246	+		GFF4834	0.10	+0.3
4,818,264	+		GFF4834	0.13	-0.1
4,818,272	+		GFF4834	0.15	+1.3
4,818,272	-		GFF4834	0.15	-0.1
4,818,272	-		GFF4834	0.15	+0.3
4,818,313	+		GFF4834	0.22	+1.0
4,818,318	+		GFF4834	0.23	+1.3
4,818,326	-		GFF4834	0.24	-0.3
4,818,335	+		GFF4834	0.26	-0.8
4,818,343	-		GFF4834	0.27	+0.8
4,818,363	-		GFF4834	0.30	-0.4
4,818,387	-		GFF4834	0.35	+0.4
4,818,387	-		GFF4834	0.35	-0.4
4,818,397	-		GFF4834	0.36	-1.5
4,818,487	-		GFF4834	0.52	-1.2
4,818,523	+		GFF4834	0.58	+1.0
4,818,536	+		GFF4834	0.60	-1.5
4,818,539	-		GFF4834	0.61	-0.7
4,818,556	+		GFF4834	0.64	-0.5
4,818,564	-		GFF4834	0.65	-0.4
4,818,564	-		GFF4834	0.65	+0.7
4,818,571	-		GFF4834	0.66	-1.1
4,818,574	-		GFF4834	0.67	+1.5
4,818,581	-		GFF4834	0.68	-0.8
4,818,588	+		GFF4834	0.69	+0.0
4,818,601	-		GFF4834	0.72	+0.3
4,818,629	-		GFF4834	0.76	+0.6
4,818,642	-		GFF4834	0.79	+1.5
4,818,642	-		GFF4834	0.79	-0.9
4,818,644	+		GFF4834	0.79	-1.2
4,818,653	-		GFF4834	0.80	-1.7
4,818,734	+				+1.3
4,818,734	+				+0.2
4,818,739	+				+0.8
4,818,739	+				+0.5
4,818,739	+				-0.1
4,818,742	-				-0.3
4,818,742	-				+1.6
4,818,755	+				-0.4
4,818,771	+				-0.8
4,818,773	-				+0.1
4,818,898	+				+0.7
4,818,898	+				-1.8
4,818,946	+				+0.4
4,818,948	+				+1.1
4,818,948	+				-0.3
4,818,953	+				+0.8
4,818,956	-				-0.7
4,818,972	+				+0.3
4,818,972	+				-0.1
4,818,972	+				+0.7
4,818,972	+				-1.2
4,818,972	+				+0.5
4,818,980	-				+0.9
4,818,980	-				+0.7
4,818,980	-				+0.3
4,818,980	-				+0.1
4,818,991	+				-0.7
4,819,002	-				+1.3
4,819,018	+		GFF4835	0.12	-0.6
4,819,018	+		GFF4835	0.12	+0.6
4,819,018	+		GFF4835	0.12	-1.1
4,819,018	+		GFF4835	0.12	+1.3
4,819,020	-		GFF4835	0.12	+0.4
4,819,026	-		GFF4835	0.12	+0.4
4,819,026	-		GFF4835	0.12	+0.1
4,819,026	-		GFF4835	0.12	-0.8
4,819,026	-		GFF4835	0.12	+0.3
4,819,036	-		GFF4835	0.13	+0.1
4,819,109	-		GFF4835	0.21	+1.3
4,819,119	+		GFF4835	0.22	+1.6
4,819,124	+		GFF4835	0.22	-1.0
4,819,124	+		GFF4835	0.22	-0.1
4,819,132	-		GFF4835	0.23	+0.3
4,819,132	-		GFF4835	0.23	-0.3
4,819,147	-		GFF4835	0.25	+0.3
4,819,150	+		GFF4835	0.25	+1.6
4,819,171	-		GFF4835	0.27	+0.8
4,819,174	-		GFF4835	0.27	+0.1
4,819,201	-		GFF4835	0.30	+0.9
4,819,207	-		GFF4835	0.31	+0.8
4,819,217	-		GFF4835	0.32	-0.4
4,819,218	-		GFF4835	0.32	-0.2
4,819,219	+		GFF4835	0.32	+1.0
