Strain Fitness in Sphingobium sp. HT1-2 around GFF4735

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,733,397	+		GFF4734	0.29	-0.5
4,733,473	+		GFF4734	0.35	+0.2
4,733,476	-		GFF4734	0.35	-1.0
4,733,478	+		GFF4734	0.35	-0.2
4,733,572	-		GFF4734	0.42	+0.2
4,733,615	-		GFF4734	0.45	-0.2
4,733,621	-		GFF4734	0.45	+0.4
4,733,766	+		GFF4734	0.56	-1.4
4,733,783	+		GFF4734	0.57	+0.5
4,733,783	+		GFF4734	0.57	+0.1
4,733,899	-		GFF4734	0.66	-1.8
4,733,926	+		GFF4734	0.68	-1.3
4,733,935	+		GFF4734	0.68	-0.9
4,733,936	+		GFF4734	0.68	+0.7
4,733,954	+		GFF4734	0.70	+0.9
4,733,964	+		GFF4734	0.70	+0.9
4,733,974	+		GFF4734	0.71	+1.5
4,733,984	-		GFF4734	0.72	+1.3
4,733,986	-		GFF4734	0.72	+0.1
4,734,004	+		GFF4734	0.73	+0.1
4,734,012	-		GFF4734	0.74	+0.4
4,734,038	+		GFF4734	0.76	+0.6
4,734,043	+		GFF4734	0.76	-0.1
4,734,046	-		GFF4734	0.76	+0.2
4,734,087	+		GFF4734	0.79	+0.4
4,734,087	+		GFF4734	0.79	-1.0
4,734,087	+		GFF4734	0.79	-0.8
4,734,095	-		GFF4734	0.80	+1.1
4,734,095	-		GFF4734	0.80	-0.4
4,734,095	-		GFF4734	0.80	-2.0
4,734,095	-		GFF4734	0.80	+0.4
4,734,119	+		GFF4734	0.82	-1.1
4,734,127	-		GFF4734	0.82	+0.2
4,734,168	+		GFF4734	0.85	-0.0
4,734,168	+		GFF4734	0.85	-0.4
4,734,169	+		GFF4734	0.85	+0.6
4,734,202	+		GFF4734	0.88	-0.5
4,734,233	+				-1.7
4,734,233	+				+0.9
4,734,237	+				+0.6
4,734,240	-				+0.3
4,734,291	+				-0.1
4,734,318	+				+0.9
4,734,338	+				+0.5
4,734,338	+				+0.7
4,734,346	-				+0.4
4,734,348	+				+1.3
4,734,365	-				+1.7
4,734,394	+				+0.2
4,734,402	-				+1.0
4,734,402	-				+0.2
4,734,406	-				-0.1
4,734,487	+		GFF4735	0.12	-0.6
4,734,487	+		GFF4735	0.12	+0.4
4,734,497	+		GFF4735	0.13	+0.7
4,734,521	+		GFF4735	0.15	-1.1
4,734,521	+		GFF4735	0.15	+0.1
4,734,529	-		GFF4735	0.16	+0.8
4,734,529	-		GFF4735	0.16	+0.4
4,734,529	-		GFF4735	0.16	+0.2
4,734,534	+		GFF4735	0.16	+0.2
4,734,566	+		GFF4735	0.19	-0.1
4,734,586	-		GFF4735	0.21	+1.6
4,734,586	-		GFF4735	0.21	+0.9
4,734,621	+		GFF4735	0.25	-0.1
4,734,632	-		GFF4735	0.26	-1.0
4,734,632	-		GFF4735	0.26	+0.3
4,734,636	+		GFF4735	0.26	+1.0
4,734,637	-		GFF4735	0.26	-0.1
4,734,654	-		GFF4735	0.28	-1.3
4,734,672	-		GFF4735	0.29	-0.9
4,734,762	-		GFF4735	0.38	+0.4
4,734,802	+		GFF4735	0.42	+2.9
4,734,813	-		GFF4735	0.43	+0.3
4,734,826	+		GFF4735	0.44	-0.3
4,734,826	+		GFF4735	0.44	-0.6
4,734,935	+		GFF4735	0.55	+0.5
4,734,983	-		GFF4735	0.59	+1.1
4,735,069	+		GFF4735	0.68	+1.9
4,735,111	+		GFF4735	0.72	-0.0
4,735,139	-		GFF4735	0.74	+0.2
4,735,141	+		GFF4735	0.75	-0.4
4,735,147	+		GFF4735	0.75	+0.2
4,735,147	+		GFF4735	0.75	+0.6
4,735,147	+		GFF4735	0.75	+0.2
4,735,147	+		GFF4735	0.75	+0.2
4,735,149	-		GFF4735	0.75	+1.0
4,735,149	-		GFF4735	0.75	+0.4
4,735,159	+		GFF4735	0.76	+0.4
4,735,169	+		GFF4735	0.77	-0.6
4,735,172	-		GFF4735	0.78	-0.2
4,735,193	+		GFF4735	0.80	+0.2
4,735,194	+		GFF4735	0.80	-0.7
4,735,194	+		GFF4735	0.80	-0.4
4,735,201	-		GFF4735	0.80	-0.1
4,735,201	-		GFF4735	0.80	+1.2
4,735,210	+		GFF4735	0.81	-2.4
4,735,299	-		GFF4735	0.90	+0.1
4,735,306	+				+1.1
4,735,306	+				+0.1
4,735,306	+				+0.6
4,735,306	+				+0.5
4,735,306	+				+0.4
