Strain Fitness in Sphingobium sp. HT1-2 around GFF4564

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,556,047	-				-1.7
4,556,047	-				+0.1
4,556,774	-				-1.5
4,556,774	-				-0.0
4,556,819	-				+0.5
4,556,838	+				-0.6
4,556,865	-				-1.2
4,556,865	-				-0.9
4,556,865	-				+0.4
4,556,871	+				-0.9
4,556,877	+				+0.1
4,556,890	-				+0.9
4,556,909	+				+0.5
4,556,918	-				+0.3
4,556,919	+				-0.9
4,556,925	+		GFF4564	0.10	-1.1
4,556,925	+		GFF4564	0.10	+0.1
4,556,925	+		GFF4564	0.10	-1.2
4,556,925	+		GFF4564	0.10	-0.3
4,556,925	+		GFF4564	0.10	+0.4
4,556,925	+		GFF4564	0.10	+0.1
4,556,925	+		GFF4564	0.10	-1.9
4,556,925	+		GFF4564	0.10	-0.0
4,556,925	+		GFF4564	0.10	-2.8
4,556,927	+		GFF4564	0.10	+0.8
4,556,927	+		GFF4564	0.10	-0.5
4,556,927	+		GFF4564	0.10	+0.5
4,556,933	-		GFF4564	0.11	-0.2
4,556,933	-		GFF4564	0.11	-0.3
4,556,933	-		GFF4564	0.11	+0.0
4,556,933	-		GFF4564	0.11	-0.9
4,556,933	-		GFF4564	0.11	-1.3
4,556,933	-		GFF4564	0.11	+1.1
4,556,937	+		GFF4564	0.11	+0.9
4,556,937	+		GFF4564	0.11	-0.7
4,556,937	+		GFF4564	0.11	+1.1
4,556,945	-		GFF4564	0.11	+0.0
4,556,945	-		GFF4564	0.11	+1.4
4,556,945	-		GFF4564	0.11	+1.1
4,556,947	+		GFF4564	0.11	+0.0
4,556,975	+		GFF4564	0.13	-0.3
4,556,983	-		GFF4564	0.14	-0.5
4,556,990	-		GFF4564	0.14	+0.3
4,556,990	-		GFF4564	0.14	+1.3
4,557,040	-		GFF4564	0.17	-0.3
4,557,046	+		GFF4564	0.18	-1.9
4,557,056	+		GFF4564	0.18	+0.5
4,557,056	+		GFF4564	0.18	+0.3
4,557,064	-		GFF4564	0.19	+0.6
4,557,085	+		GFF4564	0.20	-2.0
4,557,085	-		GFF4564	0.20	+0.1
4,557,112	-		GFF4564	0.22	-2.9
4,557,114	+		GFF4564	0.22	+1.4
4,557,114	+		GFF4564	0.22	-0.9
4,557,114	+		GFF4564	0.22	+0.7
4,557,114	+		GFF4564	0.22	+2.1
4,557,114	+		GFF4564	0.22	-1.0
4,557,119	+		GFF4564	0.23	-1.8
4,557,127	-		GFF4564	0.23	-0.6
4,557,140	-		GFF4564	0.24	-0.4
4,557,185	-		GFF4564	0.27	-0.7
4,557,200	+		GFF4564	0.28	+1.1
4,557,200	+		GFF4564	0.28	+0.7
4,557,208	-		GFF4564	0.28	-1.9
4,557,224	+		GFF4564	0.29	+1.2
4,557,231	-		GFF4564	0.30	-0.8
4,557,234	+		GFF4564	0.30	+0.1
4,557,248	-		GFF4564	0.31	+0.7
4,557,249	-		GFF4564	0.31	-0.5
4,557,249	-		GFF4564	0.31	-0.9
4,557,262	+		GFF4564	0.32	+0.7
4,557,289	+		GFF4564	0.33	-0.6
4,557,289	+		GFF4564	0.33	+0.4
4,557,297	-		GFF4564	0.34	+1.1
4,557,297	-		GFF4564	0.34	+1.3
4,557,297	-		GFF4564	0.34	+1.5
