Strain Fitness in Sphingobium sp. HT1-2 around GFF4488

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,479,478	-		GFF4485	0.77	-0.9
4,479,482	-		GFF4485	0.78	+0.2
4,479,489	-		GFF4485	0.79	+0.8
4,479,506	+		GFF4485	0.82	+0.9
4,479,514	-		GFF4485	0.84	+0.0
4,479,514	-		GFF4485	0.84	-1.6
4,479,514	-		GFF4485	0.84	+0.5
4,479,514	-		GFF4485	0.84	-0.3
4,479,514	-		GFF4485	0.84	+0.4
4,479,529	+		GFF4485	0.86	+0.1
4,479,577	-				-0.6
4,479,581	+				+1.0
4,479,581	+				+1.0
4,479,594	+				+0.3
4,479,594	+				-2.0
4,479,594	+				-2.2
4,479,594	-				-0.1
4,479,596	-				-1.3
4,479,602	-				-0.5
4,479,602	-				-1.5
4,479,602	-				+0.5
4,479,602	-				-0.1
4,479,602	-				+0.1
4,479,613	+				+0.0
4,479,621	-				-1.9
4,479,649	+		GFF4486	0.11	+1.3
4,479,649	+		GFF4486	0.11	+0.5
4,479,649	+		GFF4486	0.11	+0.3
4,479,649	+		GFF4486	0.11	-0.3
4,479,649	+		GFF4486	0.11	+0.3
4,479,649	+		GFF4486	0.11	-0.4
4,479,649	+		GFF4486	0.11	+0.4
4,479,649	+		GFF4486	0.11	-0.3
4,479,649	+		GFF4486	0.11	-0.5
4,479,649	+		GFF4486	0.11	-0.2
4,479,654	+		GFF4486	0.12	+0.8
4,479,657	-		GFF4486	0.12	+1.0
4,479,657	-		GFF4486	0.12	-0.8
4,479,657	-		GFF4486	0.12	-0.0
4,479,657	-		GFF4486	0.12	-1.2
4,479,657	-		GFF4486	0.12	+0.3
4,479,657	-		GFF4486	0.12	+0.6
4,479,657	-		GFF4486	0.12	+1.0
4,479,657	-		GFF4486	0.12	+0.9
4,479,657	-		GFF4486	0.12	+0.7
4,479,657	-		GFF4486	0.12	+1.2
4,479,657	-		GFF4486	0.12	+0.3
4,479,657	-		GFF4486	0.12	+0.7
4,479,657	-		GFF4486	0.12	-0.1
4,479,657	-		GFF4486	0.12	+1.0
4,479,657	-		GFF4486	0.12	+0.2
4,479,657	-		GFF4486	0.12	-0.5
4,479,659	+		GFF4486	0.13	+0.3
4,479,659	+		GFF4486	0.13	+0.0
4,479,662	-		GFF4486	0.13	-0.1
4,479,667	-		GFF4486	0.15	-0.8
4,479,680	-		GFF4486	0.18	-0.2
4,479,685	+		GFF4486	0.19	-2.0
4,479,693	-		GFF4486	0.21	-2.0
4,479,695	+		GFF4486	0.21	-0.1
4,479,734	-		GFF4486	0.30	-0.1
4,479,758	+		GFF4486	0.35	-1.9
4,479,759	+		GFF4486	0.36	+0.8
4,479,764	+		GFF4486	0.37	+0.4
4,479,772	-		GFF4486	0.39	-1.9
4,479,808	-		GFF4486	0.47	-0.8
4,479,829	-		GFF4486	0.52	-1.9
4,479,829	-		GFF4486	0.52	-0.8
4,479,850	+		GFF4486	0.56	-1.5
4,479,850	+		GFF4486	0.56	+0.2
4,479,850	+		GFF4486	0.56	+1.1
4,479,858	-		GFF4486	0.58	+0.0
4,479,877	-		GFF4486	0.63	-0.9
4,479,882	-		GFF4486	0.64	+0.5
4,479,912	+		GFF4486	0.71	+0.6
4,479,912	+		GFF4486	0.71	-1.9
4,479,912	+		GFF4486	0.71	-1.5
4,479,912	+		GFF4486	0.71	-1.6
4,479,920	-		GFF4486	0.72	+1.2
4,479,920	-		GFF4486	0.72	+1.2
4,479,920	-		GFF4486	0.72	+1.1
4,479,920	-		GFF4486	0.72	+0.8
4,479,920	-		GFF4486	0.72	+1.2
4,479,920	-		GFF4486	0.72	+0.8
4,479,920	-		GFF4486	0.72	+0.3
4,479,943	+		GFF4486	0.78	+0.5
