Strain Fitness in Sphingobium sp. HT1-2 around GFF4817

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,802,012	-		GFF4814	0.21	+0.1
4,802,014	+		GFF4814	0.22	-1.8
4,802,014	+		GFF4814	0.22	+0.4
4,802,022	-		GFF4814	0.26	+0.7
4,802,039	-		GFF4814	0.35	-0.2
4,802,057	+		GFF4814	0.44	+0.9
4,802,065	-		GFF4814	0.48	+0.5
4,802,130	+		GFF4814	0.82	-0.9
4,802,160	-				+0.0
4,802,167	+				-0.7
4,802,168	+				-1.6
4,802,175	-				-0.5
4,802,217	+				-0.3
4,802,217	+				-0.7
4,802,217	+				-0.2
4,802,217	+				-2.0
4,802,225	-				-0.1
4,802,225	-				+0.4
4,802,299	-				-1.5
4,802,299	-				+0.6
4,802,319	+				+0.9
4,802,338	+		GFF4815	0.14	+0.1
4,802,372	+		GFF4815	0.21	-1.4
4,802,380	-		GFF4815	0.22	+0.1
4,802,380	-		GFF4815	0.22	-0.8
4,802,386	+		GFF4815	0.24	+0.8
4,802,394	-		GFF4815	0.25	+1.0
4,802,394	-		GFF4815	0.25	-0.5
4,802,406	-		GFF4815	0.28	-0.2
4,802,417	-		GFF4815	0.30	-1.4
4,802,419	+		GFF4815	0.31	-0.5
4,802,422	-		GFF4815	0.31	-0.8
4,802,422	-		GFF4815	0.31	+0.6
4,802,425	-		GFF4815	0.32	-0.8
4,802,427	-		GFF4815	0.32	-1.2
4,802,477	-		GFF4815	0.43	+1.0
4,802,488	-		GFF4815	0.45	-1.5
4,802,498	-		GFF4815	0.47	-1.1
4,802,499	-		GFF4815	0.47	+0.4
4,802,526	-		GFF4815	0.53	-0.9
4,802,534	+		GFF4815	0.55	-1.1
4,802,534	+		GFF4815	0.55	+0.6
4,802,542	+		GFF4815	0.56	+1.9
4,802,542	+		GFF4815	0.56	-0.5
4,802,542	-		GFF4815	0.56	-3.5
4,802,550	-		GFF4815	0.58	-0.3
4,802,558	+		GFF4815	0.60	-1.0
4,802,566	-		GFF4815	0.61	-0.2
4,802,587	-		GFF4815	0.66	-1.8
4,802,591	+		GFF4815	0.67	-0.9
4,802,656	+		GFF4815	0.80	+0.4
4,802,656	+		GFF4815	0.80	+1.1
4,802,656	+		GFF4815	0.80	+0.3
4,802,664	-		GFF4815	0.82	+0.2
4,802,670	+		GFF4815	0.83	+0.6
4,802,678	+		GFF4815	0.85	-0.9
4,802,678	-		GFF4815	0.85	-1.4
4,802,678	-		GFF4815	0.85	+0.4
4,802,697	+		GFF4815	0.89	-0.4
4,802,738	+				+0.2
4,802,764	-				+0.9
4,802,824	-		GFF4816	0.20	+0.2
4,802,846	+		GFF4816	0.38	-1.6
4,802,846	+		GFF4816	0.38	+1.2
4,802,883	-		GFF4816	0.68	-0.2
4,802,892	+		GFF4816	0.76	+1.2
4,802,915	+				+1.0
4,802,923	-				+0.8
4,802,923	-				+0.4
4,802,923	-				+1.7
4,802,923	-				+1.4
4,802,928	-				-0.2
4,802,971	-				+0.7
4,803,049	+		GFF4817	0.22	-0.3
4,803,049	+		GFF4817	0.22	+0.1
4,803,062	-		GFF4817	0.28	-1.1
4,803,062	-		GFF4817	0.28	+0.4
4,803,071	-		GFF4817	0.33	+0.8
4,803,087	+		GFF4817	0.42	+0.7
4,803,096	-		GFF4817	0.47	+1.2
4,803,108	+		GFF4817	0.53	+0.1
4,803,108	+		GFF4817	0.53	-0.3
4,803,108	+		GFF4817	0.53	+1.0
4,803,160	+		GFF4817	0.81	+0.2
4,803,160	+		GFF4817	0.81	+0.3
4,803,161	-		GFF4817	0.82	-0.4
4,803,164	+		GFF4817	0.83	-2.1
4,803,167	-		GFF4817	0.85	-0.4
4,803,172	-		GFF4817	0.88	-0.0
4,803,213	-				+1.8
4,803,226	-				+0.3
4,803,226	-				-0.3
4,803,261	-				+0.7
4,803,303	-				+0.0
4,803,303	-				+0.3
4,803,311	-				+0.3
4,803,345	+				-1.0
