Strain Fitness in Sphingobium sp. HT1-2 around GFF4678

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,673,662	+		GFF4676	0.71	+0.9
4,673,666	+		GFF4676	0.72	-0.1
4,673,685	-		GFF4676	0.74	+3.0
4,673,756	+		GFF4676	0.82	-1.4
4,673,762	+		GFF4676	0.82	+0.3
4,673,793	+		GFF4676	0.86	-0.8
4,673,793	+		GFF4676	0.86	+0.2
4,673,793	+		GFF4676	0.86	+0.2
4,673,810	+		GFF4676	0.88	+2.6
4,673,830	+				-0.4
4,673,872	+				-1.7
4,673,886	+				+0.3
4,673,908	+				+0.3
4,673,908	+				+1.0
4,673,909	-				+1.2
4,673,916	-				+0.3
4,673,916	-				+1.2
4,673,916	-				+0.9
4,673,964	+				+1.8
4,674,011	-		GFF4677	0.12	-0.7
4,674,017	+		GFF4677	0.13	+0.2
4,674,021	+		GFF4677	0.13	+1.4
4,674,031	+		GFF4677	0.14	-1.3
4,674,039	-		GFF4677	0.16	+1.0
4,674,102	+		GFF4677	0.24	+0.7
4,674,181	+		GFF4677	0.35	+0.7
4,674,181	+		GFF4677	0.35	+0.2
4,674,186	+		GFF4677	0.36	-0.8
4,674,189	-		GFF4677	0.36	-0.4
4,674,189	-		GFF4677	0.36	+0.2
4,674,189	-		GFF4677	0.36	+0.4
4,674,199	-		GFF4677	0.37	-0.8
4,674,213	-		GFF4677	0.39	+0.8
4,674,267	-		GFF4677	0.47	-1.3
4,674,321	+		GFF4677	0.54	+0.6
4,674,323	+		GFF4677	0.54	-0.4
4,674,341	+		GFF4677	0.57	+2.2
4,674,409	-		GFF4677	0.66	-1.3
4,674,433	-		GFF4677	0.69	-0.0
4,674,468	-		GFF4677	0.74	-1.0
4,674,476	+		GFF4677	0.75	-0.3
4,674,476	+		GFF4677	0.75	+1.3
4,674,510	+		GFF4677	0.80	+0.2
4,674,510	+		GFF4677	0.80	+0.5
4,674,513	-		GFF4677	0.80	-0.6
4,674,515	+		GFF4677	0.81	+0.4
4,674,515	+		GFF4677	0.81	+0.7
4,674,515	+		GFF4677	0.81	+0.2
4,674,515	+		GFF4677	0.81	+0.2
4,674,515	+		GFF4677	0.81	-1.2
4,674,523	-		GFF4677	0.82	+0.3
4,674,523	-		GFF4677	0.82	-1.3
4,674,525	+		GFF4677	0.82	+1.8
4,674,525	+		GFF4677	0.82	+0.6
4,674,528	-		GFF4677	0.82	-0.3
4,674,528	-		GFF4677	0.82	+0.3
4,674,535	+		GFF4677	0.83	-1.0
4,674,538	-		GFF4677	0.84	-0.8
4,674,574	-		GFF4677	0.89	-0.4
4,674,601	-				-2.4
4,674,634	-				-1.3
4,674,673	+				+0.3
4,674,681	-				-2.1
4,674,692	+				-2.3
4,674,721	+				+0.3
4,674,721	-				-1.0
4,674,773	+				+0.7
4,674,818	-		GFF4678	0.11	+0.4
4,674,818	-		GFF4678	0.11	+0.7
4,674,943	+		GFF4678	0.19	+0.4
4,674,990	+		GFF4678	0.22	+0.9
4,675,142	+		GFF4678	0.32	+0.6
4,675,209	+		GFF4678	0.37	+0.4
4,675,217	-		GFF4678	0.37	-1.4
4,675,220	+		GFF4678	0.38	+0.5
4,675,369	+		GFF4678	0.48	+0.8
4,675,379	+		GFF4678	0.48	-1.6
4,675,384	+		GFF4678	0.49	+0.2