4,479,943	+		GFF4486	0.78	+0.8
4,479,943	+		GFF4486	0.78	-0.6
4,479,943	+		GFF4486	0.78	-0.8
4,479,943	+		GFF4486	0.78	+0.6
4,479,943	+		GFF4486	0.78	-0.8
4,479,943	+		GFF4486	0.78	+1.0
4,479,943	+		GFF4486	0.78	-0.1
4,479,943	+		GFF4486	0.78	+1.1
4,479,943	+		GFF4486	0.78	+1.0
4,479,943	+		GFF4486	0.78	-2.1
4,479,943	+		GFF4486	0.78	+1.5
4,479,951	-		GFF4486	0.79	+0.2
4,479,951	-		GFF4486	0.79	-0.3
4,479,951	-		GFF4486	0.79	+1.7
4,479,951	-		GFF4486	0.79	+0.6
4,479,951	-		GFF4486	0.79	-0.2
4,479,951	-		GFF4486	0.79	+1.1
4,479,951	-		GFF4486	0.79	+0.1
4,479,980	-		GFF4486	0.86	+0.9
4,480,003	-				+0.1
4,480,010	-				-0.9
4,480,018	+				-1.3
4,480,047	+				+1.5
4,480,104	+		GFF4487	0.24	+0.8
4,480,112	-		GFF4487	0.27	-0.6
4,480,123	+		GFF4487	0.30	+0.5
4,480,123	+		GFF4487	0.30	-0.8
4,480,123	+		GFF4487	0.30	+0.1
4,480,123	+		GFF4487	0.30	+1.1
4,480,130	+		GFF4487	0.33	-0.5
4,480,131	-		GFF4487	0.33	+0.5
4,480,131	-		GFF4487	0.33	-0.2
4,480,143	+		GFF4487	0.38	+0.5
4,480,145	+		GFF4487	0.38	-0.4
4,480,148	+		GFF4487	0.39	+0.9
4,480,156	-		GFF4487	0.42	+1.8
4,480,156	-		GFF4487	0.42	+1.1
4,480,175	-		GFF4487	0.49	-1.8
4,480,200	+		GFF4487	0.58	-0.6
4,480,208	-		GFF4487	0.61	-1.9
4,480,227	+		GFF4487	0.67	+1.7
4,480,227	+		GFF4487	0.67	+1.1
4,480,227	+		GFF4487	0.67	+1.0
4,480,237	-		GFF4487	0.71	+1.0
4,480,243	+		GFF4487	0.73	-2.3
4,480,243	+		GFF4487	0.73	+0.4
4,480,247	-		GFF4487	0.74	+0.5
4,480,252	-		GFF4487	0.76	-0.6
4,480,252	-		GFF4487	0.76	-1.1
4,480,258	+		GFF4487	0.78	+0.9
4,480,261	-		GFF4487	0.79	+0.8
4,480,301	+				+0.7
4,480,309	-				+0.0
4,480,309	-				+0.1
4,480,309	-				-0.4
4,480,314	-				+0.0
4,480,314	-				+0.5
4,480,314	-				+0.4
4,480,325	+				-0.5
4,480,325	+				-0.4
4,480,333	-				-1.1
4,480,362	-				+0.1
4,480,365	+				+0.0
4,480,382	+				-2.8
4,480,382	+				-2.1
4,480,382	+				+1.0
4,480,382	+				-0.4
4,480,382	+				+1.4
4,480,382	+				-0.2
4,480,382	+				+0.5
4,480,382	+				+0.3
4,480,390	-				+0.0
4,480,390	-				-1.0
4,480,390	-				+0.1
4,480,395	+				-0.5
4,480,402	+				-0.8
4,480,403	-				+0.4
4,480,410	-				-0.1
4,480,410	-				+1.1
4,480,414	-				+1.4
4,480,416	+				+0.0
4,480,416	+				-1.3
4,480,424	-				+1.1
4,480,424	-				+1.4
4,480,424	-				+0.5
4,480,429	-				-0.5
4,480,429	-				+0.3
4,480,429	-				-0.9
4,480,429	-				+0.3
4,480,472	-				+0.8
4,480,487	-				-0.4
4,480,505	+				+1.6
4,480,507	-				-0.7
4,480,520	+		GFF4488	0.11	+1.4
4,480,520	+		GFF4488	0.11	-0.6
4,480,528	-		GFF4488	0.12	-0.3
4,480,528	-		GFF4488	0.12	-0.8
4,480,528	-		GFF4488	0.12	+0.6
4,480,528	-		GFF4488	0.12	+0.5
4,480,528	-		GFF4488	0.12	+0.2
4,480,528	-		GFF4488	0.12	+0.0
