Strain Fitness in Sphingobium sp. HT1-2 around GFF4689

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,689,670	-				-0.6
4,689,692	-				-0.7
4,689,697	-				-1.4
4,689,704	-				+0.9
4,689,709	-				-0.5
4,689,733	+				+0.8
4,689,733	+				+0.3
4,689,734	+				-0.9
4,689,734	+				+0.9
4,689,734	+				-1.1
4,689,741	-				+0.4
4,689,741	-				-1.4
4,689,742	-				-0.1
4,689,742	-				-0.2
4,689,742	-				+0.4
4,689,742	-				-0.0
4,689,749	+				+0.6
4,689,752	-				-0.2
4,689,757	-				+0.5
4,689,759	+				+0.7
4,689,759	+				-1.2
4,689,767	-		GFF4688	0.10	+0.4
4,689,767	-		GFF4688	0.10	-1.8
4,689,767	-		GFF4688	0.10	+1.2
4,689,767	-		GFF4688	0.10	+0.5
4,689,767	-		GFF4688	0.10	+0.2
4,689,767	-		GFF4688	0.10	+0.9
4,689,767	-		GFF4688	0.10	-0.5
4,689,767	-		GFF4688	0.10	+1.1
4,689,769	+		GFF4688	0.10	-0.9
4,689,777	-		GFF4688	0.11	+0.2
4,689,777	-		GFF4688	0.11	+1.1
4,689,793	+		GFF4688	0.13	+0.2
4,689,814	-		GFF4688	0.15	-0.5
4,689,818	-		GFF4688	0.15	+0.5
4,689,869	+		GFF4688	0.21	-0.7
4,689,869	+		GFF4688	0.21	+1.4
4,689,926	-		GFF4688	0.26	+0.9
4,689,941	-		GFF4688	0.28	+0.6
4,689,948	-		GFF4688	0.28	-0.1
4,689,958	-		GFF4688	0.30	-0.2
4,690,002	+		GFF4688	0.34	-0.1
4,690,003	-		GFF4688	0.34	-0.7
4,690,009	-		GFF4688	0.35	-0.8
4,690,009	-		GFF4688	0.35	+0.6
4,690,022	+		GFF4688	0.36	-0.5
4,690,022	+		GFF4688	0.36	-0.1
4,690,022	+		GFF4688	0.36	-1.9
4,690,022	+		GFF4688	0.36	+0.3
4,690,028	-		GFF4688	0.37	-0.8
4,690,028	-		GFF4688	0.37	-0.5
4,690,030	-		GFF4688	0.37	-0.0
4,690,030	-		GFF4688	0.37	+0.6
4,690,033	+		GFF4688	0.37	+1.1
4,690,041	-		GFF4688	0.38	-0.1
4,690,047	+		GFF4688	0.38	+1.4
4,690,055	-		GFF4688	0.39	-1.0
4,690,065	+		GFF4688	0.40	-0.2
4,690,065	+		GFF4688	0.40	+0.6
4,690,065	+		GFF4688	0.40	+0.6
4,690,065	+		GFF4688	0.40	+0.2
4,690,065	+		GFF4688	0.40	-0.0
4,690,073	-		GFF4688	0.41	-0.6
4,690,075	+		GFF4688	0.41	+0.9
4,690,088	-		GFF4688	0.43	-0.2
4,690,100	+		GFF4688	0.44	-0.3
4,690,108	-		GFF4688	0.45	+0.7
4,690,108	-		GFF4688	0.45	+0.1
4,690,111	+		GFF4688	0.45	-1.5
4,690,111	+		GFF4688	0.45	+1.5
4,690,111	+		GFF4688	0.45	+0.6
4,690,113	-		GFF4688	0.45	+0.5
4,690,119	-		GFF4688	0.46	+0.8
4,690,121	+		GFF4688	0.46	+0.2
4,690,139	+		GFF4688	0.48	+0.2
4,690,139	+		GFF4688	0.48	-0.7
4,690,139	+		GFF4688	0.48	-1.8
4,690,144	+		GFF4688	0.48	-1.1
4,690,144	+		GFF4688	0.48	-0.6
4,690,147	-		GFF4688	0.49	-0.5
4,690,147	-		GFF4688	0.49	+1.6
4,690,147	-		GFF4688	0.49	+0.9
4,690,152	-		GFF4688	0.49	-1.2
4,690,152	-		GFF4688	0.49	+0.5
4,690,177	-		GFF4688	0.52	-0.0
4,690,193	-		GFF4688	0.53	-0.0
4,690,193	-		GFF4688	0.53	-0.1
4,690,196	+		GFF4688	0.53	+0.4
4,690,210	-		GFF4688	0.55	+0.6
