Strain Fitness in Sphingobium sp. HT1-2 around GFF4459

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,453,723	+		GFF4457	0.62	-0.0
4,453,767	+		GFF4457	0.75	+0.3
4,453,768	+		GFF4457	0.76	+0.2
4,453,768	+		GFF4457	0.76	+0.9
4,453,774	-		GFF4457	0.78	-0.2
4,453,776	-		GFF4457	0.78	-0.3
4,453,776	-		GFF4457	0.78	+0.5
4,453,776	-		GFF4457	0.78	-0.0
4,453,776	-		GFF4457	0.78	+0.6
4,453,776	-		GFF4457	0.78	-0.5
4,453,776	-		GFF4457	0.78	+0.0
4,453,776	-		GFF4457	0.78	+1.2
4,453,776	-		GFF4457	0.78	+0.3
4,453,812	+		GFF4457	0.89	+0.7
4,453,812	+		GFF4457	0.89	+0.1
4,453,817	+				+0.2
4,453,857	-				-0.1
4,453,857	-				+0.4
4,453,864	-				+0.4
4,453,873	-				+0.5
4,453,914	+				+0.1
4,453,917	-				+0.7
4,453,917	-				-2.3
4,453,935	-				+1.0
4,453,956	+				-0.3
4,453,963	+				-0.2
4,453,971	-				-0.9
4,453,994	-				+0.3
4,454,014	-				-0.7
4,454,021	+				-1.0
4,454,021	+				-2.0
4,454,021	+				+0.1
4,454,038	+		GFF4458	0.10	+0.1
4,454,044	-		GFF4458	0.12	-2.0
4,454,054	+		GFF4458	0.14	+0.2
4,454,054	+		GFF4458	0.14	-1.0
4,454,090	+		GFF4458	0.23	+0.1
4,454,090	+		GFF4458	0.23	+0.6
4,454,090	+		GFF4458	0.23	-0.2
4,454,090	+		GFF4458	0.23	+0.3
4,454,098	-		GFF4458	0.25	+0.4
4,454,098	-		GFF4458	0.25	+0.7
4,454,098	-		GFF4458	0.25	-0.6
4,454,098	-		GFF4458	0.25	+0.3
4,454,098	-		GFF4458	0.25	+0.6
4,454,098	-		GFF4458	0.25	+1.1
4,454,109	+		GFF4458	0.28	-0.2
4,454,117	-		GFF4458	0.30	+0.4
4,454,117	-		GFF4458	0.30	-0.7
4,454,119	+		GFF4458	0.31	-1.6
4,454,143	+		GFF4458	0.37	+0.3
4,454,159	+		GFF4458	0.41	+1.4
4,454,162	-		GFF4458	0.41	+0.1
4,454,162	-		GFF4458	0.41	+0.9
4,454,165	-		GFF4458	0.42	+1.1
4,454,167	+		GFF4458	0.43	-1.8
4,454,178	+		GFF4458	0.45	+0.0
4,454,207	+		GFF4458	0.52	+1.7
4,454,212	+		GFF4458	0.54	+1.3
4,454,263	-		GFF4458	0.66	+0.1
4,454,267	-		GFF4458	0.67	+0.4
4,454,267	-		GFF4458	0.67	+0.4
4,454,277	-		GFF4458	0.70	-0.0
4,454,279	+		GFF4458	0.70	+0.2
4,454,279	-		GFF4458	0.70	+0.1
4,454,282	-		GFF4458	0.71	+1.5
4,454,287	-		GFF4458	0.72	-0.2
4,454,288	+		GFF4458	0.73	+1.6
4,454,292	-		GFF4458	0.74	+0.5
4,454,292	-		GFF4458	0.74	+0.6
4,454,292	-		GFF4458	0.74	-0.3
4,454,309	+		GFF4458	0.78	+0.2
4,454,317	-		GFF4458	0.80	-0.7
