Strain Fitness in Sphingobium sp. HT1-2 around GFF4463

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,457,216	+				-1.8
4,457,216	+				+0.3
4,457,233	+				-0.8
4,457,267	+				+0.5
4,457,267	+				+0.5
4,457,273	-				+1.0
4,457,275	-				+1.0
4,457,275	-				-0.6
4,457,278	-				+0.6
4,457,278	-				+0.2
4,457,286	+				-1.9
4,457,336	+				+1.0
4,457,338	+				-0.3
4,457,339	-				+0.0
4,457,345	-				+0.9
4,457,355	-				+0.3
4,457,418	-				-0.2
4,457,443	+				+1.1
4,457,451	-				+0.1
4,457,482	+				+0.5
4,457,487	+				+0.1
4,457,512	-				+0.1
4,457,538	+				+0.4
4,457,538	+				+0.2
4,457,546	-				-0.7
4,457,559	+				-1.0
4,457,561	+				-0.7
4,457,561	+				+0.1
4,457,569	-				-0.9
4,457,569	-				+0.9
4,457,570	+				-0.1
4,457,580	+				-0.1
4,457,598	+				-0.1
4,457,612	-				-1.0
4,457,633	+				-0.2
4,457,633	+				+0.1
4,457,641	-				+0.2
4,457,641	-				+1.3
4,457,650	+				+0.7
4,457,673	-				+1.0
4,457,677	-				-0.7
4,457,689	-				-0.4
4,457,710	+				-0.6
4,457,713	-				+1.2
4,457,713	-				+0.2
4,457,713	-				+0.1
4,457,715	+				+1.4
4,457,731	+				+0.9
4,457,739	-				-1.0
4,457,739	-				+0.7
4,457,759	+				+0.1
4,457,764	+				+0.9
4,457,764	+				-1.3
4,457,798	+				+1.6
4,457,805	+				-1.7
4,457,811	-				+0.8
4,457,843	+				+1.1
4,457,843	+				-1.6
4,457,848	+				-0.2
4,457,848	+				-2.3
4,457,848	+				+0.8
4,457,848	+				+0.4
4,457,848	+				+1.1
4,457,848	+				+0.3
4,457,848	+				-1.1
4,457,848	+				+0.4
4,457,848	+				-0.9
4,457,848	+				-0.1
4,457,851	-				-0.4
4,457,851	-				+0.8
4,457,856	-				+0.7
4,457,856	-				+1.2
4,457,856	-				-0.8
4,457,856	-				+0.1
4,457,856	-				-0.2
4,457,856	-				-0.9
4,457,898	-				+0.5
4,457,900	+				+1.9
4,457,900	+				+0.2
4,457,900	+				+0.4
4,457,900	+				-0.0
4,457,908	-				-0.8
4,457,908	-				-0.1
4,457,908	-				-0.2
4,457,908	-				-0.5
4,457,908	-				-0.7
4,457,970	-				-0.0
4,457,980	-				+1.7
4,457,980	-				+0.5
4,457,998	+				+0.7
4,458,017	+				+0.7
4,458,027	+				+1.2
4,458,031	+				+0.7
4,458,031	+				+0.1
4,458,073	+		GFF4462	0.27	+2.1
4,458,094	+		GFF4462	0.39	-1.9
4,458,094	-		GFF4462	0.39	+0.5
4,458,099	-		GFF4462	0.42	-0.1
4,458,102	-		GFF4462	0.44	+1.3
4,458,104	+		GFF4462	0.45	+0.7
4,458,104	+		GFF4462	0.45	+0.1
4,458,114	-		GFF4462	0.52	+0.3
4,458,180	-				-0.7
4,458,338	+		GFF4463	0.20	+1.9
4,458,351	+		GFF4463	0.22	-0.2
4,458,354	-		GFF4463	0.22	-1.1
4,458,370	-		GFF4463	0.24	-0.5
4,458,380	+		GFF4463	0.25	-0.9
4,458,413	-		GFF4463	0.30	-0.5
