Strain Fitness in Sphingobium sp. HT1-2 around GFF4404

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,404,040	+		GFF4401	0.82	+1.4
4,404,082	-				-1.5
4,404,097	+				+0.6
4,404,118	+				-1.2
4,404,124	+				-0.6
4,404,124	+				+0.4
4,404,125	+				+0.2
4,404,126	-				+0.7
4,404,141	-				-1.8
4,404,143	+				+0.2
4,404,154	+				-0.5
4,404,198	-		GFF4402	0.23	-1.3
4,404,203	-		GFF4402	0.24	-0.5
4,404,215	+		GFF4402	0.28	-0.9
4,404,215	+		GFF4402	0.28	+0.2
4,404,215	+		GFF4402	0.28	-1.4
4,404,215	+		GFF4402	0.28	-0.3
4,404,215	+		GFF4402	0.28	+0.4
4,404,220	+		GFF4402	0.30	+0.1
4,404,220	+		GFF4402	0.30	-0.4
4,404,220	+		GFF4402	0.30	+0.4
4,404,223	-		GFF4402	0.31	-1.2
4,404,228	+		GFF4402	0.32	-0.3
4,404,257	-		GFF4402	0.42	+0.7
4,404,257	-		GFF4402	0.42	+0.5
4,404,308	-		GFF4402	0.58	+0.4
4,404,321	+		GFF4402	0.62	-1.3
4,404,321	+		GFF4402	0.62	+0.1
4,404,326	+		GFF4402	0.64	-2.1
4,404,326	+		GFF4402	0.64	+0.5
4,404,326	+		GFF4402	0.64	-0.3
4,404,326	+		GFF4402	0.64	+1.6
4,404,338	+		GFF4402	0.68	+0.7
4,404,358	+		GFF4402	0.74	-0.7
4,404,358	+		GFF4402	0.74	-0.7
4,404,374	+		GFF4402	0.79	-2.7
4,404,382	-		GFF4402	0.82	+0.2
4,404,382	-		GFF4402	0.82	+0.3
4,404,386	+		GFF4402	0.83	-1.2
4,404,486	+				-0.5
4,404,486	+				-0.4
4,404,511	+				+0.9
4,404,525	+				-0.4
4,404,530	+				-0.7
4,404,537	+				-1.9
4,404,537	+				-0.7
4,404,542	+				+1.3
4,404,549	+				+0.6
4,404,578	-				-1.4
4,404,580	+				-0.5
4,404,583	-				+0.2
4,404,592	+				+1.5
4,404,592	+				-1.3
4,404,598	+				-1.2
4,404,604	-				-0.6
4,404,611	-				-0.9
4,404,636	+				+0.0
4,404,644	+				-0.0
4,404,651	-				-0.3
4,404,652	-				-0.4
4,404,662	-				-1.3
4,404,679	-				-1.3
4,404,698	-				+0.6
4,404,716	+				-1.1
4,404,716	+				+0.0
4,404,735	-				-2.5
4,404,740	-				-1.4
4,404,748	+				+1.2
4,404,794	+				-1.0
4,404,812	-				-0.4
4,404,814	+				-1.2
4,404,814	+				+0.4
4,404,814	+				+1.1
4,404,820	+				-0.3
4,404,822	-				+0.1
4,404,826	-				-0.2
4,404,826	-				+0.8
4,404,863	+				+0.1
4,404,863	+				+0.7
4,404,863	+				-0.6
4,404,863	+				-0.6
4,404,869	+		GFF4403	0.11	-2.1
4,404,871	-		GFF4403	0.12	+0.0
4,404,871	-		GFF4403	0.12	-0.5
4,404,871	-		GFF4403	0.12	+0.6
4,404,871	-		GFF4403	0.12	+0.1
4,404,871	-		GFF4403	0.12	+0.5
4,404,871	-		GFF4403	0.12	-1.0
4,404,901	+		GFF4403	0.31	-0.3
4,404,901	+		GFF4403	0.31	-1.9
4,404,904	-		GFF4403	0.33	-1.0
4,404,906	+		GFF4403	0.35	+0.6
4,404,909	-		GFF4403	0.37	-1.1
4,404,919	-		GFF4403	0.43	-1.4
4,404,919	-		GFF4403	0.43	-1.5
4,404,951	+		GFF4403	0.63	+0.8
4,404,952	+		GFF4403	0.64	-0.5
4,404,988	+		GFF4403	0.87	-1.5
4,404,996	-				-0.4
4,405,013	+				-1.4
4,405,033	-		GFF4404	0.22	-0.5
4,405,041	-		GFF4404	0.29	-1.8
4,405,121	+				-2.3
4,405,135	+				-0.6
4,405,137	-				-0.2
4,405,139	-				-0.1
4,405,165	+				-0.3
