Strain Fitness in Sphingobium sp. HT1-2 around GFF4535

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,526,501	+		GFF4534	0.55	-0.4
4,526,510	+		GFF4534	0.55	+0.7
4,526,518	+		GFF4534	0.56	+0.5
4,526,518	-		GFF4534	0.56	+1.0
4,526,520	+		GFF4534	0.56	+1.0
4,526,520	+		GFF4534	0.56	+0.4
4,526,523	+		GFF4534	0.56	+0.8
4,526,526	-		GFF4534	0.56	-1.2
4,526,526	-		GFF4534	0.56	+0.6
4,526,526	-		GFF4534	0.56	-0.7
4,526,528	-		GFF4534	0.56	-0.7
4,526,538	-		GFF4534	0.57	-2.3
4,526,538	-		GFF4534	0.57	-0.3
4,526,538	-		GFF4534	0.57	-2.0
4,526,557	+		GFF4534	0.58	-2.0
4,526,565	-		GFF4534	0.59	-2.1
4,526,575	-		GFF4534	0.59	+0.8
4,526,619	+		GFF4534	0.62	-1.5
4,526,619	+		GFF4534	0.62	-0.4
4,526,652	+		GFF4534	0.64	-0.1
4,526,654	-		GFF4534	0.64	-0.1
4,526,666	-		GFF4534	0.65	-0.1
4,526,674	-		GFF4534	0.65	+0.4
4,526,691	-		GFF4534	0.66	-1.5
4,526,693	-		GFF4534	0.66	-0.5
4,526,711	-		GFF4534	0.67	-0.1
4,526,711	-		GFF4534	0.67	+0.2
4,526,722	+		GFF4534	0.68	-0.9
4,526,722	+		GFF4534	0.68	-0.3
4,526,730	-		GFF4534	0.68	+1.6
4,526,732	+		GFF4534	0.69	+0.7
4,526,758	-		GFF4534	0.70	-1.3
4,526,761	+		GFF4534	0.70	-0.9
4,526,764	-		GFF4534	0.71	-1.1
4,526,769	-		GFF4534	0.71	-0.8
4,526,795	+		GFF4534	0.72	+1.2
4,526,798	-		GFF4534	0.73	-2.4
4,526,798	-		GFF4534	0.73	+0.1
4,526,798	-		GFF4534	0.73	-0.7
4,526,800	+		GFF4534	0.73	-0.8
4,526,800	+		GFF4534	0.73	-1.4
4,526,805	+		GFF4534	0.73	-1.5
4,526,808	-		GFF4534	0.73	-0.6
4,526,808	-		GFF4534	0.73	-3.1
4,526,808	-		GFF4534	0.73	-0.2
4,526,823	+		GFF4534	0.74	+0.6
4,526,849	+		GFF4534	0.76	+0.6
4,526,857	-		GFF4534	0.76	-1.4
4,526,861	+		GFF4534	0.76	+0.2
4,526,866	+		GFF4534	0.77	-0.8
4,526,866	+		GFF4534	0.77	-0.2
4,526,874	-		GFF4534	0.77	-0.5
4,526,898	-		GFF4534	0.79	-1.8
4,526,936	+		GFF4534	0.81	-0.2
4,526,950	+		GFF4534	0.82	-1.0
4,526,999	+		GFF4534	0.85	-2.6
4,526,999	+		GFF4534	0.85	-2.3
4,527,017	+		GFF4534	0.86	+0.0
4,527,036	+		GFF4534	0.87	-0.8
4,527,060	-		GFF4534	0.88	-0.0
4,527,072	-		GFF4534	0.89	-1.4
4,527,072	-		GFF4534	0.89	+1.0
4,527,093	+				-2.4
4,527,108	+				-0.9
4,527,108	+				+0.9
4,527,109	-				+0.5
4,527,116	-				-0.5
4,527,116	-				+0.5
4,527,121	+				-1.4