4,735,306	+				-1.3
4,735,306	+				+2.2
4,735,314	-				+0.2
4,735,314	-				-0.2
4,735,314	-				+1.0
4,735,321	+				-0.3
4,735,321	+				-0.4
4,735,383	+				+0.5
4,735,393	-				-0.1
4,735,403	+				+0.1
4,735,410	-				-0.1
4,735,411	-				+0.7
4,735,494	-				-0.7
4,735,498	+				-0.1
4,735,522	-		GFF4736	0.10	-0.2
4,735,535	+		GFF4736	0.12	-0.2
4,735,543	-		GFF4736	0.12	+1.4
4,735,591	-		GFF4736	0.16	-0.8
4,735,610	-		GFF4736	0.18	+1.0
4,735,647	+		GFF4736	0.21	+0.1
4,735,657	+		GFF4736	0.22	+1.0
4,735,664	+		GFF4736	0.23	-0.3
4,735,672	-		GFF4736	0.23	+0.5
4,735,677	-		GFF4736	0.24	+0.9
4,735,691	+		GFF4736	0.25	-0.3
4,735,692	+		GFF4736	0.25	-1.6
4,735,705	-		GFF4736	0.26	+0.6
4,735,722	+		GFF4736	0.28	+0.1
4,735,723	-		GFF4736	0.28	-0.3
4,735,727	+		GFF4736	0.28	+0.1
4,735,727	+		GFF4736	0.28	-0.8
4,735,735	-		GFF4736	0.29	+0.3
4,735,759	+		GFF4736	0.31	-2.1
4,735,771	+		GFF4736	0.32	-0.4
4,735,820	+		GFF4736	0.36	-0.6
4,735,828	-		GFF4736	0.37	-0.6
4,735,828	-		GFF4736	0.37	-1.7
4,735,828	-		GFF4736	0.37	-1.8
4,735,828	-		GFF4736	0.37	+1.1
4,735,845	-		GFF4736	0.38	+0.5
4,735,845	-		GFF4736	0.38	-0.4
4,735,845	-		GFF4736	0.38	-0.7
4,735,901	+		GFF4736	0.43	+1.0
4,735,911	+		GFF4736	0.44	+1.4
4,735,928	+		GFF4736	0.45	+0.7
4,735,928	+		GFF4736	0.45	-0.4
4,735,963	+		GFF4736	0.48	+0.7
4,735,963	+		GFF4736	0.48	+0.4
4,735,963	+		GFF4736	0.48	+0.9
4,735,963	+		GFF4736	0.48	+0.5
4,735,976	+		GFF4736	0.49	+1.6
4,735,976	+		GFF4736	0.49	-0.2
4,735,976	+		GFF4736	0.49	+0.4
4,735,976	+		GFF4736	0.49	-0.3
4,735,976	+		GFF4736	0.49	-1.1
4,735,984	-		GFF4736	0.50	-0.4
4,735,984	-		GFF4736	0.50	+0.7
4,735,984	-		GFF4736	0.50	+1.3
4,735,984	-		GFF4736	0.50	+0.5
4,736,027	-		GFF4736	0.54	+0.9
4,736,027	-		GFF4736	0.54	-0.2
4,736,046	+		GFF4736	0.55	+1.0
4,736,046	-		GFF4736	0.55	-0.1
4,736,061	-		GFF4736	0.57	+1.3
4,736,070	-		GFF4736	0.58	+0.4
4,736,119	-		GFF4736	0.62	+2.1
4,736,119	-		GFF4736	0.62	-1.4
4,736,125	+		GFF4736	0.62	-0.9
4,736,130	+		GFF4736	0.63	-0.4
4,736,133	-		GFF4736	0.63	+1.1
4,736,133	-		GFF4736	0.63	-0.9
4,736,167	+		GFF4736	0.66	+0.2
4,736,177	+		GFF4736	0.67	-0.1
4,736,177	+		GFF4736	0.67	+0.2
4,736,177	+		GFF4736	0.67	+0.4
4,736,177	+		GFF4736	0.67	+0.8
4,736,177	+		GFF4736	0.67	+0.6
4,736,177	+		GFF4736	0.67	+0.2
4,736,177	+		GFF4736	0.67	+0.6
4,736,185	-		GFF4736	0.67	+0.5
4,736,185	-		GFF4736	0.67	+0.0
4,736,185	-		GFF4736	0.67	+0.1
4,736,185	-		GFF4736	0.67	+1.2
4,736,185	-		GFF4736	0.67	+0.7
4,736,219	+		GFF4736	0.70	+0.6
4,736,219	-		GFF4736	0.70	+1.9
4,736,225	-		GFF4736	0.71	+0.2
4,736,229	-		GFF4736	0.71	+1.3
4,736,243	+		GFF4736	0.72	+1.1
4,736,243	+		GFF4736	0.72	-0.9
4,736,245	-		GFF4736	0.73	-2.4
4,736,251	-		GFF4736	0.73	+0.3
4,736,251	-		GFF4736	0.73	-0.5
4,736,251	-		GFF4736	0.73	+1.6
4,736,295	-		GFF4736	0.77	+0.3
4,736,295	-		GFF4736	0.77	+1.5
4,736,295	-		GFF4736	0.77	+1.2
4,736,306	-		GFF4736	0.78	-1.5
4,736,306	-		GFF4736	0.78	+1.7
4,736,315	+		GFF4736	0.79	+0.2
4,736,315	+		GFF4736	0.79	+1.1
4,736,371	+		GFF4736	0.83	+0.6
4,736,371	+		GFF4736	0.83	+0.3
4,736,377	-		GFF4736	0.84	-3.0