4,405,165	+				+1.3
4,405,165	+				+0.3
4,405,168	+				-1.0
4,405,168	-				+0.0
4,405,173	+				+0.0
4,405,173	-				-0.4
4,405,173	-				-0.5
4,405,173	-				-2.0
4,405,242	-				-0.7
4,405,242	-				+0.2
4,405,249	-				-0.7
4,405,262	+				-0.3
4,405,270	-				-1.1
4,405,270	-				+0.8
4,405,296	-				-0.3
4,405,529	+				+0.3
4,405,531	+				+0.8
4,405,541	+				-0.3
4,405,558	+				-0.6
4,405,569	+				-1.7
4,405,569	+				-1.1
4,405,569	+				-0.3
4,405,569	+				+2.1
4,405,569	+				-1.3
4,405,577	-		GFF4405	0.10	+0.9
4,405,577	-		GFF4405	0.10	+0.8
4,405,577	-		GFF4405	0.10	+0.9
4,405,605	-		GFF4405	0.13	+1.1
4,405,607	+		GFF4405	0.13	-1.2
4,405,610	-		GFF4405	0.13	+0.2
4,405,610	-		GFF4405	0.13	+0.0
4,405,611	-		GFF4405	0.13	+0.6
4,405,614	+		GFF4405	0.14	+0.7
4,405,617	-		GFF4405	0.14	-0.8
4,405,647	-		GFF4405	0.16	-0.3
4,405,647	-		GFF4405	0.16	-0.1
4,405,650	+		GFF4405	0.17	-1.5
4,405,659	+		GFF4405	0.17	+0.3
4,405,664	+		GFF4405	0.18	+0.1
4,405,673	-		GFF4405	0.18	+0.5
4,405,681	-		GFF4405	0.19	+0.4
4,405,694	-		GFF4405	0.20	-1.4
4,405,709	+		GFF4405	0.21	+1.5
4,405,709	+		GFF4405	0.21	-1.6
4,405,717	-		GFF4405	0.22	+1.2
4,405,717	-		GFF4405	0.22	+0.7
4,405,717	-		GFF4405	0.22	+0.5
4,405,719	+		GFF4405	0.22	-0.1
4,405,724	+		GFF4405	0.23	-1.1
4,405,727	-		GFF4405	0.23	-0.0
4,405,727	-		GFF4405	0.23	-1.0
4,405,727	-		GFF4405	0.23	+0.7
4,405,727	-		GFF4405	0.23	-0.5
4,405,727	-		GFF4405	0.23	-0.4
4,405,729	+		GFF4405	0.23	-1.1
4,405,729	+		GFF4405	0.23	-0.3
4,405,729	+		GFF4405	0.23	-0.3
4,405,737	-		GFF4405	0.24	-0.2
4,405,737	-		GFF4405	0.24	-0.7
4,405,737	-		GFF4405	0.24	-1.3
4,405,737	-		GFF4405	0.24	-1.5
4,405,748	+		GFF4405	0.25	-0.0
4,405,751	-		GFF4405	0.25	+1.0
4,405,752	+		GFF4405	0.25	+0.1
4,405,752	+		GFF4405	0.25	-0.3
4,405,760	-		GFF4405	0.26	+0.0
4,405,761	+		GFF4405	0.26	+0.4
4,405,771	+		GFF4405	0.26	+0.3
4,405,784	-		GFF4405	0.28	+0.7
4,405,798	+		GFF4405	0.29	-1.2
4,405,803	+		GFF4405	0.29	+1.2
4,405,809	+		GFF4405	0.30	+1.5
4,405,809	+		GFF4405	0.30	-0.5
4,405,809	+		GFF4405	0.30	-0.1
4,405,811	-		GFF4405	0.30	-1.1
4,405,811	-		GFF4405	0.30	-0.8
4,405,830	+		GFF4405	0.31	+0.2
4,405,831	+		GFF4405	0.31	-2.0
4,405,838	-		GFF4405	0.32	-0.3
4,405,838	-		GFF4405	0.32	+0.7
4,405,844	+		GFF4405	0.33	-2.0
4,405,844	+		GFF4405	0.33	+0.3
4,405,844	+		GFF4405	0.33	+0.3
4,405,844	+		GFF4405	0.33	+0.8
4,405,844	+		GFF4405	0.33	-0.2
4,405,844	+		GFF4405	0.33	-0.1
4,405,844	+		GFF4405	0.33	-1.7
4,405,844	+		GFF4405	0.33	-1.4
4,405,852	-		GFF4405	0.33	+1.1
4,405,852	-		GFF4405	0.33	-0.2
4,405,852	-		GFF4405	0.33	+0.7
4,405,852	-		GFF4405	0.33	+0.0
4,405,852	-		GFF4405	0.33	+1.1
4,405,852	-		GFF4405	0.33	-0.9
4,405,852	-		GFF4405	0.33	-0.5
4,405,852	-		GFF4405	0.33	-0.0
4,405,854	+		GFF4405	0.33	-0.1
4,405,854	+		GFF4405	0.33	-0.8