4,454,317	-		GFF4458	0.80	-2.2
4,454,317	-		GFF4458	0.80	-0.9
4,454,317	-		GFF4458	0.80	-0.2
4,454,323	-		GFF4458	0.81	+0.2
4,454,325	+		GFF4458	0.82	-0.2
4,454,328	-		GFF4458	0.83	-1.0
4,454,344	+		GFF4458	0.87	-0.6
4,454,344	+		GFF4458	0.87	+0.6
4,454,352	-		GFF4458	0.89	+1.1
4,454,352	-		GFF4458	0.89	-0.1
4,454,352	-		GFF4458	0.89	+1.4
4,454,352	-		GFF4458	0.89	+0.3
4,454,352	-		GFF4458	0.89	-0.3
4,454,356	-		GFF4458	0.90	-0.1
4,454,361	+				+0.6
4,454,369	-				+0.0
4,454,369	-				-0.8
4,454,369	-				+0.6
4,454,390	-				-0.1
4,454,403	+				-0.1
4,454,403	-				-0.6
4,454,403	-				-0.5
4,454,403	-				-0.6
4,454,411	+				+0.6
4,454,427	-				+0.6
4,454,474	+				-0.6
4,454,487	-				+0.1
4,454,488	+				-0.8
4,454,494	-				-0.5
4,454,509	+				-0.1
4,454,538	-				+0.4
4,454,545	+				+0.7
4,454,553	-				-1.1
4,454,556	+				+0.3
4,454,557	+				-0.9
4,454,565	-				+1.1
4,454,645	+				-0.8
4,454,645	+				+0.7
4,454,667	+				-0.5
4,454,675	-				-0.4
4,454,675	-				+0.7
4,454,677	-				-0.5
4,454,682	-				-2.0
4,454,701	+				-0.4
4,454,701	+				-0.5
4,454,709	-				-1.3
4,454,714	-				-0.4
4,454,714	-				+0.6
4,454,720	+				-0.2
4,454,728	-				+0.1
4,454,758	+		GFF4459	0.13	+0.2
4,454,769	-		GFF4459	0.16	-0.1
4,454,773	+		GFF4459	0.18	-0.6
4,454,799	+		GFF4459	0.27	+1.5
4,454,828	-		GFF4459	0.37	-1.1
4,454,837	+		GFF4459	0.40	+0.6
4,454,837	+		GFF4459	0.40	+1.4
4,454,845	+		GFF4459	0.43	-0.6
4,454,845	+		GFF4459	0.43	+0.4
4,454,845	-		GFF4459	0.43	+1.3
4,454,850	+		GFF4459	0.44	-0.2
4,454,850	+		GFF4459	0.44	-1.2
4,454,858	-		GFF4459	0.47	+0.5
4,454,858	-		GFF4459	0.47	+0.8
4,454,858	-		GFF4459	0.47	+0.7
4,454,858	-		GFF4459	0.47	-0.2
4,454,860	+		GFF4459	0.48	-0.4
4,454,860	+		GFF4459	0.48	+0.5
4,454,868	-		GFF4459	0.51	-0.5
4,454,908	-		GFF4459	0.64	+1.4
4,454,916	+		GFF4459	0.67	+0.3
4,454,947	-		GFF4459	0.78	-1.7
4,454,967	+		GFF4459	0.85	+0.4
4,455,019	-				-0.0
4,455,035	-				-0.6
4,455,039	-				-1.1
4,455,044	+				-2.0
4,455,075	+				+1.0
4,455,081	-				+0.2
4,455,106	-				-0.0
4,455,112	-				-1.8
4,455,118	+				+0.8
4,455,159	-				+1.5
4,455,185	-				-0.2
4,455,187	+				+0.1
4,455,230	+				-0.7
4,455,230	+				-1.8
4,455,238	-				-1.3
4,455,240	+		GFF4460	0.10	+0.0