4,527,126	+				+0.6
4,527,126	+				-1.7
4,527,143	-				-1.7
4,527,163	+				-0.2
4,527,163	+				+0.3
4,527,165	+				+0.3
4,527,172	+				-1.8
4,527,173	-				+0.5
4,527,177	+				-1.7
4,527,180	-				-1.9
4,527,180	-				-0.9
4,527,184	+				-0.3
4,527,189	+				+0.5
4,527,190	-				-2.0
4,527,192	-				-0.8
4,527,197	-				-0.2
4,527,204	+				-0.1
4,527,214	-				-0.0
4,527,217	+				-0.3
4,527,217	+				+0.1
4,527,225	-				-1.4
4,527,225	-				-0.8
4,527,252	-				-1.2
4,527,267	+				-0.2
4,527,267	+				-0.2
4,527,269	+				-0.8
4,527,272	+				-0.3
4,527,272	-				-1.0
4,527,275	-				-0.5
4,527,275	-				+0.8
4,527,275	-				+0.2
4,527,282	+				+0.4
4,527,282	-				-2.0
4,527,301	-				-0.4
4,527,308	+				-0.1
4,527,315	+				+0.6
4,527,325	+				-0.0
4,527,351	+				-2.4
4,527,370	+				-2.1
4,527,370	+				-1.1
4,527,370	+				+0.2
4,527,378	-				-1.9
4,527,378	-				-1.7
4,527,378	-				-1.2
4,527,378	-				-0.5
4,527,380	-				+0.3
4,527,411	-				+0.2
4,527,449	-				-0.3
4,527,449	-				-0.3
4,527,509	+				-2.1
4,527,510	+				+1.1
4,527,510	+				+0.2
4,527,510	+				+0.1
4,527,523	-				+0.5
4,527,573	-				-0.0
4,527,585	+				-0.5
4,527,588	+				+0.5
4,527,593	-				-0.2
4,527,593	-				+0.6
4,527,593	-				+1.7
4,527,598	-				-1.2
4,527,644	+		GFF4535	0.13	+0.3
4,527,648	+		GFF4535	0.14	+0.2
4,527,648	+		GFF4535	0.14	-0.1
4,527,648	+		GFF4535	0.14	-0.4
4,527,656	-		GFF4535	0.15	-0.5
4,527,656	-		GFF4535	0.15	-0.7
4,527,656	-		GFF4535	0.15	-1.5
4,527,702	+		GFF4535	0.19	-0.7
4,527,751	+		GFF4535	0.23	-1.1
4,527,754	-		GFF4535	0.24	-0.5
4,527,774	-		GFF4535	0.25	+1.3
4,527,816	-		GFF4535	0.29	+0.0
4,527,827	+		GFF4535	0.30	-2.0
4,527,847	-		GFF4535	0.32	-0.3
4,527,857	+		GFF4535	0.33	-1.7
4,527,865	-		GFF4535	0.34	-1.0
4,527,959	+		GFF4535	0.43	+0.4
4,527,967	-		GFF4535	0.43	-1.3
4,527,973	-		GFF4535	0.44	+0.4
4,527,980	-		GFF4535	0.45	+0.2
4,527,998	+		GFF4535	0.46	-0.2
4,528,003	+		GFF4535	0.47	+0.6
4,528,003	+		GFF4535	0.47	-0.5
4,528,028	+		GFF4535	0.49	-0.4
4,528,068	+		GFF4535	0.53	+0.0
4,528,068	+		GFF4535	0.53	-2.1
4,528,076	-		GFF4535	0.53	+1.0
4,528,076	-		GFF4535	0.53	+0.8
4,528,076	-		GFF4535	0.53	-1.1
4,528,076	-		GFF4535	0.53	-0.8
