Strain Fitness in Sphingobium sp. HT1-2 around GFF4484

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,476,046	+		GFF4483	0.21	-0.8
4,476,046	+		GFF4483	0.21	-0.1
4,476,046	+		GFF4483	0.21	+0.5
4,476,046	+		GFF4483	0.21	+0.4
4,476,054	-		GFF4483	0.21	+0.3
4,476,054	-		GFF4483	0.21	+1.0
4,476,054	-		GFF4483	0.21	+1.0
4,476,057	+		GFF4483	0.22	-1.5
4,476,065	-		GFF4483	0.22	+0.5
4,476,095	+		GFF4483	0.25	-1.6
4,476,103	-		GFF4483	0.25	+0.2
4,476,136	+		GFF4483	0.28	+0.0
4,476,141	+		GFF4483	0.28	+0.5
4,476,142	-		GFF4483	0.28	+1.9
4,476,144	-		GFF4483	0.29	+0.0
4,476,144	-		GFF4483	0.29	+0.9
4,476,149	-		GFF4483	0.29	+0.5
4,476,167	-		GFF4483	0.30	+1.3
4,476,167	-		GFF4483	0.30	-0.3
4,476,206	-		GFF4483	0.33	+0.2
4,476,206	-		GFF4483	0.33	-1.5
4,476,217	+		GFF4483	0.34	-2.1
4,476,223	+		GFF4483	0.35	+1.1
4,476,223	+		GFF4483	0.35	-0.8
4,476,223	+		GFF4483	0.35	+0.8
4,476,228	+		GFF4483	0.35	+0.4
4,476,230	+		GFF4483	0.35	+0.3
4,476,230	+		GFF4483	0.35	-1.5
4,476,230	+		GFF4483	0.35	+0.5
4,476,230	+		GFF4483	0.35	-0.4
4,476,231	-		GFF4483	0.35	+0.2
4,476,236	-		GFF4483	0.36	+0.7
4,476,238	-		GFF4483	0.36	+0.9
4,476,238	-		GFF4483	0.36	+0.1
4,476,238	-		GFF4483	0.36	+1.7
4,476,238	-		GFF4483	0.36	-0.6
4,476,238	-		GFF4483	0.36	+1.0
4,476,257	+		GFF4483	0.37	+0.0
4,476,267	-		GFF4483	0.38	+0.0
4,476,291	+		GFF4483	0.40	-0.9
4,476,291	+		GFF4483	0.40	-1.9
4,476,299	-		GFF4483	0.41	-1.1
4,476,299	-		GFF4483	0.41	+0.1
4,476,299	-		GFF4483	0.41	-1.1
4,476,303	+		GFF4483	0.41	+0.1
4,476,303	+		GFF4483	0.41	-1.4
4,476,303	+		GFF4483	0.41	-0.9
4,476,303	+		GFF4483	0.41	+0.9
4,476,303	+		GFF4483	0.41	-1.5
4,476,303	+		GFF4483	0.41	-1.1
4,476,305	-		GFF4483	0.41	-1.2
4,476,306	-		GFF4483	0.41	+0.5
4,476,311	-		GFF4483	0.42	+2.0
4,476,311	-		GFF4483	0.42	+0.1
4,476,311	-		GFF4483	0.42	-0.1
4,476,311	-		GFF4483	0.42	+1.8
4,476,311	-		GFF4483	0.42	+1.0
4,476,328	-		GFF4483	0.43	-0.2
4,476,364	-		GFF4483	0.46	-0.5
4,476,375	+		GFF4483	0.47	+0.6
4,476,443	-		GFF4483	0.52	-1.0
4,476,459	+		GFF4483	0.53	+0.9
4,476,492	+		GFF4483	0.56	+0.5
4,476,505	-		GFF4483	0.57	+1.0
4,476,517	+		GFF4483	0.58	+1.6
4,476,517	-		GFF4483	0.58	-0.5
4,476,535	+		GFF4483	0.59	-0.6
4,476,535	+		GFF4483	0.59	-0.5
4,476,543	-		GFF4483	0.60	-0.7
4,476,545	+		GFF4483	0.60	+0.2
4,476,550	+		GFF4483	0.61	-0.2
4,476,563	-		GFF4483	0.62	-0.1
4,476,572	+		GFF4483	0.62	+0.1
4,476,578	+		GFF4483	0.63	-0.5
4,476,586	-		GFF4483	0.63	+0.9
4,476,611	+		GFF4483	0.65	+0.0
4,476,642	+		GFF4483	0.68	+0.3
4,476,646	+		GFF4483	0.68	+0.9
4,476,695	-		GFF4483	0.72	+0.6
4,476,701	-		GFF4483	0.73	+0.3
4,476,706	-		GFF4483	0.73	+0.3