4,405,862	-		GFF4405	0.34	+0.1
4,405,862	-		GFF4405	0.34	-0.5
4,405,875	+		GFF4405	0.35	+0.4
4,405,877	+		GFF4405	0.35	-0.1
4,405,883	-		GFF4405	0.36	+1.1
4,405,883	-		GFF4405	0.36	+0.6
4,405,884	-		GFF4405	0.36	+1.1
4,405,885	+		GFF4405	0.36	-0.4
4,405,886	+		GFF4405	0.36	-0.3
4,405,893	-		GFF4405	0.37	-0.3
4,405,895	-		GFF4405	0.37	-0.3
4,405,909	+		GFF4405	0.38	+0.5
4,405,913	+		GFF4405	0.38	+0.9
4,405,913	+		GFF4405	0.38	+1.1
4,405,914	+		GFF4405	0.38	-0.4
4,405,914	+		GFF4405	0.38	+0.9
4,405,917	-		GFF4405	0.39	-1.5
4,405,919	+		GFF4405	0.39	+0.7
4,405,920	+		GFF4405	0.39	-0.9
4,405,920	+		GFF4405	0.39	-1.4
4,405,921	-		GFF4405	0.39	+0.1
4,405,922	-		GFF4405	0.39	+0.5
4,405,922	-		GFF4405	0.39	+0.5
4,405,923	-		GFF4405	0.39	-0.6
4,405,925	+		GFF4405	0.39	-0.7
4,405,928	-		GFF4405	0.39	-0.3
4,405,928	-		GFF4405	0.39	+0.7
4,405,928	-		GFF4405	0.39	-0.5
4,405,928	-		GFF4405	0.39	-1.6
4,405,933	-		GFF4405	0.40	-1.2
4,405,933	-		GFF4405	0.40	-0.4
4,405,940	+		GFF4405	0.40	-0.0
4,405,940	+		GFF4405	0.40	+0.6
4,405,940	+		GFF4405	0.40	+0.0
4,405,940	+		GFF4405	0.40	+1.5
4,405,940	+		GFF4405	0.40	-0.5
4,405,940	+		GFF4405	0.40	-0.1
4,405,940	+		GFF4405	0.40	-0.5
4,405,940	+		GFF4405	0.40	-1.2
4,405,940	+		GFF4405	0.40	+0.5
4,405,940	+		GFF4405	0.40	-0.7
4,405,940	+		GFF4405	0.40	-0.7
4,405,940	+		GFF4405	0.40	-2.1
4,405,940	+		GFF4405	0.40	+1.5
4,405,940	+		GFF4405	0.40	+0.2
4,405,940	+		GFF4405	0.40	-1.2
4,405,940	+		GFF4405	0.40	-0.6
4,405,940	+		GFF4405	0.40	-0.6
4,405,940	+		GFF4405	0.40	+0.3
4,405,940	+		GFF4405	0.40	+0.8
4,405,940	+		GFF4405	0.40	+1.7
4,405,940	+		GFF4405	0.40	-0.7
4,405,941	+		GFF4405	0.41	-0.3
4,405,948	-		GFF4405	0.41	-0.2
4,405,948	-		GFF4405	0.41	-0.4
4,405,948	-		GFF4405	0.41	+0.3
4,405,948	-		GFF4405	0.41	-0.3
4,405,948	-		GFF4405	0.41	-1.5
4,405,948	-		GFF4405	0.41	+0.1
4,405,948	-		GFF4405	0.41	-0.7
4,405,948	-		GFF4405	0.41	-0.1
4,405,948	-		GFF4405	0.41	-0.8
4,405,948	-		GFF4405	0.41	-0.7
4,405,948	-		GFF4405	0.41	+0.0
4,405,948	-		GFF4405	0.41	-0.5
4,405,948	-		GFF4405	0.41	-1.9
4,405,948	-		GFF4405	0.41	-1.9
4,405,948	-		GFF4405	0.41	-1.3
4,405,948	-		GFF4405	0.41	-0.7
4,405,964	-		GFF4405	0.42	-0.5
4,406,012	-		GFF4405	0.46	+0.9
4,406,018	-		GFF4405	0.47	-1.1
4,406,051	+		GFF4405	0.50	+0.4
4,406,053	+		GFF4405	0.50	+0.7
4,406,056	+		GFF4405	0.50	-0.2
4,406,061	-		GFF4405	0.50	+0.6
4,406,066	+		GFF4405	0.51	+0.5
4,406,066	+		GFF4405	0.51	-0.7
4,406,069	-		GFF4405	0.51	-0.4
4,406,069	-		GFF4405	0.51	-1.6
4,406,075	+		GFF4405	0.52	+0.6
4,406,106	-		GFF4405	0.54	-0.2
4,406,116	-		GFF4405	0.55	+0.4
4,406,116	-		GFF4405	0.55	+0.8
4,406,116	-		GFF4405	0.55	+0.7
4,406,116	-		GFF4405	0.55	-0.2
4,406,116	-		GFF4405	0.55	-1.6
4,406,116	-		GFF4405	0.55	-1.9
4,406,116	-		GFF4405	0.55	+0.1