4,480,548	-		GFF4488	0.16	-2.2
4,480,561	-		GFF4488	0.18	-0.4
4,480,572	-		GFF4488	0.20	+0.3
4,480,584	+		GFF4488	0.22	+0.9
4,480,584	+		GFF4488	0.22	+0.1
4,480,584	+		GFF4488	0.22	-1.3
4,480,587	-		GFF4488	0.22	+0.2
4,480,592	-		GFF4488	0.23	+1.4
4,480,602	+		GFF4488	0.25	-0.1
4,480,610	-		GFF4488	0.26	-0.6
4,480,616	-		GFF4488	0.27	+0.6
4,480,634	+		GFF4488	0.30	-2.4
4,480,636	+		GFF4488	0.30	-2.0
4,480,636	+		GFF4488	0.30	-0.9
4,480,636	+		GFF4488	0.30	+0.8
4,480,641	+		GFF4488	0.31	-0.7
4,480,642	+		GFF4488	0.31	-0.1
4,480,642	-		GFF4488	0.31	-0.3
4,480,644	-		GFF4488	0.32	+0.9
4,480,644	-		GFF4488	0.32	-0.5
4,480,644	-		GFF4488	0.32	-1.6
4,480,644	-		GFF4488	0.32	-0.2
4,480,699	+		GFF4488	0.41	+0.7
4,480,699	+		GFF4488	0.41	-1.3
4,480,712	+		GFF4488	0.43	-0.1
4,480,714	+		GFF4488	0.44	+1.7
4,480,720	-		GFF4488	0.45	+0.8
4,480,728	-		GFF4488	0.46	+0.5
4,480,750	-		GFF4488	0.50	+0.7
4,480,755	-		GFF4488	0.50	+0.5
4,480,775	+		GFF4488	0.54	-0.4
4,480,777	+		GFF4488	0.54	+0.7
4,480,777	+		GFF4488	0.54	+1.5
4,480,778	-		GFF4488	0.54	+0.8
4,480,780	-		GFF4488	0.55	+0.0
4,480,782	+		GFF4488	0.55	-1.6
4,480,782	+		GFF4488	0.55	+1.2
4,480,782	+		GFF4488	0.55	+1.0
4,480,782	+		GFF4488	0.55	-2.1
4,480,782	+		GFF4488	0.55	-0.2
4,480,782	+		GFF4488	0.55	+1.2
4,480,784	+		GFF4488	0.55	+1.4
4,480,785	-		GFF4488	0.55	+0.3
4,480,790	-		GFF4488	0.56	-0.2
4,480,790	-		GFF4488	0.56	-0.2
4,480,797	+		GFF4488	0.57	+0.9
4,480,797	-		GFF4488	0.57	+0.7
4,480,797	-		GFF4488	0.57	-0.5
4,480,802	-		GFF4488	0.58	+1.2
4,480,818	+		GFF4488	0.61	+0.4
4,480,818	+		GFF4488	0.61	+1.1
4,480,819	+		GFF4488	0.61	-0.6
4,480,826	-		GFF4488	0.62	+0.3
4,480,837	-		GFF4488	0.64	-1.2
4,480,851	-		GFF4488	0.66	+1.7
4,480,902	+		GFF4488	0.75	+1.4
4,480,910	-		GFF4488	0.76	+0.9
4,480,910	-		GFF4488	0.76	+0.2
4,480,938	-		GFF4488	0.81	+0.0
4,480,976	+		GFF4488	0.87	+0.1
4,480,979	-		GFF4488	0.88	+0.0
4,480,979	-		GFF4488	0.88	+0.1
4,480,979	-		GFF4488	0.88	+0.5
4,480,984	-		GFF4488	0.89	-0.6
4,480,984	-		GFF4488	0.89	+1.9
4,480,994	+				-0.9
4,481,007	+				+0.3
4,481,007	+				+0.9
4,481,007	+				+0.0
4,481,035	+				+1.0
4,481,047	+				+0.2
4,481,075	+				+0.9
4,481,075	+				-0.8
4,481,075	+				+1.9
4,481,083	-				+0.4
4,481,083	-				+0.9
4,481,083	-				+0.8
4,481,092	+				+1.8
4,481,092	+				-0.6
4,481,100	-				-0.2
4,481,119	-				-0.5
4,481,133	+				-1.8
4,481,177	+				+0.5
4,481,206	+				-0.6
4,481,209	-				-0.9
4,481,212	+				-0.5
4,481,214	-				+0.5
4,481,220	-				-2.2
4,481,227	-				+0.9
4,481,243	+				+0.0
4,481,316	+		GFF4489	0.11	-1.2
4,481,316	+		GFF4489	0.11	-0.4
4,481,319	-		GFF4489	0.12	+1.4