4,458,419	-		GFF4463	0.31	+0.2
4,458,419	-		GFF4463	0.31	+1.4
4,458,445	+		GFF4463	0.34	-2.3
4,458,449	+		GFF4463	0.35	+0.4
4,458,449	+		GFF4463	0.35	-1.7
4,458,452	-		GFF4463	0.35	+1.8
4,458,462	-		GFF4463	0.36	+0.5
4,458,467	-		GFF4463	0.37	+0.4
4,458,488	+		GFF4463	0.40	-0.8
4,458,493	+		GFF4463	0.41	+0.9
4,458,493	+		GFF4463	0.41	-0.9
4,458,496	-		GFF4463	0.41	+0.9
4,458,498	+		GFF4463	0.41	+1.3
4,458,498	+		GFF4463	0.41	+0.6
4,458,501	-		GFF4463	0.42	-0.8
4,458,501	-		GFF4463	0.42	+0.4
4,458,501	-		GFF4463	0.42	+0.0
4,458,501	-		GFF4463	0.42	-0.0
4,458,506	-		GFF4463	0.42	-0.5
4,458,506	-		GFF4463	0.42	+0.4
4,458,506	-		GFF4463	0.42	+0.3
4,458,516	-		GFF4463	0.44	+0.6
4,458,532	-		GFF4463	0.46	+0.6
4,458,532	-		GFF4463	0.46	+1.0
4,458,537	+		GFF4463	0.46	-0.0
4,458,537	+		GFF4463	0.46	-1.6
4,458,537	+		GFF4463	0.46	+0.5
4,458,537	+		GFF4463	0.46	+0.5
4,458,537	+		GFF4463	0.46	-1.0
4,458,537	+		GFF4463	0.46	-0.9
4,458,537	+		GFF4463	0.46	-0.4
4,458,537	+		GFF4463	0.46	-0.1
4,458,545	-		GFF4463	0.48	+1.0
4,458,545	-		GFF4463	0.48	-0.6
4,458,545	-		GFF4463	0.48	-0.5
4,458,545	-		GFF4463	0.48	-0.5
4,458,545	-		GFF4463	0.48	-0.5
4,458,545	-		GFF4463	0.48	+0.3
4,458,545	-		GFF4463	0.48	-0.0
4,458,545	-		GFF4463	0.48	+0.1
4,458,599	-		GFF4463	0.55	+0.9
4,458,606	+		GFF4463	0.56	-1.0
4,458,618	+		GFF4463	0.57	-0.0
4,458,619	-		GFF4463	0.57	+0.4
4,458,620	-		GFF4463	0.58	-1.4
4,458,633	+		GFF4463	0.59	+0.5
4,458,661	+		GFF4463	0.63	+1.2
4,458,666	+		GFF4463	0.64	+1.6
4,458,669	-		GFF4463	0.64	+0.7
4,458,669	-		GFF4463	0.64	+0.4
4,458,679	+		GFF4463	0.65	-0.5
4,458,679	+		GFF4463	0.65	+1.1
4,458,694	-		GFF4463	0.67	+1.1
4,458,718	+		GFF4463	0.71	+0.2
4,458,736	+		GFF4463	0.73	-1.2
4,458,736	+		GFF4463	0.73	-0.3
4,458,736	+		GFF4463	0.73	-1.6
4,458,741	+		GFF4463	0.74	+1.0
4,458,744	-		GFF4463	0.74	-0.2
4,458,744	-		GFF4463	0.74	+1.0
4,458,745	-		GFF4463	0.74	-0.6
4,458,745	-		GFF4463	0.74	-0.7
4,458,749	+		GFF4463	0.75	+1.0
4,458,750	-		GFF4463	0.75	+0.7
4,458,756	-		GFF4463	0.76	-0.5
4,458,775	-		GFF4463	0.78	+1.0
4,458,777	+		GFF4463	0.79	+0.9
4,458,777	+		GFF4463	0.79	+1.6
4,458,780	-		GFF4463	0.79	-0.8
4,458,861	+		GFF4463	0.90	+0.5
4,458,869	-				+0.3
4,458,928	-				-0.6
4,458,931	+				+0.6
4,458,931	+				+0.5
4,458,939	-				-0.5
4,458,939	-				-1.7
4,458,940	+				-0.1
4,458,951	+				+0.5
4,458,952	+				+1.1
4,458,952	+				+0.2
4,458,952	+				-0.6
4,458,952	+				+1.4
4,458,960	-				-1.2
4,458,960	-				-0.8
4,458,960	-				+1.1
