Strain Fitness in Sphingobium sp. HT1-2 around GFF4719

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,718,520	+		GFF4716	0.48	+0.3
4,718,541	+		GFF4716	0.52	-1.6
4,718,541	-		GFF4716	0.52	+0.3
4,718,549	-		GFF4716	0.54	-2.1
4,718,587	-		GFF4716	0.61	+0.2
4,718,587	-		GFF4716	0.61	-1.0
4,718,615	-		GFF4716	0.67	+0.7
4,718,624	-		GFF4716	0.69	+0.2
4,718,630	+		GFF4716	0.70	-0.7
4,718,633	+		GFF4716	0.71	-0.7
4,718,692	+		GFF4716	0.83	-1.0
4,718,722	+		GFF4716	0.89	-0.5
4,718,730	-				+0.1
4,718,773	+				+1.0
4,718,773	+				-1.6
4,718,773	+				+1.1
4,718,773	-				-0.5
4,718,784	+				-1.9
4,718,792	-				-0.1
4,718,832	+		GFF4717	0.11	-1.7
4,718,840	-		GFF4717	0.12	+1.6
4,718,865	+		GFF4717	0.17	-0.7
4,718,865	+		GFF4717	0.17	+0.3
4,718,865	+		GFF4717	0.17	+0.4
4,718,865	+		GFF4717	0.17	-1.6
4,718,865	+		GFF4717	0.17	-2.1
4,718,865	+		GFF4717	0.17	+0.4
4,718,865	+		GFF4717	0.17	-0.6
4,718,873	-		GFF4717	0.18	-0.6
4,718,873	-		GFF4717	0.18	+0.5
4,718,873	-		GFF4717	0.18	-2.2
4,718,873	-		GFF4717	0.18	-0.5
4,718,879	+		GFF4717	0.20	-0.7
4,718,879	+		GFF4717	0.20	-2.1
4,718,887	-		GFF4717	0.21	+1.0
4,718,889	-		GFF4717	0.21	-0.7
4,718,891	+		GFF4717	0.22	+0.0
4,718,891	-		GFF4717	0.22	+0.3
4,718,893	+		GFF4717	0.22	-0.3
4,718,899	-		GFF4717	0.23	-0.8
4,718,899	-		GFF4717	0.23	+0.2
4,718,905	+		GFF4717	0.24	+0.2
4,718,952	+		GFF4717	0.33	+0.3
4,719,070	+		GFF4717	0.56	+0.3
4,719,070	+		GFF4717	0.56	-0.9
4,719,078	-		GFF4717	0.57	-0.1
4,719,078	-		GFF4717	0.57	-0.5
4,719,078	-		GFF4717	0.57	-0.1
4,719,092	+		GFF4717	0.60	-0.1
4,719,122	-		GFF4717	0.65	+0.9
4,719,124	-		GFF4717	0.66	-0.5
4,719,148	-		GFF4717	0.70	-0.2
4,719,188	+		GFF4717	0.78	-0.2
4,719,196	-		GFF4717	0.79	+0.2
4,719,196	-		GFF4717	0.79	-0.5
4,719,196	-		GFF4717	0.79	+1.2
4,719,208	-		GFF4717	0.82	-1.2
4,719,267	-				-0.2
4,719,271	+				-0.8
4,719,271	+				-2.6
4,719,274	-				+1.0
4,719,282	-				+1.1
4,719,282	-				+1.3
4,719,298	+				-0.5
4,719,329	+				-1.7
4,719,329	-				+0.5
4,719,337	-				+0.7
4,719,425	+		GFF4718	0.68	+0.3
4,719,425	+		GFF4718	0.68	+0.8
4,719,425	+		GFF4718	0.68	-1.3
4,719,425	+		GFF4718	0.68	-2.7
4,719,433	-		GFF4718	0.74	+0.7
4,719,433	-		GFF4718	0.74	+0.3
4,719,433	-		GFF4718	0.74	-0.9
4,719,433	-		GFF4718	0.74	-0.1
4,719,434	-		GFF4718	0.74	+0.8
4,719,502	+				+0.1
4,719,514	+				-1.5
4,719,519	+				-0.3
4,719,531	+				-1.1
4,719,550	+				+0.4
4,719,550	-				+1.1
4,719,562	+				-0.2
4,719,571	-				+0.1
4,719,612	+				-2.2
4,719,635	+		GFF4719	0.11	-0.7
4,719,643	-		GFF4719	0.12	-0.0
4,719,643	-		GFF4719	0.12	-0.6