4,557,297	-		GFF4564	0.34	+1.8
4,557,297	-		GFF4564	0.34	+0.5
4,557,297	-		GFF4564	0.34	+0.9
4,557,302	+		GFF4564	0.34	+1.2
4,557,337	-		GFF4564	0.36	+0.5
4,557,523	+		GFF4564	0.48	+0.1
4,557,547	+		GFF4564	0.50	-0.1
4,557,547	+		GFF4564	0.50	-1.6
4,557,555	-		GFF4564	0.50	-1.7
4,557,581	-		GFF4564	0.52	-0.5
4,557,610	-		GFF4564	0.54	+0.4
4,557,610	-		GFF4564	0.54	-0.6
4,557,621	-		GFF4564	0.55	-0.1
4,557,729	-		GFF4564	0.62	-0.1
4,557,772	+		GFF4564	0.64	+0.3
4,557,782	+		GFF4564	0.65	+1.2
4,557,782	+		GFF4564	0.65	-1.5
4,557,790	-		GFF4564	0.66	-1.8
4,557,790	-		GFF4564	0.66	+0.2
4,557,790	-		GFF4564	0.66	+0.8
4,557,800	+		GFF4564	0.66	-0.9
4,557,808	-		GFF4564	0.67	+0.1
4,557,836	+		GFF4564	0.68	+0.4
4,557,841	+		GFF4564	0.69	-0.9
4,557,844	-		GFF4564	0.69	-0.9
4,557,854	-		GFF4564	0.70	+1.0
4,557,874	+		GFF4564	0.71	+0.1
4,557,876	-		GFF4564	0.71	-0.5
4,557,918	+		GFF4564	0.74	+0.7
4,557,925	+		GFF4564	0.74	+0.0
4,557,943	-		GFF4564	0.75	+1.4
4,557,943	-		GFF4564	0.75	+0.7
4,557,946	+		GFF4564	0.76	-1.3
4,557,951	+		GFF4564	0.76	-0.1
4,557,954	-		GFF4564	0.76	+0.8
4,557,954	-		GFF4564	0.76	-1.3
4,557,967	-		GFF4564	0.77	+1.1
4,557,977	+		GFF4564	0.78	-2.3
4,557,985	-		GFF4564	0.78	+1.3
4,557,985	-		GFF4564	0.78	-0.3
4,557,989	-		GFF4564	0.78	-0.9
4,557,991	+		GFF4564	0.78	+0.8
4,557,992	+		GFF4564	0.78	-1.4
4,557,997	+		GFF4564	0.79	+1.3
4,558,005	-		GFF4564	0.79	-0.6
4,558,005	-		GFF4564	0.79	-0.9
4,558,031	-		GFF4564	0.81	-0.4
4,558,041	+		GFF4564	0.82	-1.1
4,558,062	-		GFF4564	0.83	+1.2
4,558,071	-		GFF4564	0.84	+0.4
4,558,121	+		GFF4564	0.87	-0.4
4,558,124	-		GFF4564	0.87	-0.0
4,558,128	+		GFF4564	0.87	-0.3
4,558,129	-		GFF4564	0.87	-1.0
4,558,129	-		GFF4564	0.87	-1.2
4,558,129	-		GFF4564	0.87	-0.5
4,558,129	-		GFF4564	0.87	-1.2
4,558,129	-		GFF4564	0.87	+0.3
4,558,129	-		GFF4564	0.87	-1.5
4,558,129	-		GFF4564	0.87	+0.3
4,558,157	+		GFF4564	0.89	-0.5
4,558,178	-				-1.5
4,558,191	+				-0.7
4,558,201	+				-0.5
4,558,201	+				-0.4
4,558,206	-				-0.6
4,558,210	+				+1.6
4,558,233	+				-0.7
4,558,238	+				+0.6
4,558,241	-				-0.7
4,558,246	-				+0.3
4,558,255	+				-0.7
4,558,255	+				-0.5
4,558,255	+				-1.1
4,558,260	+				-1.5
4,558,260	+				+0.1
4,558,263	-				+0.4
4,558,268	-				+0.1
4,558,268	-				-2.3
4,558,268	-				-0.3
4,558,308	-				+0.5
