Strain Fitness in Sphingobium sp. HT1-2 around GFF4409

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,408,064	-		GFF4407	0.75	+0.1
4,408,064	-		GFF4407	0.75	+0.8
4,408,068	+		GFF4407	0.75	+0.8
4,408,068	+		GFF4407	0.75	-0.5
4,408,068	+		GFF4407	0.75	-1.4
4,408,076	-		GFF4407	0.76	+0.8
4,408,081	+		GFF4407	0.76	-0.3
4,408,091	+		GFF4407	0.77	-0.7
4,408,091	+		GFF4407	0.77	+0.4
4,408,091	+		GFF4407	0.77	-1.6
4,408,099	-		GFF4407	0.77	+0.4
4,408,110	+		GFF4407	0.78	+0.9
4,408,127	+		GFF4407	0.80	-0.8
4,408,137	+		GFF4407	0.80	-0.2
4,408,150	+		GFF4407	0.81	-2.1
4,408,162	+		GFF4407	0.82	-0.9
4,408,162	-		GFF4407	0.82	-3.1
4,408,163	-		GFF4407	0.83	+1.2
4,408,174	+		GFF4407	0.83	-2.2
4,408,175	-		GFF4407	0.83	+0.4
4,408,219	+		GFF4407	0.87	-0.6
4,408,227	-		GFF4407	0.88	-0.9
4,408,233	+		GFF4407	0.88	+0.1
4,408,241	-		GFF4407	0.89	+0.4
4,408,255	+		GFF4407	0.90	+0.8
4,408,263	-				+0.6
4,408,264	-				+0.1
4,408,272	+				+1.4
4,408,273	+				-0.6
4,408,274	+				-0.5
4,408,274	+				-0.6
4,408,274	+				+0.3
4,408,281	-				-0.8
4,408,281	-				-0.1
4,408,282	-				+0.2
4,408,282	-				-1.3
4,408,282	-				-1.4
4,408,295	+				-0.2
4,408,303	+				-0.3
4,408,303	-				+0.3
4,408,313	+				-2.7
4,408,336	-				-0.6
4,408,345	-				-0.1
4,408,347	+				-0.6
4,408,350	-				+0.5
4,408,352	+				-0.6
4,408,355	-				+0.2
4,408,355	-				-1.2
4,408,355	-				+0.6
4,408,363	+				-0.4
4,408,363	+				-0.3
4,408,376	+				+0.5
4,408,376	+				+1.0
4,408,376	+				-1.5
4,408,378	+				+0.1
4,408,378	+				+0.0
4,408,378	-				-1.8
4,408,384	-				+0.2
4,408,391	+				-1.4
4,408,397	-				-0.5
4,408,399	-				-1.3
4,408,412	-				-1.5
4,408,439	+				+0.4
4,408,439	-				-1.0
4,408,439	-				-0.7
4,408,439	-				+0.5
4,408,439	-				-0.5
4,408,439	-				+0.5
4,408,447	-				-1.1
4,408,449	-				-2.8
4,408,451	+				-0.1
4,408,456	+		GFF4408	0.10	+0.1
4,408,457	-		GFF4408	0.11	-0.2
4,408,465	-		GFF4408	0.13	+0.7
4,408,489	+		GFF4408	0.18	-0.2
4,408,489	+		GFF4408	0.18	-1.5
4,408,489	+		GFF4408	0.18	-1.6
4,408,489	+		GFF4408	0.18	-0.9
4,408,489	+		GFF4408	0.18	+0.1
4,408,489	+		GFF4408	0.18	-2.1
4,408,489	+		GFF4408	0.18	+0.6
4,408,489	+		GFF4408	0.18	+0.8
4,408,489	+		GFF4408	0.18	-1.3
4,408,497	-		GFF4408	0.20	-0.9
4,408,497	-		GFF4408	0.20	+1.0
4,408,497	-		GFF4408	0.20	-0.0
4,408,497	-		GFF4408	0.20	+0.1
4,408,497	-		GFF4408	0.20	-1.5
4,408,497	-		GFF4408	0.20	-1.8
4,408,497	-		GFF4408	0.20	-1.7
4,408,503	+		GFF4408	0.21	-0.0
4,408,503	+		GFF4408	0.21	-1.6
4,408,511	-		GFF4408	0.23	-0.4
4,408,511	-		GFF4408	0.23	-0.9
4,408,511	-		GFF4408	0.23	-1.2
4,408,517	+		GFF4408	0.25	-0.0
4,408,526	+		GFF4408	0.27	-1.4
4,408,531	-		GFF4408	0.28	-0.2
