Strain Fitness in Sphingobium sp. HT1-2 around GFF4713

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,712,102	+				-0.5
4,712,143	+				+0.7
4,712,143	+				-1.2
4,712,143	+				-1.2
4,712,143	+				+0.9
4,712,151	-				+1.3
4,712,151	-				+0.9
4,712,151	-				+0.1
4,712,153	+				+0.5
4,712,166	-				+0.0
4,712,176	-				+0.4
4,712,176	-				+0.3
4,712,186	-				+0.6
4,712,189	+				-0.0
4,712,189	+				-1.3
4,712,189	+				+0.5
4,712,191	-				+0.6
4,712,196	+				-2.3
4,712,224	+		GFF4711	0.10	+0.8
4,712,231	+		GFF4711	0.12	+1.2
4,712,231	+		GFF4711	0.12	+1.0
4,712,231	+		GFF4711	0.12	-2.6
4,712,232	-		GFF4711	0.12	+0.1
4,712,232	-		GFF4711	0.12	+1.5
4,712,234	-		GFF4711	0.12	-0.3
4,712,239	-		GFF4711	0.13	-0.7
4,712,255	-		GFF4711	0.17	-1.6
4,712,273	-		GFF4711	0.21	+0.3
4,712,273	-		GFF4711	0.21	-0.2
4,712,283	+		GFF4711	0.23	+0.5
4,712,289	-		GFF4711	0.24	-1.2
4,712,300	+		GFF4711	0.26	-0.4
4,712,302	+		GFF4711	0.27	-0.4
4,712,302	+		GFF4711	0.27	+0.3
4,712,302	+		GFF4711	0.27	-1.8
4,712,302	+		GFF4711	0.27	-0.4
4,712,308	-		GFF4711	0.28	+1.4
4,712,310	-		GFF4711	0.28	+1.3
4,712,310	-		GFF4711	0.28	-0.5
4,712,310	-		GFF4711	0.28	+0.8
4,712,310	-		GFF4711	0.28	-0.7
4,712,329	+		GFF4711	0.32	-0.2
4,712,344	-		GFF4711	0.35	-3.1
4,712,348	+		GFF4711	0.36	+1.0
4,712,359	-		GFF4711	0.39	+0.1
4,712,373	+		GFF4711	0.42	-0.5
4,712,380	+		GFF4711	0.43	-2.0
4,712,380	+		GFF4711	0.43	+0.0
4,712,380	+		GFF4711	0.43	-2.8
4,712,388	-		GFF4711	0.45	-0.5
4,712,397	+		GFF4711	0.47	-0.4
4,712,413	-		GFF4711	0.50	+0.1
4,712,442	-		GFF4711	0.56	+0.4
4,712,486	-		GFF4711	0.65	-0.8
4,712,507	-		GFF4711	0.70	+0.0
4,712,584	+		GFF4711	0.86	-0.5
4,712,584	+		GFF4711	0.86	+1.0
4,712,584	+		GFF4711	0.86	-0.5
4,712,592	-		GFF4711	0.87	-0.7
4,712,592	-		GFF4711	0.87	-0.0
4,712,592	-		GFF4711	0.87	-0.3
4,712,592	-		GFF4711	0.87	+1.1
4,712,592	-		GFF4711	0.87	+0.9
4,712,604	-				-0.0
4,712,611	+				+0.6
4,712,611	+				+0.5
4,712,611	+				-0.7
4,712,611	+				+0.7
4,712,611	+				-1.2
4,712,611	+				+0.5
4,712,612	+				+0.5
4,712,619	-				-0.7
4,712,619	-				+0.9
4,712,619	-				+0.9
4,712,619	-				-0.7
4,712,619	-				+1.4
4,712,619	-				+0.8
4,712,619	-				+1.2
4,712,619	-				+0.3
4,712,623	+				+0.3
4,712,631	-				+1.1
4,712,640	+				+0.3
4,712,640	+				+0.6
4,712,640	+				-1.2
4,712,648	-				-0.5
4,712,648	-				+0.3
4,712,648	-				+0.6
4,712,699	-		GFF4712	0.14	+0.5
4,712,699	-		GFF4712	0.14	+0.1
4,712,710	+		GFF4712	0.18	+0.3
4,712,724	+		GFF4712	0.22	-0.3
4,712,724	+		GFF4712	0.22	-0.6
4,712,732	-		GFF4712	0.25	+1.3
4,712,745	+		GFF4712	0.29	+1.6
4,712,748	-		GFF4712	0.30	+0.8
4,712,766	+		GFF4712	0.36	-0.7
4,712,774	-		GFF4712	0.38	-0.2
4,712,787	+		GFF4712	0.42	+0.5