4,558,421	-		GFF4565	0.68	-3.6
4,558,437	+		GFF4565	0.82	-0.8
4,558,437	+		GFF4565	0.82	-1.4
4,558,437	+		GFF4565	0.82	+0.4
4,558,458	+				-1.0
4,558,470	+				-1.0
4,558,470	+				-1.4
4,558,470	+				+0.7
4,558,470	+				-0.1
4,558,470	+				+0.9
4,558,470	+				-2.2
4,558,478	-				-0.2
4,558,478	-				-0.5
4,558,478	-				-0.5
4,558,478	-				-1.6
4,558,478	-				-0.4
4,558,478	-				-0.4
4,558,489	+				+0.4
4,558,497	-				-0.4
4,558,507	+				-1.1
4,558,509	+				+0.4
4,558,509	+				-1.1
4,558,509	+				+0.4
4,558,517	-				-0.4
4,558,517	-				-0.2
4,558,517	-				+0.3
4,558,517	-				+1.0
4,558,517	-				+0.5
4,558,520	+				-0.2
4,558,567	+		GFF4566	0.10	+1.0
4,558,567	+		GFF4566	0.10	+0.2
4,558,567	+		GFF4566	0.10	+0.7
4,558,567	+		GFF4566	0.10	+0.0
4,558,567	+		GFF4566	0.10	+0.9
4,558,567	+		GFF4566	0.10	-0.6
4,558,567	+		GFF4566	0.10	-0.9
4,558,567	+		GFF4566	0.10	-1.1
4,558,567	+		GFF4566	0.10	-1.7
4,558,575	-		GFF4566	0.11	-1.5
4,558,575	-		GFF4566	0.11	-0.3
4,558,575	-		GFF4566	0.11	-0.5
4,558,575	-		GFF4566	0.11	-0.6
4,558,575	-		GFF4566	0.11	-0.1
4,558,575	-		GFF4566	0.11	-0.6
4,558,575	-		GFF4566	0.11	-1.5
4,558,575	-		GFF4566	0.11	+0.1
4,558,575	-		GFF4566	0.11	+0.1
4,558,575	-		GFF4566	0.11	-0.2
4,558,575	-		GFF4566	0.11	-0.7
4,558,586	+		GFF4566	0.12	+0.8
4,558,591	+		GFF4566	0.13	+0.2
4,558,601	+		GFF4566	0.14	-0.2
4,558,730	-		GFF4566	0.25	-1.4
4,558,746	+		GFF4566	0.27	-0.9
4,558,749	-		GFF4566	0.27	-0.7
4,558,807	-		GFF4566	0.33	+0.6
4,558,826	+		GFF4566	0.34	-0.1
4,558,844	+		GFF4566	0.36	-1.2
4,558,852	-		GFF4566	0.37	+0.5
4,558,856	-		GFF4566	0.37	+0.5
4,558,924	-		GFF4566	0.43	-1.8
4,558,924	-		GFF4566	0.43	-1.4
4,558,940	-		GFF4566	0.45	-0.4
4,558,950	-		GFF4566	0.46	-0.1
4,558,959	-		GFF4566	0.46	-0.5
4,558,964	-		GFF4566	0.47	-1.3
4,558,997	-		GFF4566	0.50	-0.2
4,559,054	+		GFF4566	0.55	-0.4
4,559,054	+		GFF4566	0.55	+0.5
4,559,062	-		GFF4566	0.56	+0.7
4,559,076	-		GFF4566	0.57	-1.2
4,559,081	-		GFF4566	0.58	-1.4
4,559,090	+		GFF4566	0.58	+0.9
4,559,100	+		GFF4566	0.59	-0.5
4,559,100	+		GFF4566	0.59	-1.4
4,559,100	+		GFF4566	0.59	-0.9
4,559,108	-		GFF4566	0.60	+0.8
4,559,122	+		GFF4566	0.61	-0.3
4,559,158	+		GFF4566	0.65	-0.5
4,559,192	-		GFF4566	0.68	-2.5
4,559,242	-		GFF4566	0.72	-0.4
4,559,267	+		GFF4566	0.75	-0.5
4,559,275	-		GFF4566	0.75	-1.7