4,675,388	+		GFF4678	0.49	+1.0
4,675,389	+		GFF4678	0.49	+1.3
4,675,389	+		GFF4678	0.49	-0.4
4,675,389	+		GFF4678	0.49	-0.5
4,675,389	+		GFF4678	0.49	+0.3
4,675,389	+		GFF4678	0.49	-1.3
4,675,389	+		GFF4678	0.49	+0.5
4,675,389	+		GFF4678	0.49	+0.3
4,675,389	+		GFF4678	0.49	-1.0
4,675,389	+		GFF4678	0.49	+0.4
4,675,394	+		GFF4678	0.49	-0.0
4,675,394	+		GFF4678	0.49	-0.3
4,675,394	+		GFF4678	0.49	+0.1
4,675,394	+		GFF4678	0.49	-0.9
4,675,394	+		GFF4678	0.49	-0.2
4,675,395	-		GFF4678	0.49	-0.7
4,675,395	-		GFF4678	0.49	-0.8
4,675,397	-		GFF4678	0.50	+1.6
4,675,397	-		GFF4678	0.50	+1.0
4,675,397	-		GFF4678	0.50	+0.9
4,675,397	-		GFF4678	0.50	+0.2
4,675,397	-		GFF4678	0.50	+0.7
4,675,401	+		GFF4678	0.50	-0.4
4,675,401	+		GFF4678	0.50	+1.1
4,675,401	+		GFF4678	0.50	+0.7
4,675,402	-		GFF4678	0.50	-0.1
4,675,402	-		GFF4678	0.50	+0.8
4,675,402	-		GFF4678	0.50	-1.7
4,675,407	-		GFF4678	0.50	+1.6
4,675,409	-		GFF4678	0.50	+0.5
4,675,409	-		GFF4678	0.50	+0.1
4,675,420	+		GFF4678	0.51	+0.2
4,675,433	-		GFF4678	0.52	+0.1
4,675,433	-		GFF4678	0.52	-1.2
4,675,438	-		GFF4678	0.52	+0.2
4,675,443	-		GFF4678	0.53	+0.8
4,675,464	+		GFF4678	0.54	+0.8
4,675,472	-		GFF4678	0.55	+0.8
4,675,477	-		GFF4678	0.55	+0.2
4,675,494	-		GFF4678	0.56	+0.8
4,675,599	+		GFF4678	0.63	+0.6
4,675,599	+		GFF4678	0.63	+0.5
4,675,599	+		GFF4678	0.63	-0.3
4,675,599	+		GFF4678	0.63	+1.7
4,675,607	-		GFF4678	0.64	+0.7
4,675,622	-		GFF4678	0.65	+1.2
4,675,650	-		GFF4678	0.66	+1.6
4,675,672	-		GFF4678	0.68	-0.7
4,675,684	+		GFF4678	0.69	+0.3
4,675,684	+		GFF4678	0.69	-0.2
4,675,684	+		GFF4678	0.69	-0.0
4,675,692	-		GFF4678	0.69	-0.7
4,675,692	-		GFF4678	0.69	+0.6
4,675,702	-		GFF4678	0.70	+2.1
4,675,719	+		GFF4678	0.71	-0.2
4,675,727	-		GFF4678	0.72	+0.9
4,675,727	-		GFF4678	0.72	-0.2
4,675,727	-		GFF4678	0.72	+0.2
4,675,727	-		GFF4678	0.72	-0.8
4,675,727	-		GFF4678	0.72	-1.0
4,675,732	-		GFF4678	0.72	-0.3
4,675,732	-		GFF4678	0.72	+0.4
4,675,848	-		GFF4678	0.80	+0.5
4,675,851	+		GFF4678	0.80	+0.4
4,675,896	-		GFF4678	0.83	+0.6
4,675,896	-		GFF4678	0.83	+0.5
4,675,908	+		GFF4678	0.84	+0.8
4,675,908	+		GFF4678	0.84	-0.3
4,675,944	+		GFF4678	0.86	-0.4
4,675,944	+		GFF4678	0.86	+2.5
4,675,952	-		GFF4678	0.87	+0.5
4,676,143	-				+0.9
4,676,198	+				+0.6
4,676,237	-				+1.3
4,676,243	-				+0.8
4,676,268	+		GFF4679	0.11	+0.5
4,676,273	-		GFF4679	0.11	+0.7