4,528,076	-		GFF4535	0.53	-0.8
4,528,076	-		GFF4535	0.53	+0.9
4,528,086	+		GFF4535	0.54	-0.9
4,528,089	+		GFF4535	0.55	-0.1
4,528,110	+		GFF4535	0.57	-2.1
4,528,111	+		GFF4535	0.57	+0.0
4,528,127	+		GFF4535	0.58	-2.1
4,528,132	+		GFF4535	0.59	-1.0
4,528,132	+		GFF4535	0.59	-2.2
4,528,152	+		GFF4535	0.60	-1.0
4,528,152	+		GFF4535	0.60	+0.6
4,528,152	+		GFF4535	0.60	-1.0
4,528,160	-		GFF4535	0.61	-1.6
4,528,170	+		GFF4535	0.62	+1.2
4,528,170	+		GFF4535	0.62	-0.8
4,528,170	+		GFF4535	0.62	-0.8
4,528,178	-		GFF4535	0.63	-0.6
4,528,185	-		GFF4535	0.63	-0.4
4,528,187	+		GFF4535	0.64	+0.6
4,528,187	+		GFF4535	0.64	-1.7
4,528,187	+		GFF4535	0.64	+0.2
4,528,187	+		GFF4535	0.64	+0.6
4,528,195	-		GFF4535	0.64	-1.2
4,528,195	-		GFF4535	0.64	+0.4
4,528,195	-		GFF4535	0.64	+0.2
4,528,202	+		GFF4535	0.65	-1.2
4,528,202	+		GFF4535	0.65	-0.9
4,528,202	+		GFF4535	0.65	-1.4
4,528,202	+		GFF4535	0.65	+0.7
4,528,202	+		GFF4535	0.65	+0.1
4,528,202	+		GFF4535	0.65	-0.9
4,528,202	+		GFF4535	0.65	+1.2
4,528,202	+		GFF4535	0.65	-1.0
4,528,202	+		GFF4535	0.65	-0.5
4,528,202	+		GFF4535	0.65	-0.9
4,528,202	+		GFF4535	0.65	-0.3
4,528,202	+		GFF4535	0.65	+0.0
4,528,202	+		GFF4535	0.65	-2.3
4,528,210	-		GFF4535	0.66	-0.3
4,528,210	-		GFF4535	0.66	-0.8
4,528,210	-		GFF4535	0.66	-3.0
4,528,210	-		GFF4535	0.66	-1.8
4,528,210	-		GFF4535	0.66	-0.6
4,528,210	-		GFF4535	0.66	+0.7
4,528,210	-		GFF4535	0.66	+0.5
4,528,210	-		GFF4535	0.66	-2.8
4,528,210	-		GFF4535	0.66	+0.7
4,528,210	-		GFF4535	0.66	-2.5
4,528,210	-		GFF4535	0.66	-0.0
4,528,210	-		GFF4535	0.66	-0.7
4,528,210	-		GFF4535	0.66	-0.0
4,528,210	-		GFF4535	0.66	-0.7
4,528,225	+		GFF4535	0.67	-0.6
4,528,239	+		GFF4535	0.68	-2.1
4,528,245	+		GFF4535	0.69	-0.0
4,528,245	+		GFF4535	0.69	-0.9
4,528,247	-		GFF4535	0.69	-0.5
4,528,250	+		GFF4535	0.69	-0.2
4,528,250	+		GFF4535	0.69	-1.4
4,528,253	-		GFF4535	0.70	-1.1
4,528,261	+		GFF4535	0.70	+0.1
4,528,262	-		GFF4535	0.71	-0.6
4,528,279	-		GFF4535	0.72	-0.1
4,528,304	+		GFF4535	0.74	-1.1
4,528,312	-		GFF4535	0.75	-0.1
4,528,312	-		GFF4535	0.75	-0.4
4,528,312	-		GFF4535	0.75	-0.3
4,528,325	-		GFF4535	0.76	-0.7
4,528,338	+		GFF4535	0.78	+0.3
4,528,343	+		GFF4535	0.78	-0.7