4,712,816	-		GFF4712	0.52	+0.8
4,712,845	+		GFF4712	0.61	+0.9
4,712,885	+		GFF4712	0.74	+0.4
4,712,885	+		GFF4712	0.74	+0.6
4,712,885	+		GFF4712	0.74	-0.9
4,712,893	-		GFF4712	0.76	+0.3
4,712,893	-		GFF4712	0.76	+1.0
4,712,893	-		GFF4712	0.76	+0.0
4,712,924	+		GFF4712	0.86	-0.5
4,712,934	+		GFF4712	0.89	-0.1
4,712,942	-				+0.8
4,712,942	-				-0.7
4,712,942	-				+0.8
4,712,951	-				-1.3
4,712,960	+				-0.5
4,712,960	+				-1.3
4,712,961	-				-2.5
4,712,965	+				-0.2
4,712,965	+				-0.7
4,712,965	+				-0.3
4,712,968	-				-0.2
4,712,968	-				-0.7
4,712,970	+				+0.8
4,712,973	-				+0.9
4,712,973	-				-1.1
4,712,984	-				+0.8
4,712,986	-				-0.9
4,713,001	-				+0.7
4,713,013	+				+0.9
4,713,014	+				-1.9
4,713,021	-				+1.0
4,713,044	+				-0.4
4,713,052	-				+0.7
4,713,052	-				-0.5
4,713,064	-				-0.7
4,713,076	+				-2.1
4,713,076	+				-0.2
4,713,082	+				-0.4
4,713,083	-				+1.1
4,713,084	-				+0.9
4,713,096	+				-1.0
4,713,098	+				+0.6
4,713,100	-				-0.2
4,713,100	-				-1.9
4,713,106	+				-1.3
4,713,106	+				-0.8
4,713,106	+				+0.0
4,713,106	+				-1.3
4,713,106	+				+0.7
4,713,114	-				+0.3
4,713,114	-				+0.5
4,713,114	-				+0.1
4,713,114	-				+0.7
4,713,144	+				+0.3
4,713,188	+				+0.1
4,713,188	+				-0.9
4,713,188	-				+0.9
4,713,196	-				+0.5
4,713,196	-				+0.3
4,713,196	-				+0.2
4,713,204	+				-0.4
4,713,207	-				+0.9
4,713,238	+				+0.7
4,713,246	-				-0.3
4,713,246	-				-1.2
4,713,261	+				-0.6
4,713,261	+				+0.1
4,713,269	-				+0.5
4,713,269	-				-0.2
4,713,328	+				+0.7
4,713,328	+				-1.6
4,713,328	+				+0.2
4,713,328	+				+0.4
4,713,328	+				+0.1
4,713,328	+				+0.4
4,713,328	+				+0.1
4,713,328	+				-0.7
4,713,328	+				-0.7
4,713,328	+				+1.1
4,713,328	+				+1.1
4,713,328	+				+1.3
4,713,328	+				-0.2
4,713,328	+				+0.3
4,713,328	+				+0.4
4,713,328	+				-1.3
4,713,328	+				-0.1
4,713,328	+				+0.1
4,713,336	-				+0.7
4,713,336	-				-0.1
4,713,336	-				+0.6
4,713,336	-				-0.5
4,713,336	-				+0.3
4,713,336	-				-0.1
4,713,336	-				-0.1
4,713,336	-				+0.6
4,713,336	-				+0.8
4,713,336	-				+0.3
4,713,336	-				+1.0
4,713,336	-				-1.8
4,713,336	-				+0.7
4,713,336	-				+1.1
4,713,336	-				+0.1
4,713,336	-				-0.4
4,713,336	-				+0.2
4,713,336	-				+2.4
4,713,352	-		GFF4713	0.10	+0.0
4,713,352	-		GFF4713	0.10	+0.8
4,713,378	+		GFF4713	0.11	+0.5
4,713,450	-		GFF4713	0.14	+0.5
4,713,451	+		GFF4713	0.14	+1.3
4,713,451	+		GFF4713	0.14	-0.8
4,713,451	+		GFF4713	0.14	-0.2
4,713,451	+		GFF4713	0.14	+0.0
4,713,459	-		GFF4713	0.15	+0.9
4,713,459	-		GFF4713	0.15	+1.0
4,713,459	-		GFF4713	0.15	-0.3
4,713,459	-		GFF4713	0.15	+0.4
4,713,459	-		GFF4713	0.15	-2.3
4,713,459	-		GFF4713	0.15	-0.3
4,713,459	-		GFF4713	0.15	+0.4