4,676,278	+		GFF4679	0.12	-0.2
4,676,278	+		GFF4679	0.12	-0.7
4,676,294	+		GFF4679	0.13	+2.0
4,676,312	+		GFF4679	0.15	+1.0
4,676,312	+		GFF4679	0.15	+1.1
4,676,320	-		GFF4679	0.16	-1.7
4,676,320	-		GFF4679	0.16	+0.1
4,676,320	-		GFF4679	0.16	+0.8
4,676,326	+		GFF4679	0.16	+0.7
4,676,326	+		GFF4679	0.16	+1.3
4,676,326	+		GFF4679	0.16	-0.9
4,676,393	+		GFF4679	0.23	-1.1
4,676,393	+		GFF4679	0.23	+0.1
4,676,401	-		GFF4679	0.24	+0.5
4,676,428	-		GFF4679	0.26	+0.7
4,676,444	-		GFF4679	0.28	+1.1
4,676,444	-		GFF4679	0.28	+0.2
4,676,451	+		GFF4679	0.29	-0.2
4,676,469	-		GFF4679	0.30	+0.9
4,676,499	+		GFF4679	0.33	+0.3
4,676,514	+		GFF4679	0.35	+0.6
4,676,517	-		GFF4679	0.35	+1.0
4,676,536	+		GFF4679	0.37	-0.9
4,676,536	+		GFF4679	0.37	-0.3
4,676,536	+		GFF4679	0.37	+0.9
4,676,536	+		GFF4679	0.37	+0.1
4,676,536	+		GFF4679	0.37	-0.2
4,676,544	+		GFF4679	0.38	-0.8
4,676,592	+		GFF4679	0.43	-0.6
4,676,612	+		GFF4679	0.45	+0.5
4,676,659	+		GFF4679	0.49	-0.1
4,676,659	+		GFF4679	0.49	+1.0
4,676,679	+		GFF4679	0.51	+1.1
4,676,699	+		GFF4679	0.53	+0.8
4,676,699	+		GFF4679	0.53	-0.9
4,676,702	-		GFF4679	0.53	-0.3
4,676,702	-		GFF4679	0.53	-1.1
4,676,704	+		GFF4679	0.54	-1.6
4,676,704	+		GFF4679	0.54	+0.4
4,676,707	-		GFF4679	0.54	+0.6
4,676,712	-		GFF4679	0.54	-0.9
4,676,712	-		GFF4679	0.54	+0.8
4,676,712	-		GFF4679	0.54	-1.2
4,676,806	+		GFF4679	0.64	+1.2
4,676,814	+		GFF4679	0.64	-0.6
4,676,833	+		GFF4679	0.66	+0.7
4,676,852	+		GFF4679	0.68	+1.7
4,676,888	+		GFF4679	0.72	+0.7
4,676,896	-		GFF4679	0.72	+2.0
4,676,896	-		GFF4679	0.72	+1.0
4,676,896	-		GFF4679	0.72	-0.4
4,676,896	-		GFF4679	0.72	+1.0
4,676,896	-		GFF4679	0.72	+0.9
4,676,909	+		GFF4679	0.74	+1.1
4,676,909	+		GFF4679	0.74	+1.1
4,676,914	+		GFF4679	0.74	+1.3
4,676,914	+		GFF4679	0.74	+1.1
4,676,917	-		GFF4679	0.75	+0.6
4,676,919	+		GFF4679	0.75	+0.5
4,676,922	-		GFF4679	0.75	-0.9
4,676,922	-		GFF4679	0.75	+0.1
4,676,922	-		GFF4679	0.75	-1.2
4,676,922	-		GFF4679	0.75	-0.2
4,677,017	+		GFF4679	0.84	+0.1
4,677,017	+		GFF4679	0.84	+0.3
4,677,056	+		GFF4679	0.88	-1.7
4,677,061	+		GFF4679	0.89	-0.1
4,677,061	+		GFF4679	0.89	+0.9
4,677,061	+		GFF4679	0.89	-2.2
4,677,063	+		GFF4679	0.89	+0.6
4,677,063	+		GFF4679	0.89	+0.5
4,677,071	+		GFF4679	0.90	-0.7
4,677,074	-				+1.1
4,677,125	-				+0.1
4,677,129	+				+1.5
4,677,129	+				+0.1
4,677,134	+				-0.9