4,719,652	+		GFF4719	0.13	-0.7
4,719,660	-		GFF4719	0.14	+0.5
4,719,675	+		GFF4719	0.15	-0.0
4,719,703	-		GFF4719	0.18	-0.6
4,719,705	+		GFF4719	0.18	+0.4
4,719,712	+		GFF4719	0.18	-0.7
4,719,744	-		GFF4719	0.21	+0.6
4,719,749	+		GFF4719	0.22	+1.6
4,719,770	+		GFF4719	0.24	+0.0
4,719,784	+		GFF4719	0.25	-0.0
4,719,796	+		GFF4719	0.26	-0.9
4,719,808	+		GFF4719	0.27	+0.5
4,719,811	-		GFF4719	0.28	+0.2
4,719,876	-		GFF4719	0.34	-2.2
4,719,902	+		GFF4719	0.36	-1.0
4,719,905	-		GFF4719	0.36	+1.0
4,719,905	-		GFF4719	0.36	-0.4
4,719,910	+		GFF4719	0.37	+1.5
4,719,910	+		GFF4719	0.37	-0.2
4,719,910	+		GFF4719	0.37	-1.3
4,719,910	+		GFF4719	0.37	+0.7
4,719,910	+		GFF4719	0.37	-0.9
4,719,910	+		GFF4719	0.37	+0.8
4,719,917	-		GFF4719	0.37	-0.7
4,719,968	-		GFF4719	0.42	-0.5
4,719,970	+		GFF4719	0.42	+0.8
4,719,972	+		GFF4719	0.42	-1.7
4,719,977	+		GFF4719	0.43	-0.2
4,719,977	+		GFF4719	0.43	+0.6
4,719,977	+		GFF4719	0.43	-1.2
4,720,002	+		GFF4719	0.45	-0.0
4,720,054	-		GFF4719	0.50	+0.6
4,720,054	-		GFF4719	0.50	-2.6
4,720,056	-		GFF4719	0.50	-1.6
4,720,066	-		GFF4719	0.51	+1.5
4,720,068	+		GFF4719	0.51	+0.2
4,720,076	-		GFF4719	0.52	+0.7
4,720,099	-		GFF4719	0.54	+0.6
4,720,150	+		GFF4719	0.59	+0.5
4,720,155	+		GFF4719	0.59	-2.1
4,720,155	+		GFF4719	0.59	-0.7
4,720,155	+		GFF4719	0.59	-0.3
4,720,155	+		GFF4719	0.59	+1.0
4,720,155	+		GFF4719	0.59	-0.7
4,720,155	+		GFF4719	0.59	+0.0
4,720,155	+		GFF4719	0.59	+1.5
4,720,155	+		GFF4719	0.59	-0.8
4,720,158	-		GFF4719	0.59	-0.5
4,720,158	-		GFF4719	0.59	-0.2
4,720,160	+		GFF4719	0.60	+0.9
4,720,160	+		GFF4719	0.60	+1.1
4,720,163	-		GFF4719	0.60	-0.6
4,720,163	-		GFF4719	0.60	-1.2
4,720,163	-		GFF4719	0.60	+0.1
4,720,163	-		GFF4719	0.60	+0.8
4,720,163	-		GFF4719	0.60	-1.3
4,720,173	+		GFF4719	0.61	+1.1
4,720,173	+		GFF4719	0.61	-0.9
4,720,204	+		GFF4719	0.64	+0.6
4,720,216	+		GFF4719	0.65	-1.4
4,720,219	-		GFF4719	0.65	-0.4
4,720,236	-		GFF4719	0.67	+1.6
4,720,257	-		GFF4719	0.69	-0.3
4,720,268	+		GFF4719	0.70	-0.9
4,720,270	+		GFF4719	0.70	-0.7
4,720,273	+		GFF4719	0.70	+1.0
4,720,276	+		GFF4719	0.70	+0.4
4,720,282	-		GFF4719	0.71	-0.2
4,720,286	+		GFF4719	0.71	+0.4
4,720,288	+		GFF4719	0.71	-0.0
4,720,293	+		GFF4719	0.72	-2.4
4,720,293	+		GFF4719	0.72	-0.6
4,720,293	+		GFF4719	0.72	-1.7
4,720,294	-		GFF4719	0.72	-0.6
4,720,296	-		GFF4719	0.72	+0.7
4,720,296	-		GFF4719	0.72	+0.5
4,720,301	-		GFF4719	0.73	+0.0
4,720,301	-		GFF4719	0.73	+0.5
4,720,301	-		GFF4719	0.73	-2.1
4,720,301	-		GFF4719	0.73	+0.8
4,720,301	-		GFF4719	0.73	+0.8
4,720,301	-		GFF4719	0.73	-0.2
4,720,301	-		GFF4719	0.73	-0.6