4,476,706	-		GFF4483	0.73	+1.2
4,476,709	-		GFF4483	0.73	+0.4
4,476,710	-		GFF4483	0.73	+0.5
4,476,716	-		GFF4483	0.74	-0.3
4,476,720	-		GFF4483	0.74	-0.6
4,476,722	+		GFF4483	0.74	-0.9
4,476,752	-		GFF4483	0.77	-0.4
4,476,752	-		GFF4483	0.77	-0.8
4,476,780	-		GFF4483	0.79	+0.9
4,476,784	+		GFF4483	0.79	-0.7
4,476,792	-		GFF4483	0.80	-0.7
4,476,805	-		GFF4483	0.81	-0.5
4,476,856	-		GFF4483	0.85	+0.0
4,476,861	+		GFF4483	0.85	+0.1
4,476,861	+		GFF4483	0.85	-0.2
4,476,861	+		GFF4483	0.85	-1.1
4,476,867	+		GFF4483	0.86	-0.1
4,476,869	-		GFF4483	0.86	+0.9
4,476,873	+		GFF4483	0.86	-0.1
4,476,876	-		GFF4483	0.86	-1.7
4,476,878	+		GFF4483	0.86	-0.6
4,476,891	+		GFF4483	0.88	-0.9
4,476,896	+		GFF4483	0.88	-0.6
4,476,909	+		GFF4483	0.89	-0.3
4,476,956	+				+1.2
4,476,992	+				-0.1
4,477,000	-				+0.6
4,477,000	-				+0.1
4,477,000	-				+0.5
4,477,000	-				-0.7
4,477,000	-				+1.7
4,477,015	+				-0.1
4,477,015	+				+1.1
4,477,018	-				+0.1
4,477,065	-				+1.8
4,477,066	-				+0.4
4,477,066	-				-0.2
4,477,069	+				+0.9
4,477,069	+				+0.3
4,477,069	+				-0.6
4,477,077	-				+0.6
4,477,077	-				+0.4
4,477,113	-				+0.0
4,477,118	-				+0.0
4,477,118	-				-2.2
4,477,118	-				+0.7
4,477,128	-				+0.8
4,477,130	-				-1.4
4,477,132	+				-1.1
4,477,151	-				+1.1
4,477,163	-				-0.5
4,477,163	-				+1.3
4,477,163	-				-0.5
4,477,163	-				+0.2
4,477,226	+				-0.1
4,477,279	-		GFF4484	0.12	+0.8
4,477,280	+		GFF4484	0.12	+0.1
4,477,288	-		GFF4484	0.13	+0.4
4,477,302	+		GFF4484	0.14	-1.6
4,477,303	-		GFF4484	0.14	-0.2
4,477,304	-		GFF4484	0.14	+0.5
4,477,347	+		GFF4484	0.16	+0.6
4,477,347	+		GFF4484	0.16	+0.5
4,477,347	+		GFF4484	0.16	+0.6
4,477,355	-		GFF4484	0.16	+1.0
4,477,365	+		GFF4484	0.17	+0.2
4,477,373	-		GFF4484	0.17	+0.2
4,477,399	+		GFF4484	0.19	+0.5
4,477,428	+		GFF4484	0.20	+0.7
4,477,433	+		GFF4484	0.20	-0.2
4,477,433	+		GFF4484	0.20	-2.0
4,477,433	+		GFF4484	0.20	-0.8
4,477,436	-		GFF4484	0.21	-0.3
4,477,460	+		GFF4484	0.22	+0.4
4,477,463	-		GFF4484	0.22	+0.1
4,477,479	+		GFF4484	0.23	-0.2
4,477,508	-		GFF4484	0.24	+1.0
4,477,508	-		GFF4484	0.24	-0.5
4,477,509	-		GFF4484	0.24	-0.1
4,477,514	+		GFF4484	0.25	+1.3
4,477,531	+		GFF4484	0.26	-0.5
4,477,540	+		GFF4484	0.26	+0.2
4,477,558	+		GFF4484	0.27	-0.5
4,477,559	+		GFF4484	0.27	+1.2
4,477,559	+		GFF4484	0.27	-2.7
4,477,559	+		GFF4484	0.27	+0.3
4,477,559	+		GFF4484	0.27	+0.3
4,477,567	-		GFF4484	0.28	+1.5
4,477,567	-		GFF4484	0.28	+0.5
4,477,567	-		GFF4484	0.28	+0.9
4,477,567	-		GFF4484	0.28	+1.0
4,477,567	-		GFF4484	0.28	+0.1
4,477,567	-		GFF4484	0.28	+1.1
4,477,598	+		GFF4484	0.29	-0.5
4,477,612	+		GFF4484	0.30	+0.4
4,477,646	-		GFF4484	0.32	-0.2
