Strain Fitness in Sphingobium sp. HT1-2 around GFF4805

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,795,882	+		GFF4802	0.36	-0.4
4,795,890	-		GFF4802	0.40	-0.8
4,795,897	+		GFF4802	0.44	+1.6
4,795,899	+		GFF4802	0.45	+0.8
4,795,900	-		GFF4802	0.45	-0.5
4,795,907	-		GFF4802	0.49	-2.2
4,795,908	+		GFF4802	0.50	+0.0
4,795,917	-		GFF4802	0.55	-1.1
4,795,931	+		GFF4802	0.62	-0.2
4,795,964	-		GFF4802	0.80	+0.2
4,795,980	+		GFF4802	0.89	-0.8
4,795,980	+		GFF4802	0.89	-0.8
4,795,988	-				-1.0
4,795,988	-				+0.4
4,795,993	+				+0.5
4,796,011	+				+0.0
4,796,016	+				+0.8
4,796,019	-				-1.0
4,796,019	-				+1.3
4,796,019	-				+1.3
4,796,024	+				+0.2
4,796,024	-				+0.3
4,796,026	+				+0.3
4,796,029	-				+0.7
4,796,029	-				+0.5
4,796,049	+				-0.3
4,796,060	+				+0.3
4,796,060	+				-0.4
4,796,068	-				+0.5
4,796,071	+				+0.6
4,796,082	+		GFF4803	0.14	-0.3
4,796,100	-		GFF4803	0.27	+0.5
4,796,146	+		GFF4803	0.61	+0.1
4,796,148	+		GFF4803	0.63	+0.1
4,796,190	+				-0.3
4,796,226	-				+0.7
4,796,235	-				-1.1
4,796,246	+				+0.4
4,796,246	-				-0.2
4,796,266	+				+1.0
4,796,274	-				+0.1
4,796,274	-				-0.3
4,796,274	-				-0.2
4,796,274	-				-0.1
4,796,274	-				+1.0
4,796,274	-				+0.6
4,796,274	-				-0.6
4,796,274	-				+0.1
4,796,362	-		GFF4804	0.21	+0.5
4,796,362	-		GFF4804	0.21	-0.1
4,796,362	-		GFF4804	0.21	-0.5
4,796,367	+		GFF4804	0.22	+0.2
4,796,367	+		GFF4804	0.22	-1.5
4,796,375	-		GFF4804	0.24	-0.8
4,796,385	-		GFF4804	0.26	+0.8
4,796,390	+		GFF4804	0.28	-0.6
4,796,390	+		GFF4804	0.28	+0.2
4,796,402	+		GFF4804	0.30	+0.6
4,796,402	+		GFF4804	0.30	-1.1
4,796,402	+		GFF4804	0.30	+1.6
4,796,402	+		GFF4804	0.30	+0.2
4,796,402	-		GFF4804	0.30	+0.3
4,796,410	-		GFF4804	0.32	+0.3
4,796,412	+		GFF4804	0.33	+0.9
4,796,427	-		GFF4804	0.36	-0.2
4,796,432	+		GFF4804	0.37	-1.2
4,796,441	+		GFF4804	0.39	+1.0
4,796,478	+		GFF4804	0.48	-1.5
4,796,522	+		GFF4804	0.58	-0.3
4,796,523	-		GFF4804	0.58	+0.4
4,796,530	-		GFF4804	0.60	-0.8
4,796,536	+		GFF4804	0.61	-0.1
4,796,551	+		GFF4804	0.65	+0.9
4,796,553	-		GFF4804	0.65	+0.2
4,796,597	+		GFF4804	0.75	+0.2
4,796,597	+		GFF4804	0.75	+0.9
4,796,597	+		GFF4804	0.75	-0.2
4,796,597	+		GFF4804	0.75	-0.5
4,796,605	-		GFF4804	0.77	-0.4
4,796,605	-		GFF4804	0.77	-1.1
4,796,610	-		GFF4804	0.78	+0.3
4,796,615	+		GFF4804	0.79	+0.3
4,796,632	-		GFF4804	0.83	+0.1
4,796,642	+		GFF4804	0.86	-0.1
4,796,650	-		GFF4804	0.87	+1.0
4,796,667	+				+0.2
4,796,675	-				+1.3
4,796,678	+				+1.3
4,796,683	+				-0.7