4,803,374	-				-1.2
4,803,392	+				-0.5
4,803,392	+				-0.3
4,803,400	-				-0.7
4,803,401	+				+1.7
4,803,407	+				-0.9
4,803,415	-				+1.1
4,803,422	-		GFF4818	0.10	+1.4
4,803,434	-		GFF4818	0.11	-0.2
4,803,461	+		GFF4818	0.14	+0.1
4,803,468	+		GFF4818	0.15	-2.0
4,803,468	+		GFF4818	0.15	+0.1
4,803,472	+		GFF4818	0.15	-2.3
4,803,476	-		GFF4818	0.15	-0.0
4,803,476	-		GFF4818	0.15	+1.0
4,803,524	+		GFF4818	0.20	-0.3
4,803,524	+		GFF4818	0.20	-0.3
4,803,527	-		GFF4818	0.20	-0.4
4,803,532	-		GFF4818	0.21	-0.8
4,803,539	+		GFF4818	0.21	+0.2
4,803,549	-		GFF4818	0.22	-0.0
4,803,571	+		GFF4818	0.24	+1.3
4,803,615	-		GFF4818	0.28	+0.7
4,803,615	-		GFF4818	0.28	+1.7
4,803,647	+		GFF4818	0.31	+0.0
4,803,649	+		GFF4818	0.32	+0.3
4,803,649	+		GFF4818	0.32	-1.0
4,803,649	+		GFF4818	0.32	-0.6
4,803,649	+		GFF4818	0.32	+1.0
4,803,651	+		GFF4818	0.32	-0.7
4,803,651	+		GFF4818	0.32	+0.5
4,803,651	+		GFF4818	0.32	+0.3
4,803,651	+		GFF4818	0.32	+0.8
4,803,657	-		GFF4818	0.32	-0.3
4,803,657	-		GFF4818	0.32	-0.0
4,803,659	-		GFF4818	0.33	-0.9
4,803,679	+		GFF4818	0.34	-1.6
4,803,705	+		GFF4818	0.37	+0.5
4,803,716	+		GFF4818	0.38	+0.0
4,803,724	-		GFF4818	0.39	-1.2
4,803,741	-		GFF4818	0.40	-0.7
4,803,784	+		GFF4818	0.44	+0.1
4,803,784	+		GFF4818	0.44	+1.3
4,803,784	+		GFF4818	0.44	-0.3
4,803,792	-		GFF4818	0.45	+1.3
4,803,792	-		GFF4818	0.45	-0.4
4,803,792	-		GFF4818	0.45	+0.8
4,803,792	-		GFF4818	0.45	-0.6
4,803,816	+		GFF4818	0.47	+0.8
4,803,848	+		GFF4818	0.50	+0.2
4,803,848	+		GFF4818	0.50	+0.6
4,803,856	-		GFF4818	0.51	+0.9
4,803,856	-		GFF4818	0.51	+1.3
4,803,856	-		GFF4818	0.51	+0.4
4,803,856	-		GFF4818	0.51	-1.8
4,803,859	+		GFF4818	0.51	-0.0
4,803,869	+		GFF4818	0.52	+0.3
4,803,869	+		GFF4818	0.52	-1.0
4,803,877	-		GFF4818	0.53	-0.6
4,803,878	-		GFF4818	0.53	+0.6
4,803,883	-		GFF4818	0.54	+1.1
4,803,885	+		GFF4818	0.54	-0.1
4,803,885	-		GFF4818	0.54	+1.3
4,803,885	-		GFF4818	0.54	-0.7
4,803,893	-		GFF4818	0.55	+0.7
4,803,902	+		GFF4818	0.55	+0.1
4,803,912	+		GFF4818	0.56	+1.3
4,803,952	-		GFF4818	0.60	+0.0
4,803,956	-		GFF4818	0.60	+1.4
4,804,012	+		GFF4818	0.66	+0.3
4,804,012	+		GFF4818	0.66	+0.9
4,804,012	+		GFF4818	0.66	+0.0
4,804,020	-		GFF4818	0.66	-0.6
4,804,042	+		GFF4818	0.69	+0.6
4,804,042	+		GFF4818	0.69	+0.3
4,804,042	+		GFF4818	0.69	+0.1
4,804,046	-		GFF4818	0.69	+0.3
4,804,050	-		GFF4818	0.69	+0.8
4,804,050	-		GFF4818	0.69	-0.1
4,804,084	+		GFF4818	0.72	+0.0
4,804,084	+		GFF4818	0.72	+1.0
4,804,084	+		GFF4818	0.72	+0.8
4,804,092	-		GFF4818	0.73	-0.0
4,804,092	-		GFF4818	0.73	+0.1
4,804,092	-		GFF4818	0.73	-0.3
4,804,092	-		GFF4818	0.73	+0.3
4,804,092	-		GFF4818	0.73	+0.0
4,804,092	-		GFF4818	0.73	+0.6
4,804,092	-		GFF4818	0.73	+2.1
4,804,113	+		GFF4818	0.75	+0.1
4,804,137	+		GFF4818	0.77	-0.5
4,804,145	-		GFF4818	0.78	+1.3
4,804,186	-		GFF4818	0.82	+1.0