4,819,219	+		GFF4835	0.32	-1.2
4,819,262	-		GFF4835	0.36	-1.8
4,819,276	+		GFF4835	0.38	+0.6
4,819,288	+		GFF4835	0.39	-0.3
4,819,290	+		GFF4835	0.39	+1.2
4,819,290	+		GFF4835	0.39	-0.9
4,819,290	+		GFF4835	0.39	+0.5
4,819,298	-		GFF4835	0.40	+1.3
4,819,304	+		GFF4835	0.40	+1.5
4,819,304	+		GFF4835	0.40	+0.4
4,819,304	+		GFF4835	0.40	+0.9
4,819,312	-		GFF4835	0.41	+0.5
4,819,315	-		GFF4835	0.42	+0.6
4,819,358	+		GFF4835	0.46	-1.0
4,819,363	+		GFF4835	0.46	+0.0
4,819,363	+		GFF4835	0.46	+0.8
4,819,365	+		GFF4835	0.47	+1.9
4,819,371	-		GFF4835	0.47	+0.7
4,819,371	-		GFF4835	0.47	-1.1
4,819,371	-		GFF4835	0.47	-1.3
4,819,373	+		GFF4835	0.47	-0.6
4,819,379	+		GFF4835	0.48	-0.5
4,819,387	+		GFF4835	0.49	-0.4
4,819,387	+		GFF4835	0.49	+0.3
4,819,389	+		GFF4835	0.49	+1.1
4,819,389	+		GFF4835	0.49	-2.4
4,819,389	+		GFF4835	0.49	+0.2
4,819,395	-		GFF4835	0.50	-0.3
4,819,420	-		GFF4835	0.52	-0.7
4,819,449	+		GFF4835	0.55	-0.7
4,819,461	+		GFF4835	0.56	+0.0
4,819,464	-		GFF4835	0.57	+2.0
4,819,464	-		GFF4835	0.57	+0.8
4,819,464	-		GFF4835	0.57	+0.6
4,819,477	+		GFF4835	0.58	-0.1
4,819,501	-		GFF4835	0.60	-0.1
4,819,503	+		GFF4835	0.61	+0.3
4,819,507	+		GFF4835	0.61	+0.9
4,819,546	-		GFF4835	0.65	-0.3
4,819,566	+		GFF4835	0.67	-0.6
4,819,566	+		GFF4835	0.67	+0.1
4,819,574	-		GFF4835	0.68	+0.7
4,819,574	-		GFF4835	0.68	+0.8
4,819,593	+		GFF4835	0.70	-1.5
4,819,599	+		GFF4835	0.70	-1.9
4,819,601	-		GFF4835	0.70	-0.8
4,819,609	-		GFF4835	0.71	+0.4
4,819,609	-		GFF4835	0.71	-0.9
4,819,613	+		GFF4835	0.72	+0.1
4,819,621	-		GFF4835	0.72	+0.5
4,819,621	-		GFF4835	0.72	-1.8
4,819,628	+		GFF4835	0.73	+0.2
4,819,632	-		GFF4835	0.74	-0.5
4,819,670	+		GFF4835	0.77	+1.4
4,819,680	+		GFF4835	0.78	-0.9
4,819,680	+		GFF4835	0.78	-0.7
4,819,680	+		GFF4835	0.78	+0.0
4,819,680	+		GFF4835	0.78	-1.0
4,819,682	+		GFF4835	0.79	+0.9
4,819,683	-		GFF4835	0.79	-2.2
4,819,688	-		GFF4835	0.79	+1.1
4,819,688	-		GFF4835	0.79	+0.1
4,819,688	-		GFF4835	0.79	-1.5
4,819,688	-		GFF4835	0.79	+0.7
4,819,688	-		GFF4835	0.79	+0.3
4,819,696	+		GFF4835	0.80	-0.0
4,819,696	+		GFF4835	0.80	+0.4
4,819,696	+		GFF4835	0.80	+0.2
4,819,696	-		GFF4835	0.80	+0.1
4,819,704	-		GFF4835	0.81	+1.0
4,819,710	-		GFF4835	0.81	-1.2
4,819,743	+		GFF4835	0.85	+0.2
4,819,756	-		GFF4835	0.86	-1.4
4,819,771	+		GFF4835	0.88	+0.8