4,796,686	-				-0.6
4,796,689	+				+0.3
4,796,799	+				-0.4
4,796,853	+				-1.8
4,796,873	-				+0.0
4,796,883	-				-0.5
4,796,883	-				-0.8
4,796,897	+				+0.2
4,796,915	+				-0.1
4,796,915	+				-3.1
4,796,921	+				-2.3
4,796,923	-				-1.1
4,796,926	-				+0.1
4,796,962	-		GFF4805	0.12	+0.6
4,796,962	-		GFF4805	0.12	+0.3
4,796,996	+		GFF4805	0.16	+0.3
4,797,049	+		GFF4805	0.22	+0.3
4,797,054	+		GFF4805	0.23	+1.2
4,797,054	+		GFF4805	0.23	+0.2
4,797,057	-		GFF4805	0.23	-0.7
4,797,062	-		GFF4805	0.24	-2.8
4,797,062	-		GFF4805	0.24	+0.7
4,797,077	+		GFF4805	0.26	-0.5
4,797,078	+		GFF4805	0.26	-0.7
4,797,078	+		GFF4805	0.26	+0.2
4,797,078	+		GFF4805	0.26	-1.3
4,797,086	-		GFF4805	0.27	+0.0
4,797,086	-		GFF4805	0.27	-0.2
4,797,086	-		GFF4805	0.27	-2.4
4,797,086	-		GFF4805	0.27	-0.9
4,797,086	-		GFF4805	0.27	+0.6
4,797,108	+		GFF4805	0.29	+0.5
4,797,115	+		GFF4805	0.30	-0.6
4,797,115	+		GFF4805	0.30	-1.0
4,797,115	+		GFF4805	0.30	-0.2
4,797,115	+		GFF4805	0.30	-0.4
4,797,123	-		GFF4805	0.31	+1.2
4,797,123	-		GFF4805	0.31	-1.3
4,797,123	-		GFF4805	0.31	-0.4
4,797,123	-		GFF4805	0.31	-2.3
4,797,123	-		GFF4805	0.31	-2.0
4,797,123	-		GFF4805	0.31	+0.6
4,797,123	-		GFF4805	0.31	+0.5
4,797,123	-		GFF4805	0.31	-0.8
4,797,123	-		GFF4805	0.31	-0.9
4,797,134	+		GFF4805	0.32	-0.5
4,797,134	+		GFF4805	0.32	+0.4
4,797,134	+		GFF4805	0.32	+0.4
4,797,142	-		GFF4805	0.33	-0.3
4,797,153	+		GFF4805	0.35	-1.2
4,797,180	+		GFF4805	0.38	-1.0
4,797,184	+		GFF4805	0.39	-2.3
4,797,191	+		GFF4805	0.39	-0.4
4,797,191	+		GFF4805	0.39	+0.2
4,797,199	-		GFF4805	0.40	+0.4
4,797,219	-		GFF4805	0.43	+0.3
4,797,232	+		GFF4805	0.44	+0.1
4,797,242	+		GFF4805	0.46	+0.0
4,797,242	+		GFF4805	0.46	+0.9
4,797,250	-		GFF4805	0.46	+0.6
4,797,252	-		GFF4805	0.47	-0.1
4,797,265	-		GFF4805	0.48	-1.2
4,797,267	+		GFF4805	0.49	-0.7
4,797,275	-		GFF4805	0.50	-0.8
4,797,275	-		GFF4805	0.50	+0.7
4,797,277	+		GFF4805	0.50	+0.4
4,797,312	-		GFF4805	0.54	+0.7
4,797,314	+		GFF4805	0.54	-2.5
4,797,314	+		GFF4805	0.54	+1.0
4,797,323	-		GFF4805	0.55	-0.1
4,797,330	+		GFF4805	0.56	-0.5
4,797,330	+		GFF4805	0.56	-0.7
4,797,336	+		GFF4805	0.57	+0.2
4,797,363	+		GFF4805	0.60	-2.6
4,797,364	+		GFF4805	0.60	+0.4
4,797,389	+		GFF4805	0.63	-0.3
4,797,423	-		GFF4805	0.67	-2.0
4,797,454	+		GFF4805	0.71	+0.0
4,797,481	+		GFF4805	0.74	-0.4
4,797,486	+		GFF4805	0.75	-0.8
4,797,491	+		GFF4805	0.76	-1.3
4,797,499	+		GFF4805	0.77	+1.4
4,797,551	-		GFF4805	0.83	+1.7
4,797,575	-		GFF4805	0.86	+0.3