4,713,459	-		GFF4713	0.15	+0.3
4,713,494	+		GFF4713	0.16	+1.0
4,713,511	+		GFF4713	0.17	+1.3
4,713,512	-		GFF4713	0.17	-0.1
4,713,517	+		GFF4713	0.17	+0.1
4,713,518	-		GFF4713	0.17	-1.0
4,713,519	-		GFF4713	0.17	+0.2
4,713,519	-		GFF4713	0.17	+1.0
4,713,519	-		GFF4713	0.17	-0.5
4,713,519	-		GFF4713	0.17	+0.7
4,713,519	-		GFF4713	0.17	+0.3
4,713,521	+		GFF4713	0.17	+1.4
4,713,521	+		GFF4713	0.17	+0.3
4,713,529	-		GFF4713	0.18	+0.8
4,713,546	+		GFF4713	0.18	+1.5
4,713,551	+		GFF4713	0.18	-1.3
4,713,553	+		GFF4713	0.18	-0.4
4,713,564	+		GFF4713	0.19	+0.8
4,713,572	-		GFF4713	0.19	+0.7
4,713,576	+		GFF4713	0.19	+1.0
4,713,604	-		GFF4713	0.21	-0.3
4,713,609	+		GFF4713	0.21	+0.8
4,713,610	+		GFF4713	0.21	+0.5
4,713,611	-		GFF4713	0.21	-0.5
4,713,620	+		GFF4713	0.21	+0.4
4,713,628	-		GFF4713	0.21	-0.3
4,713,643	-		GFF4713	0.22	-0.2
4,713,662	-		GFF4713	0.23	+0.4
4,713,673	+		GFF4713	0.23	+1.3
4,713,692	+		GFF4713	0.24	+0.9
4,713,706	-		GFF4713	0.25	+0.5
4,713,722	-		GFF4713	0.25	+1.4
4,713,730	-		GFF4713	0.26	-0.2
4,713,748	+		GFF4713	0.26	+0.1
4,713,751	-		GFF4713	0.26	+1.2
4,713,751	-		GFF4713	0.26	-0.1
4,713,756	-		GFF4713	0.27	-0.6
4,713,756	-		GFF4713	0.27	-0.2
4,713,783	+		GFF4713	0.28	-2.2
4,713,783	+		GFF4713	0.28	+1.4
4,713,796	-		GFF4713	0.28	-1.7
4,713,799	-		GFF4713	0.28	-0.1
4,713,806	+		GFF4713	0.29	-1.3
4,713,854	+		GFF4713	0.31	+1.3
4,713,876	+		GFF4713	0.31	+0.1
4,713,950	+		GFF4713	0.34	-1.3
4,713,959	+		GFF4713	0.35	-0.8
4,713,964	+		GFF4713	0.35	-0.2
4,713,992	-		GFF4713	0.36	+0.5
4,713,998	-		GFF4713	0.36	+0.4
4,714,007	-		GFF4713	0.37	+0.0
4,714,018	-		GFF4713	0.37	-0.4
4,714,019	+		GFF4713	0.37	+2.1
4,714,026	-		GFF4713	0.37	-1.2
4,714,048	+		GFF4713	0.38	+0.1
4,714,059	-		GFF4713	0.39	+1.4
4,714,120	+		GFF4713	0.41	-0.3
4,714,139	+		GFF4713	0.42	+0.8
4,714,178	-		GFF4713	0.44	-0.6
4,714,198	-		GFF4713	0.44	+0.0
4,714,201	+		GFF4713	0.44	-0.7
4,714,204	-		GFF4713	0.45	-0.4
4,714,209	+		GFF4713	0.45	+1.0
4,714,217	-		GFF4713	0.45	+0.7
4,714,217	-		GFF4713	0.45	-1.5
4,714,219	+		GFF4713	0.45	+0.6
4,714,222	-		GFF4713	0.45	-1.2
4,714,222	-		GFF4713	0.45	-0.3
4,714,222	-		GFF4713	0.45	-0.8
4,714,232	-		GFF4713	0.46	-2.5
4,714,232	-		GFF4713	0.46	+0.0
4,714,238	-		GFF4713	0.46	-0.4
4,714,253	+		GFF4713	0.47	+1.3
4,714,253	+		GFF4713	0.47	+1.3
4,714,253	+		GFF4713	0.47	-0.2
4,714,253	+		GFF4713	0.47	+0.6
4,714,256	-		GFF4713	0.47	+1.5
4,714,256	-		GFF4713	0.47	-1.1
4,714,295	+		GFF4713	0.48	+0.2
4,714,300	+		GFF4713	0.48	+0.3
4,714,300	+		GFF4713	0.48	-0.2
4,714,308	-		GFF4713	0.49	-0.2
4,714,310	+		GFF4713	0.49	+1.3
4,714,310	+		GFF4713	0.49	-0.5
4,714,326	+		GFF4713	0.50	-1.6
4,714,344	+		GFF4713	0.50	+0.0
4,714,352	-		GFF4713	0.51	+0.9