4,819,787	+		GFF4835	0.89	+1.3
4,819,831	-				-0.3
4,819,837	+				+0.8
4,819,882	+				+0.7
4,819,884	-				-0.2
4,819,892	+				-0.5
4,819,892	+				+0.7
4,819,895	-				-0.7
4,819,900	-				-1.1
4,819,901	+				+0.3
4,819,940	-				-0.7
4,819,977	-				+1.0
4,819,984	+				-2.1
4,819,984	+				+1.1
4,819,992	-				-0.8
4,820,011	+				-0.2
4,820,011	+				+0.2
4,820,011	+				-0.3
4,820,011	+				-0.6
4,820,011	+				+1.5
4,820,011	+				-1.8
4,820,014	+				-1.2
4,820,018	+				-0.3
4,820,019	-				+0.2
4,820,019	-				+0.4
4,820,019	-				-0.3
4,820,026	-				-0.9
4,820,028	+				+0.4
4,820,054	-				-1.6
4,820,076	-				+0.7
4,820,077	+				-0.3
4,820,085	+				-0.5
4,820,101	-				+1.6
4,820,105	+				-0.4
4,820,106	-				-0.5
4,820,107	+		GFF4836	0.10	+1.2
4,820,112	+		GFF4836	0.10	-0.6
4,820,112	+		GFF4836	0.10	+0.9
4,820,112	+		GFF4836	0.10	+0.9
4,820,112	+		GFF4836	0.10	-0.2
4,820,112	+		GFF4836	0.10	+0.5
4,820,112	+		GFF4836	0.10	-0.3
4,820,120	-		GFF4836	0.11	+0.4
4,820,120	-		GFF4836	0.11	-0.0
4,820,122	+		GFF4836	0.11	-0.1
4,820,122	+		GFF4836	0.11	+0.0
4,820,122	+		GFF4836	0.11	-0.5
4,820,124	+		GFF4836	0.12	-0.5
4,820,124	+		GFF4836	0.12	+0.9
4,820,126	+		GFF4836	0.12	-1.0
4,820,132	+		GFF4836	0.12	-0.1
4,820,132	+		GFF4836	0.12	+0.9
4,820,132	+		GFF4836	0.12	-0.1
4,820,132	-		GFF4836	0.12	-0.4
4,820,134	+		GFF4836	0.12	-0.3
4,820,136	+		GFF4836	0.13	-0.6
4,820,136	+		GFF4836	0.13	-0.1
4,820,138	-		GFF4836	0.13	-0.3
4,820,140	-		GFF4836	0.13	-0.1
4,820,140	-		GFF4836	0.13	+0.9
4,820,142	-		GFF4836	0.13	+0.6
4,820,142	-		GFF4836	0.13	+1.4
4,820,144	-		GFF4836	0.13	+0.1
4,820,149	-		GFF4836	0.14	+1.7
4,820,156	+		GFF4836	0.14	+0.7
4,820,163	-		GFF4836	0.15	+0.8
4,820,170	+		GFF4836	0.16	+0.0
4,820,170	+		GFF4836	0.16	-0.1
4,820,170	+		GFF4836	0.16	+0.9
4,820,178	-		GFF4836	0.16	-0.1
4,820,180	+		GFF4836	0.17	-1.6
4,820,181	+		GFF4836	0.17	+0.0
4,820,210	+		GFF4836	0.19	+0.5
4,820,215	+		GFF4836	0.20	-2.1
4,820,223	-		GFF4836	0.20	+0.9
4,820,223	-		GFF4836	0.20	+0.1
4,820,225	+		GFF4836	0.21	+0.5
4,820,233	-		GFF4836	0.21	+0.8
4,820,253	+		GFF4836	0.23	-0.6
4,820,253	+		GFF4836	0.23	+0.5
4,820,253	+		GFF4836	0.23	-0.6
4,820,261	-		GFF4836	0.24	+0.1
4,820,277	+		GFF4836	0.25	+0.4
4,820,296	+		GFF4836	0.27	-0.6
4,820,299	-		GFF4836	0.27	-2.5
4,820,300	+		GFF4836	0.27	+0.7