4,690,227	+		GFF4688	0.57	-0.3
4,690,248	+		GFF4688	0.59	-1.0
4,690,248	+		GFF4688	0.59	+0.2
4,690,248	+		GFF4688	0.59	+1.0
4,690,248	+		GFF4688	0.59	+0.8
4,690,250	-		GFF4688	0.59	-1.8
4,690,250	-		GFF4688	0.59	-0.7
4,690,256	-		GFF4688	0.60	-0.2
4,690,262	-		GFF4688	0.60	+0.9
4,690,262	-		GFF4688	0.60	-0.8
4,690,281	-		GFF4688	0.62	+0.2
4,690,281	-		GFF4688	0.62	-1.1
4,690,292	-		GFF4688	0.63	-2.1
4,690,350	-		GFF4688	0.69	+2.0
4,690,361	+		GFF4688	0.70	+0.2
4,690,369	-		GFF4688	0.71	+0.8
4,690,369	-		GFF4688	0.71	+0.3
4,690,369	-		GFF4688	0.71	+0.2
4,690,373	-		GFF4688	0.71	-0.2
4,690,383	+		GFF4688	0.72	+0.2
4,690,383	+		GFF4688	0.72	+0.4
4,690,391	-		GFF4688	0.73	-0.4
4,690,408	+		GFF4688	0.75	+0.8
4,690,408	+		GFF4688	0.75	-0.2
4,690,408	+		GFF4688	0.75	-2.6
4,690,408	+		GFF4688	0.75	+0.5
4,690,416	-		GFF4688	0.76	+0.2
4,690,416	-		GFF4688	0.76	+0.4
4,690,416	-		GFF4688	0.76	-0.0
4,690,421	+		GFF4688	0.76	+1.3
4,690,424	-		GFF4688	0.76	-0.9
4,690,424	-		GFF4688	0.76	+0.3
4,690,443	-		GFF4688	0.78	-0.3
4,690,444	+		GFF4688	0.78	+0.7
4,690,444	+		GFF4688	0.78	+0.7
4,690,444	+		GFF4688	0.78	+0.8
4,690,444	+		GFF4688	0.78	+0.9
4,690,444	+		GFF4688	0.78	-0.4
4,690,448	-		GFF4688	0.79	+1.2
4,690,448	-		GFF4688	0.79	+0.2
4,690,448	-		GFF4688	0.79	+1.1
4,690,452	-		GFF4688	0.79	-1.0
4,690,452	-		GFF4688	0.79	-0.1
4,690,452	-		GFF4688	0.79	+0.2
4,690,458	-		GFF4688	0.80	-1.3
4,690,467	+		GFF4688	0.81	+0.3
4,690,467	+		GFF4688	0.81	+0.9
4,690,467	+		GFF4688	0.81	+0.4
4,690,467	+		GFF4688	0.81	+0.5
4,690,467	+		GFF4688	0.81	+0.5
4,690,467	+		GFF4688	0.81	+2.3
4,690,467	+		GFF4688	0.81	+1.2
4,690,492	+		GFF4688	0.83	-0.5
4,690,497	+		GFF4688	0.84	+0.2
4,690,497	+		GFF4688	0.84	-0.0
4,690,505	-		GFF4688	0.85	+1.0
4,690,519	+		GFF4688	0.86	+0.1
4,690,527	-		GFF4688	0.87	+0.1
4,690,553	+		GFF4688	0.89	-1.5
4,690,592	-				+0.6
4,690,599	+				+0.3
4,690,604	-				-0.5
4,690,616	+				-1.2
4,690,616	+				+0.8
4,690,616	+				+1.5
4,690,618	+				+0.2
4,690,618	+				-0.5
4,690,618	+				+1.3
4,690,624	-				+1.1
4,690,624	-				-0.1
4,690,626	-				-0.1
4,690,644	+				-1.2
4,690,658	+				+0.9
4,690,674	-				+0.3
4,690,735	-				+0.5
4,690,735	-				+0.9
4,690,744	-				-1.6
4,690,746	+				-0.8
4,690,746	+				-0.7
4,690,751	+				+0.1
4,690,751	+				-0.9
4,690,751	+				-0.2
4,690,751	+				+0.6
4,690,751	+				-0.5
4,690,751	+				-0.6
4,690,751	+				+1.1
4,690,751	+				-0.7
4,690,751	+				+0.7
4,690,751	+				+0.2
4,690,754	-				-0.4
4,690,759	-				+0.3
4,690,759	-				+0.4
4,690,759	-				+0.2
4,690,759	-				+0.2
4,690,759	-				+0.7
4,690,759	-				+1.6
4,690,775	+				+0.6
4,690,782	-				+0.9