4,477,708	-		GFF4484	0.35	-1.4
4,477,720	+		GFF4484	0.36	+0.1
4,477,734	+		GFF4484	0.36	+0.4
4,477,771	+		GFF4484	0.38	+0.0
4,477,785	-		GFF4484	0.39	+0.9
4,477,787	-		GFF4484	0.39	-1.0
4,477,792	+		GFF4484	0.39	+0.5
4,477,795	-		GFF4484	0.40	+0.3
4,477,796	+		GFF4484	0.40	-2.6
4,477,800	-		GFF4484	0.40	+0.6
4,477,804	-		GFF4484	0.40	-0.7
4,477,810	+		GFF4484	0.40	+0.4
4,477,833	-		GFF4484	0.42	+0.7
4,477,845	-		GFF4484	0.42	+1.3
4,477,850	+		GFF4484	0.42	+0.2
4,477,908	+		GFF4484	0.46	+0.1
4,477,908	+		GFF4484	0.46	-0.3
4,477,915	-		GFF4484	0.46	-0.3
4,477,915	-		GFF4484	0.46	-0.6
4,477,916	-		GFF4484	0.46	+1.2
4,477,918	+		GFF4484	0.46	+0.3
4,477,926	-		GFF4484	0.46	-0.5
4,477,933	-		GFF4484	0.47	+0.3
4,477,977	+		GFF4484	0.49	+0.7
4,477,977	+		GFF4484	0.49	-0.1
4,477,985	-		GFF4484	0.50	+0.3
4,477,997	-		GFF4484	0.50	+0.5
4,477,997	-		GFF4484	0.50	-0.5
4,477,997	-		GFF4484	0.50	-1.0
4,477,997	-		GFF4484	0.50	+0.5
4,478,012	+		GFF4484	0.51	+1.5
4,478,027	+		GFF4484	0.52	-0.5
4,478,035	-		GFF4484	0.52	+0.1
4,478,037	+		GFF4484	0.52	+0.9
4,478,057	+		GFF4484	0.53	+0.0
4,478,064	-		GFF4484	0.54	-1.5
4,478,073	+		GFF4484	0.54	+0.0
4,478,081	-		GFF4484	0.55	-1.7
4,478,124	-		GFF4484	0.57	+0.6
4,478,128	+		GFF4484	0.57	+0.4
4,478,133	+		GFF4484	0.57	+1.2
4,478,153	-		GFF4484	0.58	+0.2
4,478,153	-		GFF4484	0.58	+1.7
4,478,158	-		GFF4484	0.59	-0.7
4,478,160	+		GFF4484	0.59	+0.3
4,478,163	+		GFF4484	0.59	-1.1
4,478,165	+		GFF4484	0.59	+1.0
4,478,165	+		GFF4484	0.59	+0.4
4,478,173	-		GFF4484	0.59	+0.9
4,478,173	-		GFF4484	0.59	+0.2
4,478,175	+		GFF4484	0.60	+0.8
4,478,181	-		GFF4484	0.60	+0.7
4,478,183	-		GFF4484	0.60	+1.1
4,478,203	+		GFF4484	0.61	-0.6
4,478,203	+		GFF4484	0.61	+1.4
4,478,203	+		GFF4484	0.61	-1.5
4,478,203	+		GFF4484	0.61	-0.7
4,478,209	+		GFF4484	0.61	+0.6
4,478,211	-		GFF4484	0.61	+1.1
4,478,211	-		GFF4484	0.61	+0.4
4,478,211	-		GFF4484	0.61	+0.6
4,478,211	-		GFF4484	0.61	-1.2
4,478,211	-		GFF4484	0.61	+0.4
4,478,211	-		GFF4484	0.61	+0.2
4,478,211	-		GFF4484	0.61	+0.8
4,478,211	-		GFF4484	0.61	-1.8
4,478,212	-		GFF4484	0.62	+0.0
4,478,217	-		GFF4484	0.62	+0.8
4,478,217	-		GFF4484	0.62	+0.7
4,478,223	+		GFF4484	0.62	+0.4
4,478,249	-		GFF4484	0.64	+0.7
4,478,265	-		GFF4484	0.64	-1.2
4,478,275	-		GFF4484	0.65	-0.7
4,478,275	-		GFF4484	0.65	-0.3
4,478,281	+		GFF4484	0.65	+0.9
4,478,289	-		GFF4484	0.66	+0.7
4,478,290	-		GFF4484	0.66	-0.3
4,478,291	+		GFF4484	0.66	-1.5
4,478,321	-		GFF4484	0.67	-0.6
4,478,337	+		GFF4484	0.68	-0.5
4,478,350	-		GFF4484	0.69	-0.5
4,478,350	-		GFF4484	0.69	+1.4
4,478,416	+		GFF4484	0.72	+0.4
4,478,424	-		GFF4484	0.73	-0.4
4,478,424	-		GFF4484	0.73	-0.3