4,408,576	+		GFF4408	0.38	+1.2
4,408,620	-		GFF4408	0.49	+0.0
4,408,632	+		GFF4408	0.52	-1.0
4,408,637	+		GFF4408	0.53	+0.3
4,408,645	-		GFF4408	0.55	+0.9
4,408,645	-		GFF4408	0.55	-0.6
4,408,645	-		GFF4408	0.55	+0.0
4,408,645	-		GFF4408	0.55	+0.9
4,408,660	+		GFF4408	0.58	-0.8
4,408,660	+		GFF4408	0.58	-1.4
4,408,660	+		GFF4408	0.58	+0.7
4,408,662	+		GFF4408	0.59	-2.0
4,408,667	-		GFF4408	0.60	+0.7
4,408,668	-		GFF4408	0.60	-0.5
4,408,668	-		GFF4408	0.60	+0.7
4,408,670	-		GFF4408	0.60	-0.5
4,408,679	+		GFF4408	0.62	-0.6
4,408,681	-		GFF4408	0.63	-0.7
4,408,693	+		GFF4408	0.66	+0.3
4,408,693	+		GFF4408	0.66	-1.0
4,408,697	+		GFF4408	0.67	+0.2
4,408,700	-		GFF4408	0.67	-1.0
4,408,700	-		GFF4408	0.67	+0.4
4,408,701	-		GFF4408	0.68	+0.6
4,408,701	-		GFF4408	0.68	-0.7
4,408,703	-		GFF4408	0.68	-0.0
4,408,704	+		GFF4408	0.68	+1.0
4,408,704	+		GFF4408	0.68	-1.1
4,408,704	+		GFF4408	0.68	-0.6
4,408,704	+		GFF4408	0.68	-0.9
4,408,704	+		GFF4408	0.68	-0.1
4,408,712	-		GFF4408	0.70	+1.3
4,408,712	-		GFF4408	0.70	-1.5
4,408,712	-		GFF4408	0.70	+0.2
4,408,712	-		GFF4408	0.70	-0.6
4,408,712	-		GFF4408	0.70	-0.1
4,408,712	-		GFF4408	0.70	-0.5
4,408,712	-		GFF4408	0.70	+0.7
4,408,712	-		GFF4408	0.70	+0.9
4,408,712	-		GFF4408	0.70	-0.3
4,408,719	+		GFF4408	0.72	-0.3
4,408,719	+		GFF4408	0.72	-0.6
4,408,719	+		GFF4408	0.72	-0.3
4,408,724	+		GFF4408	0.73	+1.4
4,408,727	-		GFF4408	0.74	-0.1
4,408,727	-		GFF4408	0.74	-1.6
4,408,727	-		GFF4408	0.74	-0.9
4,408,727	-		GFF4408	0.74	-1.4
4,408,729	+		GFF4408	0.74	+0.7
4,408,732	-		GFF4408	0.75	-0.3
4,408,734	-		GFF4408	0.75	-0.3
4,408,737	-		GFF4408	0.76	-1.2
4,408,737	-		GFF4408	0.76	-1.7
4,408,737	-		GFF4408	0.76	-0.5
4,408,747	+		GFF4408	0.78	+0.4
4,408,751	+		GFF4408	0.79	-2.3
4,408,751	+		GFF4408	0.79	-0.4
4,408,755	-		GFF4408	0.80	-2.0
4,408,757	+		GFF4408	0.81	+0.6
4,408,764	+		GFF4408	0.82	+0.9
4,408,771	+		GFF4408	0.84	-0.7
4,408,790	-		GFF4408	0.88	-1.5
4,408,790	-		GFF4408	0.88	-0.3
4,408,808	+				+0.0
4,408,808	+				+0.2
4,408,812	-				-1.5
4,408,828	+				+0.5
4,408,857	-				-2.0
4,408,860	+				+0.8
4,408,876	+				-0.5
4,408,876	+				+0.7
4,408,876	+				-2.0
4,408,879	+				-0.4
4,408,884	-				-0.0
4,408,887	+				-0.8
4,408,893	+				-0.0
4,408,928	-				-0.8
4,408,934	-				-0.2
4,408,967	-				-0.4
4,408,997	-				+0.8
4,409,007	+				-0.9
4,409,015	+				-0.3
4,409,023	-				-2.0
4,409,027	+				-1.4
4,409,030	-				-0.9
4,409,030	-				-3.2
4,409,030	-				+0.2
4,409,032	+				-0.3
4,409,032	+				-1.0
4,409,032	+				+1.4
4,409,032	+				+1.3
4,409,032	+				-0.2
4,409,032	+				+0.2
4,409,032	+				-0.7
4,409,032	+				-0.4
4,409,032	+				+0.8
4,409,032	+				-0.2