4,690,794	+		GFF4689	0.10	+0.9
4,690,794	+		GFF4689	0.10	-0.6
4,690,794	+		GFF4689	0.10	-1.1
4,690,802	-		GFF4689	0.11	+0.8
4,690,802	-		GFF4689	0.11	+0.7
4,690,802	-		GFF4689	0.11	+0.4
4,690,825	+		GFF4689	0.13	+0.5
4,690,854	+		GFF4689	0.15	-0.6
4,690,863	+		GFF4689	0.16	+0.6
4,690,863	+		GFF4689	0.16	+0.7
4,690,863	+		GFF4689	0.16	-0.6
4,690,871	-		GFF4689	0.17	+1.1
4,690,875	-		GFF4689	0.17	+0.2
4,690,883	+		GFF4689	0.18	-0.0
4,690,896	-		GFF4689	0.19	+1.3
4,690,922	+		GFF4689	0.21	+0.3
4,690,926	+		GFF4689	0.21	+0.4
4,690,930	+		GFF4689	0.21	+0.5
4,690,936	+		GFF4689	0.22	-2.0
4,690,939	-		GFF4689	0.22	+0.9
4,690,941	+		GFF4689	0.22	+1.6
4,690,949	-		GFF4689	0.23	+0.4
4,690,959	+		GFF4689	0.24	-0.5
4,690,977	+		GFF4689	0.25	+0.4
4,690,982	-		GFF4689	0.26	+0.5
4,690,987	+		GFF4689	0.26	+1.1
4,690,987	+		GFF4689	0.26	-0.1
4,690,987	+		GFF4689	0.26	+0.2
4,690,987	+		GFF4689	0.26	+0.5
4,690,987	+		GFF4689	0.26	+0.5
4,690,987	+		GFF4689	0.26	+0.7
4,690,987	+		GFF4689	0.26	-1.8
4,690,992	+		GFF4689	0.26	-0.3
4,690,992	+		GFF4689	0.26	+1.0
4,690,992	+		GFF4689	0.26	+1.9
4,690,992	+		GFF4689	0.26	-2.2
4,690,992	+		GFF4689	0.26	-0.2
4,690,992	+		GFF4689	0.26	+1.2
4,690,992	+		GFF4689	0.26	-0.1
4,690,992	+		GFF4689	0.26	+0.3
4,690,995	-		GFF4689	0.27	+0.4
4,690,995	-		GFF4689	0.27	-0.2
4,690,995	-		GFF4689	0.27	-0.9
4,690,995	-		GFF4689	0.27	+0.8
4,690,997	+		GFF4689	0.27	+1.3
4,690,997	+		GFF4689	0.27	+0.5
4,690,997	+		GFF4689	0.27	+0.5
4,690,997	+		GFF4689	0.27	+0.4
4,690,997	+		GFF4689	0.27	+0.8
4,690,997	+		GFF4689	0.27	-0.6
4,690,997	+		GFF4689	0.27	+0.4
4,690,997	+		GFF4689	0.27	+0.1
4,690,997	+		GFF4689	0.27	-0.0
4,690,997	+		GFF4689	0.27	-1.8
4,690,997	+		GFF4689	0.27	-0.6
4,690,997	+		GFF4689	0.27	+0.3
4,690,997	+		GFF4689	0.27	+0.2
4,690,997	+		GFF4689	0.27	+0.5
4,690,997	+		GFF4689	0.27	+1.1
4,690,997	+		GFF4689	0.27	+0.8
4,690,997	+		GFF4689	0.27	-0.6
4,690,997	+		GFF4689	0.27	-0.1
4,691,000	-		GFF4689	0.27	+0.3
4,691,000	-		GFF4689	0.27	-0.0
4,691,000	-		GFF4689	0.27	+0.9
4,691,000	-		GFF4689	0.27	+1.2
4,691,000	-		GFF4689	0.27	+0.2
4,691,000	-		GFF4689	0.27	+1.0
4,691,003	+		GFF4689	0.27	-1.4
4,691,003	+		GFF4689	0.27	-1.5
4,691,004	+		GFF4689	0.27	+0.8
4,691,004	+		GFF4689	0.27	-0.6
4,691,004	+		GFF4689	0.27	+0.5
4,691,005	-		GFF4689	0.27	-0.2
4,691,005	-		GFF4689	0.27	+0.5
4,691,005	-		GFF4689	0.27	+1.3
4,691,005	-		GFF4689	0.27	+0.6
4,691,005	-		GFF4689	0.27	+0.7
4,691,005	-		GFF4689	0.27	+0.5
4,691,005	-		GFF4689	0.27	+1.8
4,691,005	-		GFF4689	0.27	-0.6
4,691,009	+		GFF4689	0.28	-0.3
4,691,011	-		GFF4689	0.28	-0.5
4,691,012	-		GFF4689	0.28	+0.1
4,691,012	-		GFF4689	0.28	+0.2