4,478,436	+		GFF4484	0.73	-0.9
4,478,439	-		GFF4484	0.74	+0.4
4,478,468	-		GFF4484	0.75	-0.8
4,478,470	+		GFF4484	0.75	-0.8
4,478,470	+		GFF4484	0.75	+0.4
4,478,478	-		GFF4484	0.76	+0.3
4,478,480	+		GFF4484	0.76	+0.4
4,478,484	-		GFF4484	0.76	-1.2
4,478,493	+		GFF4484	0.76	+0.8
4,478,519	+		GFF4484	0.78	+0.0
4,478,519	+		GFF4484	0.78	+0.3
4,478,527	-		GFF4484	0.78	-1.8
4,478,527	-		GFF4484	0.78	-0.1
4,478,527	-		GFF4484	0.78	-2.5
4,478,534	+		GFF4484	0.79	+1.0
4,478,542	+		GFF4484	0.79	+0.5
4,478,611	-		GFF4484	0.83	+0.9
4,478,642	-		GFF4484	0.84	+1.2
4,478,681	+		GFF4484	0.86	-0.4
4,478,701	+		GFF4484	0.87	-0.3
4,478,701	+		GFF4484	0.87	-1.6
4,478,704	-		GFF4484	0.88	+0.9
4,478,707	-		GFF4484	0.88	+0.1
4,478,720	+		GFF4484	0.88	-0.5
4,478,722	-		GFF4484	0.88	+0.5
4,478,728	-		GFF4484	0.89	+0.0
4,478,760	-				+0.4
4,478,843	+				+0.7
4,478,872	-				+0.6
4,478,890	+				+0.8
4,478,895	+				+1.7
4,478,895	+				+0.9
4,478,898	-				+0.9
4,478,898	-				-0.3
4,478,900	+				+0.5
4,478,903	-				+1.1
4,478,903	-				+1.4
4,478,903	-				+0.5
4,478,927	+				-2.4
4,478,967	+				-1.7
4,478,967	+				-0.5
4,478,967	-				+0.2
4,478,967	-				-2.0
4,478,972	-				+0.9
4,478,994	+				+0.1
4,479,001	+				+0.3
4,479,008	-				+0.3
4,479,008	-				-0.2
4,479,008	-				+0.1
4,479,009	-				+1.2
4,479,009	-				-0.7
4,479,030	+				+0.4
4,479,032	+				+0.3
4,479,032	+				+0.9
4,479,032	+				-2.6
4,479,038	-				-1.5
4,479,040	-				+1.0
4,479,040	-				-0.1
4,479,053	+				-1.7
4,479,076	+				-1.5
4,479,085	+				+0.5
4,479,095	+		GFF4485	0.11	+0.2
4,479,096	-		GFF4485	0.11	-0.9
4,479,096	-		GFF4485	0.11	-0.9
4,479,114	-		GFF4485	0.14	+0.0
4,479,129	+		GFF4485	0.17	+0.1
4,479,129	+		GFF4485	0.17	+0.6
4,479,131	+		GFF4485	0.17	+1.0
4,479,136	+		GFF4485	0.18	+1.1
4,479,137	-		GFF4485	0.18	+0.9
4,479,152	+		GFF4485	0.21	+1.0
4,479,152	+		GFF4485	0.21	+0.6
4,479,152	+		GFF4485	0.21	+1.5
4,479,152	+		GFF4485	0.21	+1.3
4,479,152	+		GFF4485	0.21	-0.7
4,479,152	+		GFF4485	0.21	+0.2
4,479,152	+		GFF4485	0.21	+1.3
4,479,160	+		GFF4485	0.22	+0.5
4,479,160	-		GFF4485	0.22	+0.9
4,479,160	-		GFF4485	0.22	+0.6
4,479,160	-		GFF4485	0.22	-0.4
4,479,160	-		GFF4485	0.22	-1.7
4,479,165	+		GFF4485	0.23	+0.1
4,479,168	-		GFF4485	0.23	+0.8
4,479,175	-		GFF4485	0.25	+1.1
4,479,179	+		GFF4485	0.25	+1.2
4,479,222	-		GFF4485	0.33	+0.9
4,479,236	+		GFF4485	0.35	+0.7
4,479,236	+		GFF4485	0.35	+0.9
4,479,236	+		GFF4485	0.35	-0.6
4,479,244	-		GFF4485	0.37	+0.2
4,479,247	+		GFF4485	0.37	+1.2
4,479,270	-		GFF4485	0.41	+1.1
4,479,308	-		GFF4485	0.48	+0.5
4,479,318	+		GFF4485	0.50	+0.3
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