4,820,300	+		GFF4836	0.27	+0.7
4,820,304	-		GFF4836	0.28	-0.7
4,820,308	-		GFF4836	0.28	+0.6
4,820,308	-		GFF4836	0.28	-0.6
4,820,308	-		GFF4836	0.28	+0.4
4,820,308	-		GFF4836	0.28	-0.4
4,820,315	-		GFF4836	0.29	-1.6
4,820,315	-		GFF4836	0.29	+0.0
4,820,329	+		GFF4836	0.30	+1.3
4,820,329	+		GFF4836	0.30	+0.6
4,820,334	+		GFF4836	0.30	-0.9
4,820,334	+		GFF4836	0.30	-0.8
4,820,334	+		GFF4836	0.30	+0.1
4,820,335	+		GFF4836	0.31	-0.1
4,820,337	-		GFF4836	0.31	+0.3
4,820,342	-		GFF4836	0.31	+0.5
4,820,342	-		GFF4836	0.31	-0.5
4,820,342	-		GFF4836	0.31	-2.5
4,820,342	-		GFF4836	0.31	+0.1
4,820,342	-		GFF4836	0.31	-1.1
4,820,342	-		GFF4836	0.31	-0.6
4,820,349	-		GFF4836	0.32	-0.1
4,820,353	+		GFF4836	0.32	+1.0
4,820,356	+		GFF4836	0.32	-0.3
4,820,380	+		GFF4836	0.35	-1.2
4,820,388	-		GFF4836	0.35	-2.3
4,820,402	-		GFF4836	0.37	-0.2
4,820,408	+		GFF4836	0.37	+0.0
4,820,408	+		GFF4836	0.37	+0.5
4,820,408	+		GFF4836	0.37	-0.1
4,820,408	+		GFF4836	0.37	+0.8
4,820,408	+		GFF4836	0.37	+0.8
4,820,408	+		GFF4836	0.37	+0.5
4,820,408	+		GFF4836	0.37	-1.0
4,820,416	-		GFF4836	0.38	+0.9
4,820,416	-		GFF4836	0.38	+0.5
4,820,430	-		GFF4836	0.39	+0.7
4,820,457	+		GFF4836	0.42	+0.8
4,820,457	+		GFF4836	0.42	+0.0
4,820,465	-		GFF4836	0.42	-0.2
4,820,483	-		GFF4836	0.44	-1.5
4,820,522	+		GFF4836	0.47	+0.7
4,820,525	-		GFF4836	0.48	+0.0
4,820,527	+		GFF4836	0.48	-0.2
4,820,527	+		GFF4836	0.48	-0.1
4,820,527	+		GFF4836	0.48	+0.1
4,820,527	+		GFF4836	0.48	+0.1
4,820,527	+		GFF4836	0.48	-0.2
4,820,527	+		GFF4836	0.48	-2.3
4,820,527	+		GFF4836	0.48	-0.5
4,820,527	+		GFF4836	0.48	+1.2
4,820,527	+		GFF4836	0.48	-0.5
4,820,527	+		GFF4836	0.48	-0.1
4,820,527	+		GFF4836	0.48	-1.1
4,820,527	+		GFF4836	0.48	+0.4
4,820,527	+		GFF4836	0.48	+0.7
4,820,527	+		GFF4836	0.48	-0.2
4,820,527	+		GFF4836	0.48	-1.8
4,820,527	+		GFF4836	0.48	-2.4
4,820,530	-		GFF4836	0.48	+0.2
4,820,535	-		GFF4836	0.49	+0.1
4,820,535	-		GFF4836	0.49	+0.0
4,820,535	-		GFF4836	0.49	+0.7
4,820,535	-		GFF4836	0.49	-0.5
4,820,535	-		GFF4836	0.49	-0.9
4,820,535	-		GFF4836	0.49	+0.9
4,820,535	-		GFF4836	0.49	-0.5
4,820,535	-		GFF4836	0.49	-0.2
4,820,535	-		GFF4836	0.49	+0.7
4,820,535	-		GFF4836	0.49	-1.2
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4,820,848	+		GFF4836	0.77	+0.7
4,820,852	+		GFF4836	0.77	-2.1