4,528,343	+		GFF4535	0.78	-2.1
4,528,343	+		GFF4535	0.78	-0.7
4,528,350	+		GFF4535	0.79	-1.5
4,528,355	+		GFF4535	0.79	-0.7
4,528,355	+		GFF4535	0.79	+0.0
4,528,355	+		GFF4535	0.79	-0.3
4,528,356	+		GFF4535	0.79	-2.9
4,528,357	-		GFF4535	0.79	+0.0
4,528,357	-		GFF4535	0.79	+1.0
4,528,357	-		GFF4535	0.79	-1.1
4,528,358	-		GFF4535	0.79	-2.7
4,528,367	+		GFF4535	0.80	+0.3
4,528,391	-		GFF4535	0.82	-0.4
4,528,391	-		GFF4535	0.82	-0.2
4,528,391	-		GFF4535	0.82	-1.1
4,528,402	-		GFF4535	0.83	-2.0
4,528,416	-		GFF4535	0.85	-0.8
4,528,421	-		GFF4535	0.85	+0.8
4,528,426	+		GFF4535	0.86	-0.2
4,528,443	+		GFF4535	0.87	+0.0
4,528,448	+		GFF4535	0.88	+0.1
4,528,483	-				+0.3
4,528,490	+				+0.3
4,528,496	+				-0.2
4,528,535	+				+0.0
4,528,545	+				+0.3
4,528,555	-				-0.4
4,528,558	-				-0.9
4,528,604	+				+0.8
4,528,617	+				+0.8
4,528,640	-				-0.4
4,528,666	+				-1.0
4,528,666	+				-0.9
4,528,674	-				+0.5
4,528,674	-				-0.4
4,528,733	+		GFF4536	0.15	+0.5
4,528,752	+		GFF4536	0.16	-0.1
4,528,762	+		GFF4536	0.17	-0.2
4,528,767	+		GFF4536	0.18	+0.4
4,528,767	+		GFF4536	0.18	+0.5
4,528,770	-		GFF4536	0.18	-0.7
4,528,770	-		GFF4536	0.18	-1.1
4,528,775	-		GFF4536	0.19	-0.0
4,528,778	+		GFF4536	0.19	+0.1
4,528,779	+		GFF4536	0.19	+0.6
4,528,789	+		GFF4536	0.20	+0.8
4,528,803	+		GFF4536	0.21	-0.4
4,528,838	+		GFF4536	0.25	-0.9
4,528,851	-		GFF4536	0.26	-0.7
4,528,856	-		GFF4536	0.27	-0.0
4,528,856	-		GFF4536	0.27	-0.6
4,528,858	-		GFF4536	0.27	-1.2
4,528,878	-		GFF4536	0.29	-0.0
4,528,878	-		GFF4536	0.29	-0.3
4,528,878	-		GFF4536	0.29	-1.8
4,528,886	+		GFF4536	0.30	+0.2
4,528,891	+		GFF4536	0.30	+0.4
4,528,895	+		GFF4536	0.31	-0.0
4,528,899	-		GFF4536	0.31	-1.3
4,528,904	-		GFF4536	0.31	-0.4
4,528,905	+		GFF4536	0.32	-0.7
4,528,913	-		GFF4536	0.32	+1.3
4,528,946	+		GFF4536	0.36	-1.3
4,528,952	-		GFF4536	0.36	-1.2
4,528,954	-		GFF4536	0.36	-1.0
4,528,965	+		GFF4536	0.37	-0.4
4,529,005	-		GFF4536	0.41	-1.0
4,529,007	+		GFF4536	0.42	-1.0
4,529,037	+		GFF4536	0.45	+0.4
4,529,041	+		GFF4536	0.45	+1.0
4,529,042	+		GFF4536	0.45	-1.5
4,529,042	+		GFF4536	0.45	-0.1
4,529,042	+		GFF4536	0.45	-0.3
4,529,042	+		GFF4536	0.45	-0.5
4,529,049	-		GFF4536	0.46	-0.5