4,720,301	-		GFF4719	0.73	+0.6
4,720,301	-		GFF4719	0.73	+0.3
4,720,338	+		GFF4719	0.76	-1.2
4,720,338	+		GFF4719	0.76	-0.4
4,720,338	+		GFF4719	0.76	+0.6
4,720,338	+		GFF4719	0.76	-1.3
4,720,338	+		GFF4719	0.76	+1.3
4,720,343	+		GFF4719	0.76	+1.2
4,720,343	+		GFF4719	0.76	+0.0
4,720,346	-		GFF4719	0.77	+0.4
4,720,346	-		GFF4719	0.77	-1.1
4,720,346	-		GFF4719	0.77	+2.0
4,720,346	-		GFF4719	0.77	+0.1
4,720,346	-		GFF4719	0.77	-0.2
4,720,346	-		GFF4719	0.77	-0.4
4,720,346	-		GFF4719	0.77	-0.6
4,720,351	-		GFF4719	0.77	+1.3
4,720,351	-		GFF4719	0.77	+0.0
4,720,383	+		GFF4719	0.80	-0.9
4,720,385	+		GFF4719	0.80	-2.2
4,720,401	+		GFF4719	0.82	+0.3
4,720,438	-		GFF4719	0.85	+0.7
4,720,522	-				-0.3
4,720,538	+				-1.3
4,720,545	+				-0.6
4,720,565	-				-0.4
4,720,588	+				-0.7
4,720,596	+				-0.4
4,720,596	-				+0.9
4,720,596	-				-0.1
4,720,596	-				+0.6
4,720,630	-				-0.5
4,720,630	-				-0.8
4,720,642	+				+0.5
4,720,651	-				+1.1
4,720,675	+				-0.0
4,720,681	+				+0.7
4,720,692	+				-1.0
4,720,695	-				-1.6
4,720,710	-		GFF4720	0.11	-1.0
4,720,733	+		GFF4720	0.15	-0.7
4,720,750	+		GFF4720	0.18	+0.7
4,720,768	+		GFF4720	0.21	+0.2
4,720,768	+		GFF4720	0.21	-0.2
4,720,768	+		GFF4720	0.21	-0.1
4,720,768	+		GFF4720	0.21	-0.0
4,720,768	+		GFF4720	0.21	+0.7
4,720,773	+		GFF4720	0.22	+1.1
4,720,773	+		GFF4720	0.22	-1.5
4,720,776	-		GFF4720	0.22	-0.4
4,720,781	-		GFF4720	0.23	-1.2
4,720,781	-		GFF4720	0.23	+0.2
4,720,786	+		GFF4720	0.24	+1.3
4,720,788	-		GFF4720	0.24	+1.3
4,720,794	-		GFF4720	0.25	+0.1
4,720,822	+		GFF4720	0.30	-0.7
4,720,822	+		GFF4720	0.30	-1.6
4,720,822	+		GFF4720	0.30	-0.0
4,720,822	+		GFF4720	0.30	+0.3
4,720,830	-		GFF4720	0.31	-0.3
4,720,830	-		GFF4720	0.31	+0.6
4,720,858	+		GFF4720	0.36	-0.5
4,720,866	-		GFF4720	0.37	+0.0
4,720,866	-		GFF4720	0.37	-1.6
4,720,866	-		GFF4720	0.37	+0.3
4,720,869	-		GFF4720	0.37	-2.6
4,720,931	-		GFF4720	0.48	-2.1
4,720,933	+		GFF4720	0.48	-0.1
4,720,933	+		GFF4720	0.48	-0.1
4,720,941	-		GFF4720	0.49	-1.4
4,720,941	-		GFF4720	0.49	+0.0
4,720,941	-		GFF4720	0.49	-2.3
4,720,941	-		GFF4720	0.49	+1.2
4,720,941	-		GFF4720	0.49	-0.2
4,720,948	-		GFF4720	0.50	-0.0
4,720,974	+		GFF4720	0.55	+0.2
4,720,980	+		GFF4720	0.56	+0.8
4,720,988	+		GFF4720	0.57	+0.3
4,720,998	-		GFF4720	0.58	-0.2
4,721,000	+		GFF4720	0.59	+0.9
4,721,049	+		GFF4720	0.67	+0.4
4,721,049	+		GFF4720	0.67	+0.1
4,721,049	+		GFF4720	0.67	+0.1
4,721,050	-		GFF4720	0.67	-1.2
4,721,056	+		GFF4720	0.68	-0.1
4,721,057	-		GFF4720	0.68	+0.8
4,721,071	-		GFF4720	0.70	+0.8
4,721,081	+		GFF4720	0.72	-0.6