4,458,960	-				-1.2
4,458,990	-				+0.9
4,458,992	-				-1.1
4,458,997	-				+1.1
4,458,997	-				+0.3
4,459,007	-				+0.2
4,459,008	+				+0.5
4,459,008	+				+0.4
4,459,008	-				+0.3
4,459,035	-				-1.6
4,459,035	-				+0.7
4,459,036	+				-0.3
4,459,053	-				-0.9
4,459,055	+				+0.2
4,459,055	+				+1.1
4,459,055	+				-0.7
4,459,055	+				+0.8
4,459,055	+				+0.6
4,459,055	+				-1.7
4,459,063	-				+1.0
4,459,063	-				-0.3
4,459,063	-				+0.5
4,459,063	-				+0.6
4,459,063	-				+0.3
4,459,063	-				+0.6
4,459,078	-				+0.7
4,459,114	-				+0.6
4,459,133	-		GFF4464	0.11	-0.4
4,459,147	+		GFF4464	0.15	+0.3
4,459,155	-		GFF4464	0.16	-0.5
4,459,155	-		GFF4464	0.16	+0.4
4,459,162	+		GFF4464	0.18	+0.1
4,459,170	-		GFF4464	0.20	+0.7
4,459,216	+		GFF4464	0.30	-0.6
4,459,218	-		GFF4464	0.31	+1.5
4,459,222	+		GFF4464	0.32	+0.2
4,459,226	+		GFF4464	0.33	+0.9
4,459,226	+		GFF4464	0.33	-1.0
4,459,226	+		GFF4464	0.33	+1.9
4,459,230	+		GFF4464	0.34	-0.3
4,459,234	-		GFF4464	0.34	-0.4
4,459,234	-		GFF4464	0.34	-0.7
4,459,234	-		GFF4464	0.34	+0.3
4,459,238	+		GFF4464	0.35	-1.3
4,459,238	-		GFF4464	0.35	-0.1
4,459,239	-		GFF4464	0.36	+0.6
4,459,251	-		GFF4464	0.38	+0.4
4,459,253	+		GFF4464	0.39	+0.9
4,459,253	+		GFF4464	0.39	-1.0
4,459,261	-		GFF4464	0.41	+1.1
4,459,280	+		GFF4464	0.45	-0.7
4,459,280	+		GFF4464	0.45	+0.7
4,459,332	+		GFF4464	0.57	+0.2
4,459,358	+		GFF4464	0.63	+1.5
4,459,391	+		GFF4464	0.70	+1.2
4,459,397	-		GFF4464	0.72	-0.4
4,459,401	-		GFF4464	0.73	-0.1
4,459,413	-		GFF4464	0.75	-0.2
4,459,527	+				+1.0
4,459,535	-				+0.9
4,459,552	-				+0.5
4,459,552	-				+0.8
4,459,554	+				-0.3
4,459,554	+				+0.1
4,459,557	-				-1.2
4,459,570	+				+0.9
4,459,576	-				-0.2
4,459,648	-		GFF4465	0.25	-0.0
4,459,655	+		GFF4465	0.26	+0.6
4,459,657	+		GFF4465	0.27	+0.5
4,459,686	+		GFF4465	0.33	-0.0
4,459,694	-		GFF4465	0.35	+0.5
4,459,696	+		GFF4465	0.36	-0.3
4,459,701	+		GFF4465	0.37	+0.1
4,459,805	-		GFF4465	0.60	+1.4
4,459,807	+		GFF4465	0.61	+0.5
4,459,815	-		GFF4465	0.62	+0.6
4,459,836	+		GFF4465	0.67	+0.8
4,459,857	-		GFF4465	0.72	+0.3
4,459,887	+		GFF4465	0.79	+0.4
4,459,892	+		GFF4465	0.80	-0.7
4,459,896	+		GFF4465	0.81	+0.9
4,459,918	+		GFF4465	0.86	+0.5
4,459,918	+		GFF4465	0.86	+0.6
4,459,918	+		GFF4465	0.86	-0.1
4,459,918	+		GFF4465	0.86	+0.8
4,459,918	+		GFF4465	0.86	-0.9
4,459,918	+		GFF4465	0.86	-1.7
4,459,918	+		GFF4465	0.86	+1.1
4,459,926	-		GFF4465	0.87	-1.7
4,459,926	-		GFF4465	0.87	+1.2
4,459,926	-		GFF4465	0.87	+0.5