4,797,599	+		GFF4805	0.89	-0.3
4,797,623	+				+0.3
4,797,631	+				+0.5
4,797,636	+				+0.2
4,797,666	-				+1.9
4,797,666	-				-0.4
4,797,673	+				+0.0
4,797,678	+				+0.1
4,797,685	+				+1.4
4,797,695	+				+0.4
4,797,700	+				+0.6
4,797,703	-				+0.0
4,797,703	-				+0.2
4,797,708	-				-0.5
4,797,708	-				-0.1
4,797,723	+				+0.8
4,797,782	+		GFF4806	0.35	-0.2
4,797,782	+		GFF4806	0.35	+0.0
4,797,782	+		GFF4806	0.35	-0.1
4,797,783	+		GFF4806	0.36	+0.3
4,797,787	+		GFF4806	0.38	+0.1
4,797,790	-		GFF4806	0.40	+0.3
4,797,790	-		GFF4806	0.40	+0.2
4,797,823	+		GFF4806	0.59	-0.1
4,797,835	+		GFF4806	0.66	+0.1
4,797,840	+		GFF4806	0.68	-0.8
4,797,844	+		GFF4806	0.71	+0.1
4,797,848	-		GFF4806	0.73	+0.2
4,797,888	+				+0.3
4,797,888	+				-1.8
4,797,888	+				+0.1
4,797,888	+				+0.2
4,797,896	-				+0.2
4,797,896	-				+1.7
4,797,896	-				+0.4
4,797,901	-				-1.3
4,797,936	+				-0.4
4,797,971	-				-1.1
4,798,021	+				-0.1
4,798,021	+				-0.3
4,798,021	+				+0.8
4,798,021	+				-0.1
4,798,021	+				-0.2
4,798,021	+				+0.1
4,798,021	+				-1.4
4,798,021	+				-0.4
4,798,029	-				+0.3
4,798,029	-				+0.4
4,798,029	-				+1.4
4,798,029	-				+1.0
4,798,029	-				+1.3
4,798,035	+				-0.5
4,798,037	+				-0.5
4,798,042	+				-0.3
4,798,042	+				+0.3
4,798,057	+				-0.7
4,798,057	+				-2.1
4,798,057	+				-0.3
4,798,057	+				-0.2
4,798,065	-				-1.1
4,798,067	-				+1.1
4,798,078	+				+0.2
4,798,078	+				+0.3
4,798,079	+				+0.3
4,798,086	-				-0.3
4,798,086	-				+0.7
4,798,086	-				+0.5
4,798,086	-				-0.4
4,798,086	-				-0.3
4,798,105	+				+0.7
4,798,123	-				-1.2
4,798,133	+				+0.0
4,798,135	+				-0.4
4,798,143	-				+1.0
4,798,178	+				+0.7
4,798,219	-				+0.1
4,798,254	+				-0.2
4,798,259	+				+0.0
4,798,262	-				-0.1
4,798,272	+				+0.5
4,798,280	-				+0.7
4,798,280	-				+0.8
4,798,280	-				-1.8
4,798,295	+				+1.4
4,798,300	-				+0.5
4,798,300	-				+0.3
4,798,321	+				-1.0
4,798,359	+				+0.5
4,798,372	-				-0.9
4,798,377	-				-0.7
4,798,395	+				-0.1
4,798,460	+		GFF4807	0.54	-0.2
4,798,465	+		GFF4807	0.59	-1.2
4,798,473	-		GFF4807	0.66	-1.3
4,798,498	+		GFF4807	0.88	+0.6
4,798,498	+		GFF4807	0.88	-0.3
4,798,498	+		GFF4807	0.88	-0.7
4,798,498	+		GFF4807	0.88	+0.8
4,798,506	-				-1.2
4,798,506	-				-0.4
4,798,506	-				-1.5
4,798,506	-				-2.1
4,798,508	+				-2.3
4,798,516	-				-1.7
4,798,570	+				-1.2
4,798,578	-				-1.8
4,798,601	-				-0.3
4,798,606	-				-0.1
4,798,615	+				-0.7
4,798,616	+				+0.3
4,798,624	-				+0.0
4,798,633	-				-2.5
4,798,658	+				+1.3