4,481,334	+		GFF4489	0.16	-0.7
4,481,334	+		GFF4489	0.16	-1.7
4,481,339	+		GFF4489	0.17	+0.2
4,481,342	-		GFF4489	0.18	+0.4
4,481,344	+		GFF4489	0.18	-0.1
4,481,345	+		GFF4489	0.19	+0.2
4,481,345	+		GFF4489	0.19	-0.2
4,481,345	+		GFF4489	0.19	+0.1
4,481,345	+		GFF4489	0.19	+2.4
4,481,347	-		GFF4489	0.19	-0.6
4,481,347	-		GFF4489	0.19	-0.9
4,481,347	-		GFF4489	0.19	+0.4
4,481,347	-		GFF4489	0.19	-0.0
4,481,347	-		GFF4489	0.19	+0.7
4,481,352	-		GFF4489	0.20	+0.8
4,481,352	-		GFF4489	0.20	+0.5
4,481,352	-		GFF4489	0.20	-0.6
4,481,352	-		GFF4489	0.20	+0.1
4,481,353	-		GFF4489	0.21	-0.0
4,481,353	-		GFF4489	0.21	+0.9
4,481,357	-		GFF4489	0.22	+0.3
4,481,359	-		GFF4489	0.22	+1.4
4,481,367	-		GFF4489	0.24	-0.5
4,481,387	-		GFF4489	0.30	+0.2
4,481,399	-		GFF4489	0.33	-2.7
4,481,406	-		GFF4489	0.35	-0.1
4,481,446	+		GFF4489	0.45	+0.2
4,481,454	-		GFF4489	0.47	-0.1
4,481,464	-		GFF4489	0.50	+0.1
4,481,475	+		GFF4489	0.53	-1.9
4,481,553	-		GFF4489	0.73	-0.1
4,481,579	+		GFF4489	0.80	-0.1
4,481,612	+		GFF4489	0.89	+0.0
4,481,635	-				-0.5
4,481,646	-				-1.7
4,481,653	-				+0.0
4,481,657	-				-1.0
4,481,657	-				+1.7
4,481,659	+				-2.0
4,481,675	-				+0.0
4,481,687	+				-1.1
4,481,687	+				+0.1
4,481,695	-				+0.8
4,481,695	-				+1.5
4,481,751	+				+0.1
4,481,751	+				+1.0
4,481,751	+				+0.0
4,481,751	+				+1.3
4,481,751	+				-0.2
4,481,751	+				+0.6
4,481,751	+				+0.4
4,481,751	+				+1.5
4,481,751	+				+0.3
4,481,756	+		GFF4490	0.10	+0.0
4,481,759	-		GFF4490	0.11	+0.7
4,481,759	-		GFF4490	0.11	-0.3
4,481,759	-		GFF4490	0.11	-0.6
4,481,759	-		GFF4490	0.11	-1.6
4,481,759	-		GFF4490	0.11	-0.2
4,481,759	-		GFF4490	0.11	-0.1
4,481,759	-		GFF4490	0.11	+0.2
4,481,763	+		GFF4490	0.11	+1.7
4,481,764	-		GFF4490	0.11	-1.2
4,481,764	-		GFF4490	0.11	+0.5
4,481,764	-		GFF4490	0.11	+0.6
4,481,782	-		GFF4490	0.13	+0.0
4,481,815	-		GFF4490	0.17	+0.6
4,481,817	+		GFF4490	0.17	+0.1
4,481,817	+		GFF4490	0.17	-1.1
4,481,822	+		GFF4490	0.17	+1.1
4,481,825	-		GFF4490	0.18	+0.2
4,481,825	-		GFF4490	0.18	-0.9
4,481,825	-		GFF4490	0.18	+0.8
4,481,831	+		GFF4490	0.18	+1.9
4,481,841	+		GFF4490	0.19	-1.0
4,481,844	-		GFF4490	0.20	+0.9
4,481,849	-		GFF4490	0.20	+0.5
4,481,859	-		GFF4490	0.21	+1.3
4,481,860	+		GFF4490	0.21	+1.0
4,481,879	-		GFF4490	0.24	+1.5
4,481,939	-		GFF4490	0.30	+1.6
4,481,940	+		GFF4490	0.30	-2.2
4,481,945	+		GFF4490	0.31	-0.5
4,481,949	-		GFF4490	0.31	+0.9
4,481,949	-		GFF4490	0.31	+1.2
4,481,953	-		GFF4490	0.31	+0.4
4,481,957	-		GFF4490	0.32	-2.3
4,481,963	-		GFF4490	0.32	-2.0
4,481,972	-		GFF4490	0.33	-0.4
4,481,972	-		GFF4490	0.33	-0.4
4,482,011	+		GFF4490	0.38	-1.2