4,714,352	-		GFF4713	0.51	+0.6
4,714,359	+		GFF4713	0.51	+1.2
4,714,367	-		GFF4713	0.51	+0.8
4,714,367	-		GFF4713	0.51	+1.7
4,714,367	-		GFF4713	0.51	-0.0
4,714,367	-		GFF4713	0.51	+0.8
4,714,383	-		GFF4713	0.52	+0.2
4,714,395	+		GFF4713	0.52	+0.3
4,714,409	-		GFF4713	0.53	-0.4
4,714,411	+		GFF4713	0.53	+0.6
4,714,411	+		GFF4713	0.53	-0.3
4,714,411	+		GFF4713	0.53	+0.4
4,714,419	-		GFF4713	0.53	+0.6
4,714,423	-		GFF4713	0.53	-2.3
4,714,436	-		GFF4713	0.54	+0.6
4,714,437	-		GFF4713	0.54	-0.7
4,714,506	+		GFF4713	0.57	-0.4
4,714,522	+		GFF4713	0.57	+0.7
4,714,530	-		GFF4713	0.58	-0.3
4,714,536	+		GFF4713	0.58	-1.8
4,714,553	-		GFF4713	0.59	-0.3
4,714,560	-		GFF4713	0.59	+0.2
4,714,616	-		GFF4713	0.61	-0.8
4,714,640	-		GFF4713	0.62	-0.1
4,714,644	+		GFF4713	0.62	+0.2
4,714,650	-		GFF4713	0.63	+1.1
4,714,650	-		GFF4713	0.63	+0.4
4,714,650	-		GFF4713	0.63	+0.8
4,714,676	+		GFF4713	0.64	-0.3
4,714,684	-		GFF4713	0.64	-0.3
4,714,684	-		GFF4713	0.64	+0.3
4,714,684	-		GFF4713	0.64	-2.1
4,714,693	+		GFF4713	0.64	+0.1
4,714,694	+		GFF4713	0.64	-0.5
4,714,701	-		GFF4713	0.65	-1.1
4,714,715	-		GFF4713	0.65	+0.6
4,714,731	-		GFF4713	0.66	+0.7
4,714,739	+		GFF4713	0.66	-0.1
4,714,747	-		GFF4713	0.66	+0.4
4,714,747	-		GFF4713	0.66	-0.8
4,714,747	-		GFF4713	0.66	-0.9
4,714,747	-		GFF4713	0.66	-0.0
4,714,793	+		GFF4713	0.68	+0.3
4,714,794	-		GFF4713	0.68	-1.6
4,714,799	-		GFF4713	0.69	+1.0
4,714,799	-		GFF4713	0.69	+0.5
4,714,813	+		GFF4713	0.69	+0.8
4,714,826	-		GFF4713	0.70	+0.3
4,714,828	-		GFF4713	0.70	-1.6
4,714,831	-		GFF4713	0.70	+0.0
4,714,854	-		GFF4713	0.71	+0.3
4,714,860	+		GFF4713	0.71	-2.3
4,714,863	-		GFF4713	0.71	-1.8
4,714,864	-		GFF4713	0.71	+0.3
4,714,873	-		GFF4713	0.71	+0.4
4,714,893	-		GFF4713	0.72	-1.1
4,714,939	-		GFF4713	0.74	-0.0
4,714,979	-		GFF4713	0.76	+2.0
4,714,984	+		GFF4713	0.76	+0.3
4,714,987	-		GFF4713	0.76	+1.7
4,714,997	-		GFF4713	0.76	+0.8
4,715,004	-		GFF4713	0.77	-2.0
4,715,007	-		GFF4713	0.77	+1.3
4,715,012	+		GFF4713	0.77	+0.4
4,715,043	-		GFF4713	0.78	+0.4
4,715,045	+		GFF4713	0.78	-0.6
4,715,092	-		GFF4713	0.80	+0.7
4,715,094	+		GFF4713	0.80	+0.0
4,715,097	-		GFF4713	0.80	-0.1
4,715,124	+		GFF4713	0.82	+1.7
4,715,132	-		GFF4713	0.82	-2.1
4,715,142	+		GFF4713	0.82	+0.9
4,715,142	+		GFF4713	0.82	-0.3
4,715,144	+		GFF4713	0.82	-0.7
4,715,144	+		GFF4713	0.82	+1.0
4,715,150	-		GFF4713	0.83	+1.0
4,715,151	+		GFF4713	0.83	+0.9
4,715,189	+		GFF4713	0.84	+0.2
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4,715,268	+		GFF4713	0.87	+1.0
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4,715,297	+		GFF4713	0.89	-1.0
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4,715,305	-		GFF4713	0.89	-0.1