4,409,035	+				+0.1
4,409,035	-				+0.9
4,409,035	-				-0.4
4,409,035	-				-1.7
4,409,037	+				-0.2
4,409,037	+				-0.5
4,409,040	-				-1.6
4,409,040	-				-0.5
4,409,040	-				-0.3
4,409,040	-				+1.2
4,409,040	-				-0.6
4,409,040	-				+0.2
4,409,040	-				-0.3
4,409,042	+				-1.0
4,409,042	+				+1.2
4,409,042	+				+1.0
4,409,042	+				-1.9
4,409,042	+				-1.2
4,409,042	+				+0.2
4,409,042	+				+0.3
4,409,042	+				-0.6
4,409,045	-				-0.6
4,409,045	-				+1.3
4,409,047	+				+0.6
4,409,050	-				-0.7
4,409,050	-				+0.2
4,409,050	-				+0.3
4,409,050	-				-0.1
4,409,051	-				-1.0
4,409,058	-				-0.7
4,409,058	-				-0.8
4,409,090	-		GFF4409	0.18	-2.3
4,409,092	-		GFF4409	0.19	+0.4
4,409,118	+		GFF4409	0.32	-0.9
4,409,118	+		GFF4409	0.32	-0.5
4,409,118	+		GFF4409	0.32	+1.3
4,409,130	+		GFF4409	0.38	-1.7
4,409,131	+		GFF4409	0.38	-0.0
4,409,141	+		GFF4409	0.43	-0.4
4,409,164	+		GFF4409	0.54	-0.3
4,409,164	+		GFF4409	0.54	-0.3
4,409,172	-		GFF4409	0.58	+1.3
4,409,174	+		GFF4409	0.59	+0.8
4,409,179	+		GFF4409	0.61	-0.9
4,409,182	-		GFF4409	0.63	+0.1
4,409,184	+		GFF4409	0.64	+0.2
4,409,187	+		GFF4409	0.65	-0.7
4,409,189	+		GFF4409	0.66	-0.3
4,409,197	-		GFF4409	0.70	+0.4
4,409,197	-		GFF4409	0.70	-1.5
4,409,202	-		GFF4409	0.72	-0.2
4,409,202	-		GFF4409	0.72	+0.4
4,409,202	-		GFF4409	0.72	-1.0
4,409,202	-		GFF4409	0.72	-0.4
4,409,207	-		GFF4409	0.75	-0.8
4,409,291	+				-0.1
4,409,291	+				-0.2
4,409,300	-				-1.4
4,409,301	+				+0.3
4,409,301	+				-0.3
4,409,312	+				-0.5
4,409,317	+				+0.2
4,409,317	+				+0.8
4,409,317	+				-0.8
4,409,355	-		GFF4410	0.15	+0.5
4,409,365	-		GFF4410	0.19	-0.5
4,409,367	+		GFF4410	0.19	-0.1
4,409,468	-		GFF4410	0.56	-0.7
4,409,482	-		GFF4410	0.62	-0.2
4,409,482	-		GFF4410	0.62	-0.7
4,409,494	-		GFF4410	0.66	-0.3
4,409,496	-		GFF4410	0.67	-0.0
4,409,499	+		GFF4410	0.68	-0.3
4,409,512	-		GFF4410	0.73	-1.1
4,409,513	-		GFF4410	0.73	-0.0
4,409,532	+		GFF4410	0.80	-1.1
4,409,534	+		GFF4410	0.81	-0.1
4,409,542	-		GFF4410	0.84	+1.3
4,409,542	-		GFF4410	0.84	-1.0
4,409,542	-		GFF4410	0.84	-2.4
4,409,551	+		GFF4410	0.87	+0.6
4,409,551	+		GFF4410	0.87	-1.1
4,409,551	+		GFF4410	0.87	+0.6
4,409,559	-				-0.3
4,409,559	-				+0.2
4,409,559	-				-0.6
4,409,577	-				-0.5
4,409,581	+				-0.3
4,409,592	-				+0.7
4,409,592	-				+0.5
4,409,592	-				-2.0
4,409,594	-				-1.6
4,409,603	+				-0.1
4,409,617	+				-1.0
4,409,617	+				-0.0
4,409,617	+				-2.8
4,409,617	+				-2.0
4,409,617	+				-1.2
4,409,623	-				-2.3
4,409,625	-				+0.4
4,409,625	-				-0.4
4,409,625	-				-1.9
4,409,630	-				-0.9
4,409,630	-				+0.4
4,409,645	-				-1.0
4,409,665	-		GFF4411	0.11	-1.9
4,409,683	-		GFF4411	0.14	-0.8