4,721,081	+		GFF4720	0.72	-0.1
4,721,081	+		GFF4720	0.72	+0.2
4,721,081	+		GFF4720	0.72	-1.1
4,721,081	+		GFF4720	0.72	+0.3
4,721,081	+		GFF4720	0.72	-0.4
4,721,081	+		GFF4720	0.72	+0.1
4,721,081	+		GFF4720	0.72	+0.4
4,721,081	+		GFF4720	0.72	-0.8
4,721,088	-		GFF4720	0.73	+0.4
4,721,089	-		GFF4720	0.73	-0.4
4,721,089	-		GFF4720	0.73	+1.4
4,721,089	-		GFF4720	0.73	+0.7
4,721,089	-		GFF4720	0.73	+0.9
4,721,089	-		GFF4720	0.73	+0.8
4,721,089	-		GFF4720	0.73	-1.8
4,721,089	-		GFF4720	0.73	+0.7
4,721,106	+		GFF4720	0.76	+0.4
4,721,106	+		GFF4720	0.76	-1.1
4,721,113	+		GFF4720	0.77	-2.0
4,721,113	+		GFF4720	0.77	-0.3
4,721,135	+		GFF4720	0.81	+0.4
4,721,135	+		GFF4720	0.81	-0.9
4,721,143	-		GFF4720	0.82	-0.3
4,721,143	-		GFF4720	0.82	-0.0
4,721,176	+		GFF4720	0.88	+0.4
4,721,176	+		GFF4720	0.88	-0.1
4,721,176	+		GFF4720	0.88	+0.4
4,721,184	-		GFF4720	0.89	+1.1
4,721,184	-		GFF4720	0.89	+0.1
4,721,184	-		GFF4720	0.89	-0.1
4,721,236	+				-1.4
4,721,239	-				+0.5
4,721,293	+				-0.8
4,721,294	-				+0.4
4,721,298	+				+1.8
4,721,298	+				+0.1
4,721,298	+				-1.6
4,721,306	-				-0.4
4,721,306	-				-0.4
4,721,353	+				-0.1
4,721,353	+				-0.3
4,721,354	-				+0.1
4,721,356	+				-0.9
4,721,368	-				+1.1
4,721,392	+		GFF4721	0.10	+0.5
4,721,392	+		GFF4721	0.10	+0.4
4,721,399	-		GFF4721	0.11	-2.4
4,721,400	-		GFF4721	0.11	+1.3
4,721,400	-		GFF4721	0.11	-0.8
4,721,400	-		GFF4721	0.11	+0.6
4,721,437	-		GFF4721	0.13	+0.1
4,721,481	+		GFF4721	0.17	+0.8
4,721,481	+		GFF4721	0.17	+0.1
4,721,481	+		GFF4721	0.17	+0.9
4,721,486	+		GFF4721	0.17	+0.1
4,721,486	+		GFF4721	0.17	+0.2
4,721,489	-		GFF4721	0.17	+0.5
4,721,493	+		GFF4721	0.17	+1.2
4,721,493	+		GFF4721	0.17	-0.5
4,721,493	+		GFF4721	0.17	-1.0
4,721,493	+		GFF4721	0.17	-2.0
4,721,496	+		GFF4721	0.18	+0.7
4,721,501	+		GFF4721	0.18	-1.2
4,721,501	-		GFF4721	0.18	+0.7
4,721,501	-		GFF4721	0.18	-0.7
4,721,531	+		GFF4721	0.20	+0.1
4,721,533	+		GFF4721	0.20	+0.7
4,721,533	+		GFF4721	0.20	+1.2
4,721,533	+		GFF4721	0.20	+1.2
4,721,533	+		GFF4721	0.20	+1.3
4,721,533	+		GFF4721	0.20	+1.6
4,721,533	+		GFF4721	0.20	-1.0
4,721,533	+		GFF4721	0.20	-0.2
4,721,533	+		GFF4721	0.20	+0.1
4,721,533	+		GFF4721	0.20	-1.2
4,721,533	+		GFF4721	0.20	+0.0
4,721,538	+		GFF4721	0.21	+0.3
4,721,541	-		GFF4721	0.21	+0.2
4,721,541	-		GFF4721	0.21	-0.2
4,721,541	-		GFF4721	0.21	-0.1
4,721,541	-		GFF4721	0.21	+0.5
4,721,541	-		GFF4721	0.21	+0.4
4,721,541	-		GFF4721	0.21	-0.1
4,721,541	-		GFF4721	0.21	-0.8
4,721,541	-		GFF4721	0.21	+0.1
4,721,541	-		GFF4721	0.21	-0.6
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