4,455,248	-		GFF4460	0.17	-2.3
4,455,260	+		GFF4460	0.27	+0.1
4,455,326	-		GFF4460	0.84	-0.0
4,455,329	+		GFF4460	0.86	-1.2
4,455,337	-				+1.5
4,455,352	+				+0.2
4,455,388	+				-1.9
4,455,388	+				+0.3
4,455,393	+				+0.9
4,455,396	-				+1.0
4,455,396	-				+1.1
4,455,401	-				+0.5
4,455,441	-				+0.9
4,455,446	-				-0.4
4,455,455	+				-0.9
4,455,455	+				-1.5
4,455,455	+				+0.7
4,455,463	-				-1.8
4,455,463	-				-0.5
4,455,463	-				-0.0
4,455,463	-				+0.4
4,455,463	-				-0.0
4,455,463	-				+0.9
4,455,463	-				+2.2
4,455,490	-				+0.5
4,455,515	-				-0.8
4,455,522	-				-1.9
4,455,537	-				+0.9
4,455,542	+				+0.1
4,455,542	+				-0.3
4,455,542	+				+1.0
4,455,550	-				-0.1
4,455,566	+				-1.5
4,455,579	+				+0.5
4,455,664	+		GFF4461	0.14	+0.1
4,455,672	-		GFF4461	0.15	-1.0
4,455,672	-		GFF4461	0.15	-1.6
4,455,672	-		GFF4461	0.15	+0.3
4,455,672	-		GFF4461	0.15	+0.9
4,455,673	+		GFF4461	0.15	+0.9
4,455,682	-		GFF4461	0.15	-1.4
4,455,687	+		GFF4461	0.16	-0.0
4,455,710	+		GFF4461	0.17	-0.3
4,455,718	-		GFF4461	0.17	-0.3
4,455,718	-		GFF4461	0.17	+0.7
4,455,727	+		GFF4461	0.18	+0.1
4,455,741	+		GFF4461	0.19	-0.3
4,455,754	-		GFF4461	0.20	+0.1
4,455,770	+		GFF4461	0.21	+0.6
4,455,770	+		GFF4461	0.21	+0.8
4,455,770	+		GFF4461	0.21	-1.7
4,455,778	-		GFF4461	0.21	+0.4
4,455,782	+		GFF4461	0.21	+0.8
4,455,782	+		GFF4461	0.21	-0.7
4,455,782	+		GFF4461	0.21	+0.9
4,455,782	+		GFF4461	0.21	+0.1
4,455,790	-		GFF4461	0.22	-1.1
4,455,790	-		GFF4461	0.22	+0.8
4,455,790	-		GFF4461	0.22	-0.0
4,455,790	-		GFF4461	0.22	-0.5
4,455,790	-		GFF4461	0.22	+0.6
4,455,790	-		GFF4461	0.22	+1.2
4,455,829	-		GFF4461	0.24	-0.2
4,455,834	-		GFF4461	0.24	+0.1
4,455,844	-		GFF4461	0.25	+1.1
4,455,850	-		GFF4461	0.25	-0.4
4,455,867	+		GFF4461	0.26	+0.2
4,455,899	+		GFF4461	0.28	+0.9
4,455,911	-		GFF4461	0.29	+0.3
4,455,921	-		GFF4461	0.30	-1.0
4,455,939	-		GFF4461	0.31	+1.1
4,455,949	-		GFF4461	0.31	+0.5
4,455,950	+		GFF4461	0.31	+0.8
4,455,950	+		GFF4461	0.31	-1.3
4,455,973	+		GFF4461	0.33	+0.4
4,455,986	+		GFF4461	0.33	+0.4
4,455,986	+		GFF4461	0.33	+1.0
4,455,994	-		GFF4461	0.34	-0.1
4,455,994	-		GFF4461	0.34	-0.0
4,455,994	-		GFF4461	0.34	+0.5
4,456,006	-		GFF4461	0.35	-0.9