4,409,693	+		GFF4411	0.15	+0.2
4,409,698	-		GFF4411	0.16	-0.8
4,409,727	+		GFF4411	0.20	-0.1
4,409,727	+		GFF4411	0.20	+0.3
4,409,727	+		GFF4411	0.20	+0.3
4,409,728	-		GFF4411	0.20	-0.4
4,409,730	-		GFF4411	0.21	+0.7
4,409,730	-		GFF4411	0.21	+0.3
4,409,737	+		GFF4411	0.22	+0.4
4,409,737	+		GFF4411	0.22	+0.7
4,409,737	+		GFF4411	0.22	-0.9
4,409,737	+		GFF4411	0.22	-0.2
4,409,737	+		GFF4411	0.22	+0.9
4,409,737	+		GFF4411	0.22	-1.5
4,409,737	+		GFF4411	0.22	+0.6
4,409,739	+		GFF4411	0.22	-1.4
4,409,745	+		GFF4411	0.23	-0.6
4,409,745	+		GFF4411	0.23	-0.7
4,409,745	-		GFF4411	0.23	-1.8
4,409,745	-		GFF4411	0.23	+0.2
4,409,745	-		GFF4411	0.23	-0.0
4,409,745	-		GFF4411	0.23	-0.5
4,409,745	-		GFF4411	0.23	-0.2
4,409,745	-		GFF4411	0.23	+0.2
4,409,755	+		GFF4411	0.24	+0.0
4,409,755	+		GFF4411	0.24	+0.8
4,409,755	+		GFF4411	0.24	-0.9
4,409,755	+		GFF4411	0.24	-0.0
4,409,755	+		GFF4411	0.24	+0.8
4,409,755	+		GFF4411	0.24	-0.2
4,409,755	+		GFF4411	0.24	+0.8
4,409,755	+		GFF4411	0.24	-0.1
4,409,755	+		GFF4411	0.24	+0.8
4,409,760	+		GFF4411	0.25	-1.3
4,409,763	-		GFF4411	0.25	-1.8
4,409,763	-		GFF4411	0.25	-0.1
4,409,763	-		GFF4411	0.25	-0.2
4,409,763	-		GFF4411	0.25	-0.8
4,409,763	-		GFF4411	0.25	-0.6
4,409,763	-		GFF4411	0.25	+0.4
4,409,763	-		GFF4411	0.25	+0.1
4,409,765	-		GFF4411	0.26	-0.5
4,409,765	-		GFF4411	0.26	-0.6
4,409,791	+		GFF4411	0.30	+0.2
4,409,799	-		GFF4411	0.31	-0.5
4,409,812	-		GFF4411	0.33	-1.5
4,409,812	-		GFF4411	0.33	+1.4
4,409,816	-		GFF4411	0.33	+0.5
4,409,817	-		GFF4411	0.33	-0.0
4,409,818	+		GFF4411	0.33	+0.5
4,409,818	+		GFF4411	0.33	+0.8
4,409,818	+		GFF4411	0.33	-1.0
4,409,818	+		GFF4411	0.33	-0.3
4,409,818	+		GFF4411	0.33	-0.2
4,409,818	+		GFF4411	0.33	+0.5
4,409,818	+		GFF4411	0.33	+0.4
4,409,818	+		GFF4411	0.33	+0.1
4,409,824	+		GFF4411	0.34	-0.0
4,409,824	+		GFF4411	0.34	-0.7
4,409,824	+		GFF4411	0.34	-0.0
4,409,824	+		GFF4411	0.34	+0.7
4,409,826	-		GFF4411	0.35	+0.9
4,409,826	-		GFF4411	0.35	-0.9
4,409,826	-		GFF4411	0.35	-0.2
4,409,826	-		GFF4411	0.35	-0.2
4,409,826	-		GFF4411	0.35	+0.1
4,409,826	-		GFF4411	0.35	-0.7
4,409,826	-		GFF4411	0.35	+0.2
4,409,830	+		GFF4411	0.35	-2.1
4,409,830	+		GFF4411	0.35	-0.4
4,409,830	+		GFF4411	0.35	-0.4
4,409,830	+		GFF4411	0.35	+0.5
4,409,831	-		GFF4411	0.35	-2.7
4,409,832	+		GFF4411	0.36	-1.2
4,409,832	-		GFF4411	0.36	-1.9
4,409,838	-		GFF4411	0.36	+0.8
4,409,838	-		GFF4411	0.36	-1.6
4,409,838	-		GFF4411	0.36	+1.3
4,409,861	-		GFF4411	0.40	-0.2
4,409,883	+		GFF4411	0.43	+0.5
4,409,914	+		GFF4411	0.47	-1.6
4,409,919	+		GFF4411	0.48	-1.8
4,409,921	+		GFF4411	0.48	-0.5
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