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4,715,308	+		GFF4713	0.89	+0.5
4,715,330	+		GFF4713	0.90	-0.9
4,715,333	+		GFF4713	0.90	-1.8
4,715,338	-				+0.9
4,715,338	-				+0.1
4,715,344	+				+1.3
4,715,352	-				+1.2
4,715,375	+				-0.8
4,715,383	-				-0.2
4,715,397	+				-2.3
4,715,398	+				+0.1
4,715,406	-				-0.6
4,715,406	-				+0.4
4,715,410	+				-0.2
4,715,410	+				-0.4
4,715,410	+				+1.3
4,715,412	+				-0.9
4,715,418	-				-0.7
4,715,418	-				-0.2
4,715,420	-				-0.6
4,715,434	+				+0.2
4,715,434	+				-0.0
4,715,434	+				-0.1
4,715,434	+				-1.6
4,715,434	+				-0.2
4,715,442	-				-0.6
4,715,442	-				-0.4
4,715,442	-				+2.0
4,715,453	-				-1.4
4,715,458	+				-0.1
4,715,468	+				-1.4
4,715,492	+				-0.4
4,715,519	+				-1.4
4,715,519	+				+1.1
4,715,538	+				+0.4
4,715,543	+				-2.6
4,715,544	-				-0.2
4,715,562	+				-1.8
4,715,562	+				-0.6
4,715,570	-				+0.7
4,715,570	-				+1.2
4,715,570	-				-1.6
4,715,570	-				+1.4
4,715,625	-				+0.9
4,715,654	-				-0.1
4,715,656	+				+0.5
4,715,664	-				-0.9
4,715,666	+				-1.6
4,715,673	+				+0.9
4,715,673	-				-1.1
4,715,674	-				-0.0
4,715,710	-				+1.2
4,715,722	+				+0.3
4,715,769	+				-0.2
4,715,777	+				-0.1
4,715,804	-		GFF4714	0.10	+0.6
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4,715,817	+		GFF4714	0.11	-1.6
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4,715,817	+		GFF4714	0.11	+0.4
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4,715,828	+		GFF4714	0.12	-0.1
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4,715,863	+		GFF4714	0.14	-0.1
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4,715,936	+		GFF4714	0.18	-2.0
4,715,936	+		GFF4714	0.18	-2.4
4,715,944	-		GFF4714	0.18	+1.5
4,715,944	-		GFF4714	0.18	-0.3
4,715,944	-		GFF4714	0.18	+0.1
4,715,992	-		GFF4714	0.21	+0.2
4,716,087	+		GFF4714	0.26	-0.7
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4,716,112	+		GFF4714	0.28	+0.5
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4,716,164	-		GFF4714	0.31	-1.0
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4,716,173	+		GFF4714	0.31	-0.2
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4,716,181	-		GFF4714	0.32	+1.0
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4,716,188	-		GFF4714	0.32	-2.2
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4,716,217	-		GFF4714	0.34	+0.7
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4,716,222	-		GFF4714	0.34	-2.8
4,716,222	-		GFF4714	0.34	+0.5
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4,716,232	-		GFF4714	0.34	-1.9
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4,716,480	+		GFF4714	0.48	-2.1
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4,716,580	+		GFF4714	0.54	+0.6