4,529,050	-		GFF4536	0.46	-0.6
4,529,050	-		GFF4536	0.46	-0.2
4,529,050	-		GFF4536	0.46	-1.7
4,529,050	-		GFF4536	0.46	-0.4
4,529,050	-		GFF4536	0.46	-0.7
4,529,055	-		GFF4536	0.46	-1.3
4,529,080	+		GFF4536	0.49	+1.4
4,529,085	+		GFF4536	0.49	-1.0
4,529,086	+		GFF4536	0.49	+0.0
4,529,120	+		GFF4536	0.53	-2.3
4,529,129	+		GFF4536	0.54	-0.7
4,529,137	-		GFF4536	0.54	-0.3
4,529,137	-		GFF4536	0.54	-0.5
4,529,148	+		GFF4536	0.56	-0.5
4,529,169	-		GFF4536	0.58	-0.4
4,529,170	+		GFF4536	0.58	+0.4
4,529,178	-		GFF4536	0.58	-0.7
4,529,192	+		GFF4536	0.60	+0.2
4,529,197	+		GFF4536	0.60	-0.5
4,529,197	+		GFF4536	0.60	-0.1
4,529,197	+		GFF4536	0.60	-1.0
4,529,200	-		GFF4536	0.61	-1.0
4,529,207	+		GFF4536	0.61	-0.4
4,529,210	-		GFF4536	0.62	-0.8
4,529,210	-		GFF4536	0.62	+0.7
4,529,210	-		GFF4536	0.62	-0.3
4,529,220	-		GFF4536	0.63	+0.2
4,529,224	+		GFF4536	0.63	-0.5
4,529,258	-		GFF4536	0.66	+0.5
4,529,269	+		GFF4536	0.67	+1.3
4,529,269	+		GFF4536	0.67	-0.2
4,529,269	+		GFF4536	0.67	-0.4
4,529,269	+		GFF4536	0.67	-0.1
4,529,269	+		GFF4536	0.67	-0.5
4,529,269	+		GFF4536	0.67	-0.1
4,529,274	+		GFF4536	0.68	-0.9
4,529,274	+		GFF4536	0.68	-0.3
4,529,275	+		GFF4536	0.68	-0.3
4,529,277	-		GFF4536	0.68	-0.5
4,529,277	-		GFF4536	0.68	-0.3
4,529,277	-		GFF4536	0.68	-0.7
4,529,282	-		GFF4536	0.69	+0.2
4,529,282	-		GFF4536	0.69	+0.6
4,529,282	-		GFF4536	0.69	-0.9
4,529,296	+		GFF4536	0.70	-0.4
4,529,312	+		GFF4536	0.72	-1.5
4,529,320	+		GFF4536	0.72	-0.3
4,529,320	-		GFF4536	0.72	-2.0
4,529,320	-		GFF4536	0.72	+0.5
4,529,320	-		GFF4536	0.72	-0.5
4,529,322	+		GFF4536	0.73	-1.3
4,529,345	+		GFF4536	0.75	-2.2
4,529,350	+		GFF4536	0.75	+0.1
4,529,353	-		GFF4536	0.76	+1.2
4,529,355	+		GFF4536	0.76	-0.9
4,529,363	-		GFF4536	0.77	+0.5
4,529,367	-		GFF4536	0.77	+1.0
4,529,377	-		GFF4536	0.78	-0.3
4,529,413	+		GFF4536	0.82	-0.3
4,529,414	-		GFF4536	0.82	+0.6
4,529,433	+		GFF4536	0.84	-0.9
4,529,441	-		GFF4536	0.84	+0.7
4,529,466	+		GFF4536	0.87	-0.9
4,529,473	-		GFF4536	0.88	+0.3
4,529,474	-		GFF4536	0.88	+0.1
4,529,480	-		GFF4536	0.88	+0.0
4,529,480	-		GFF4536	0.88	-0.2
4,529,490	-		GFF4536	0.89	-0.7
4,529,508	+				+0.8
4,529,526	+				-0.3
4,529,546	-				-2.0