4,691,012	-		GFF4689	0.28	+0.5
4,691,012	-		GFF4689	0.28	+0.5
4,691,017	+		GFF4689	0.28	+0.9
4,691,017	+		GFF4689	0.28	+1.0
4,691,017	+		GFF4689	0.28	+0.9
4,691,017	+		GFF4689	0.28	-0.1
4,691,024	-		GFF4689	0.29	+0.9
4,691,025	-		GFF4689	0.29	-2.0
4,691,025	-		GFF4689	0.29	-2.0
4,691,057	-		GFF4689	0.32	+0.1
4,691,059	-		GFF4689	0.32	+0.9
4,691,140	+		GFF4689	0.38	-0.0
4,691,168	+		GFF4689	0.40	-1.8
4,691,189	-		GFF4689	0.42	+0.8
4,691,206	+		GFF4689	0.44	-0.5
4,691,206	+		GFF4689	0.44	-0.4
4,691,207	+		GFF4689	0.44	+0.4
4,691,207	+		GFF4689	0.44	+0.2
4,691,207	+		GFF4689	0.44	-0.6
4,691,212	+		GFF4689	0.44	+0.8
4,691,213	-		GFF4689	0.44	-1.1
4,691,215	-		GFF4689	0.44	+1.2
4,691,215	-		GFF4689	0.44	+1.2
4,691,215	-		GFF4689	0.44	+0.3
4,691,215	-		GFF4689	0.44	-0.7
4,691,217	+		GFF4689	0.44	+0.7
4,691,234	+		GFF4689	0.46	+0.1
4,691,251	+		GFF4689	0.47	+1.4
4,691,251	+		GFF4689	0.47	-0.7
4,691,251	+		GFF4689	0.47	-0.8
4,691,259	-		GFF4689	0.48	+0.6
4,691,272	-		GFF4689	0.49	-0.5
4,691,322	-		GFF4689	0.53	+0.5
4,691,322	-		GFF4689	0.53	+0.3
4,691,322	-		GFF4689	0.53	+0.5
4,691,344	-		GFF4689	0.55	+1.1
4,691,344	-		GFF4689	0.55	+0.4
4,691,346	-		GFF4689	0.55	-1.3
4,691,375	+		GFF4689	0.57	+0.2
4,691,383	-		GFF4689	0.58	+0.6
4,691,383	-		GFF4689	0.58	+1.5
4,691,393	+		GFF4689	0.59	+1.0
4,691,488	+		GFF4689	0.66	+0.3
4,691,488	+		GFF4689	0.66	-0.7
4,691,496	-		GFF4689	0.67	-1.0
4,691,496	-		GFF4689	0.67	+1.8
4,691,496	-		GFF4689	0.67	+0.8
4,691,496	-		GFF4689	0.67	+1.6
4,691,502	+		GFF4689	0.67	+0.9
4,691,535	+		GFF4689	0.70	+1.3
4,691,535	+		GFF4689	0.70	-0.1
4,691,543	-		GFF4689	0.71	-0.4
4,691,562	-		GFF4689	0.72	-1.0
4,691,564	+		GFF4689	0.72	-0.2
4,691,569	+		GFF4689	0.73	+0.8
4,691,572	-		GFF4689	0.73	-0.8
4,691,581	+		GFF4689	0.74	-0.1
4,691,589	-		GFF4689	0.74	-0.9
4,691,589	-		GFF4689	0.74	+0.3
4,691,591	+		GFF4689	0.75	-0.9
4,691,594	-		GFF4689	0.75	+0.2
4,691,599	+		GFF4689	0.75	-1.7
4,691,599	-		GFF4689	0.75	-1.5
4,691,599	-		GFF4689	0.75	-0.2
4,691,607	-		GFF4689	0.76	-1.7
4,691,607	-		GFF4689	0.76	-0.5
4,691,618	+		GFF4689	0.77	-0.8
4,691,633	-		GFF4689	0.78	-0.1
4,691,635	+		GFF4689	0.78	+1.1
4,691,642	+		GFF4689	0.79	+0.7
4,691,647	+		GFF4689	0.79	-0.3
4,691,649	+		GFF4689	0.79	+0.8
4,691,663	-		GFF4689	0.80	+0.3
4,691,676	+		GFF4689	0.81	-0.2
4,691,729	+		GFF4689	0.86	-0.1
4,691,762	-		GFF4689	0.88	-0.8
4,691,776	+		GFF4689	0.89	+1.1
4,691,776	+		GFF4689	0.89	-0.9
4,691,776	+		GFF4689	0.89	-0.0
4,691,776	+		GFF4689	0.89	+1.5
4,691,776	+		GFF4689	0.89	-0.3
4,691,776	+		GFF4689	0.89	+0.9
4,691,776	+		GFF4689	0.89	+0.1
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