Strain Fitness in Sphingobium sp. HT1-2 around GFF4380

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,380,159	+		GFF4377	0.70	-0.0
4,380,159	+		GFF4377	0.70	-0.7
4,380,159	+		GFF4377	0.70	+0.5
4,380,159	+		GFF4377	0.70	+0.5
4,380,159	+		GFF4377	0.70	-1.5
4,380,159	+		GFF4377	0.70	+0.4
4,380,159	+		GFF4377	0.70	-1.0
4,380,159	+		GFF4377	0.70	+1.3
4,380,159	+		GFF4377	0.70	-1.0
4,380,159	+		GFF4377	0.70	-1.0
4,380,159	+		GFF4377	0.70	-0.0
4,380,159	+		GFF4377	0.70	+0.8
4,380,159	+		GFF4377	0.70	+0.1
4,380,165	+		GFF4377	0.71	+0.3
4,380,167	-		GFF4377	0.71	+0.2
4,380,167	-		GFF4377	0.71	-1.4
4,380,167	-		GFF4377	0.71	-0.7
4,380,167	-		GFF4377	0.71	-1.4
4,380,167	-		GFF4377	0.71	-1.9
4,380,167	-		GFF4377	0.71	-0.6
4,380,167	-		GFF4377	0.71	+0.7
4,380,167	-		GFF4377	0.71	-1.8
4,380,167	-		GFF4377	0.71	-0.6
4,380,167	-		GFF4377	0.71	-0.4
4,380,167	-		GFF4377	0.71	+0.6
4,380,167	-		GFF4377	0.71	-1.0
4,380,167	-		GFF4377	0.71	+0.6
4,380,171	+		GFF4377	0.72	+0.5
4,380,179	-		GFF4377	0.73	+0.6
4,380,184	+		GFF4377	0.74	-1.6
4,380,193	+		GFF4377	0.76	-0.2
4,380,280	+		GFF4377	0.90	-1.7
4,380,282	+				-1.5
4,380,288	+				-0.0
4,380,288	-				+1.0
4,380,288	-				+1.0
4,380,291	+				-1.2
4,380,291	+				-0.6
4,380,291	+				-0.3
4,380,291	+				+0.8
4,380,299	+				-1.7
4,380,299	-				-0.9
4,380,299	-				+1.0
4,380,299	-				-0.9
4,380,299	-				+0.6
4,380,307	+				-0.9
4,380,314	+				-0.5
4,380,315	-				+0.3
4,380,315	-				-1.7
4,380,321	+				-0.2
4,380,331	+				+1.7
4,380,331	+				-1.4
4,380,339	-				-0.5
4,380,339	-				+0.7
4,380,339	-				-2.4
4,380,339	-				+0.6
4,380,339	-				-2.0
4,380,344	-				-1.9
4,380,352	+				+1.1
4,380,368	-				-0.4
4,380,369	+				-1.5
4,380,370	+				+0.5
4,380,372	-				-0.4
4,380,387	+				+0.3
4,380,388	+				-0.7
4,380,388	+				+0.8
4,380,398	-		GFF4378	0.11	+0.1
4,380,403	+		GFF4378	0.14	-0.6
4,380,403	+		GFF4378	0.14	-0.9
4,380,406	-		GFF4378	0.15	-1.7
4,380,412	-		GFF4378	0.18	+0.7
4,380,428	-		GFF4378	0.26	-0.6
4,380,428	-		GFF4378	0.26	-0.4
4,380,428	-		GFF4378	0.26	-0.6
4,380,430	-		GFF4378	0.27	+0.6
4,380,430	-		GFF4378	0.27	-0.5
4,380,439	-		GFF4378	0.31	+0.6
4,380,443	+		GFF4378	0.33	-0.9
4,380,443	+		GFF4378	0.33	+0.2
4,380,451	-		GFF4378	0.37	+0.3
4,380,451	-		GFF4378	0.37	+1.1
4,380,453	+		GFF4378	0.38	-2.2
4,380,461	+		GFF4378	0.42	+0.6
4,380,466	+		GFF4378	0.44	-0.0
4,380,475	+		GFF4378	0.48	-2.4
4,380,479	-		GFF4378	0.50	-1.6
4,380,479	-		GFF4378	0.50	-1.1
4,380,483	-		GFF4378	0.52	+1.3
4,380,499	+		GFF4378	0.60	-0.6
4,380,499	+		GFF4378	0.60	-0.4
4,380,499	+		GFF4378	0.60	+0.1
4,380,507	-		GFF4378	0.64	-0.4
4,380,507	-		GFF4378	0.64	-1.2
4,380,507	-		GFF4378	0.64	-1.3
4,380,509	+		GFF4378	0.65	-1.9
4,380,509	+		GFF4378	0.65	-0.5
4,380,510	+		GFF4378	0.65	-0.4
4,380,510	+		GFF4378	0.65	-0.4
4,380,517	-		GFF4378	0.69	-0.3
4,380,517	-		GFF4378	0.69	-0.9
4,380,518	-		GFF4378	0.69	-0.0
4,380,518	-		GFF4378	0.69	+0.2
4,380,518	-		GFF4378	0.69	+0.6
4,380,518	-		GFF4378	0.69	-1.0
4,380,528	+		GFF4378	0.74	+0.0
4,380,533	-		GFF4378	0.76	-0.2
4,380,564	+				+0.2
4,380,564	+				-1.0
4,380,575	+				-1.1
4,380,577	+				-0.2
4,380,583	-				+0.7
4,380,585	-				-0.2
4,380,608	+				+0.2
4,380,636	-		GFF4379	0.11	+1.0
4,380,641	+		GFF4379	0.12	-0.2
4,380,641	-		GFF4379	0.12	-1.7
4,380,645	+		GFF4379	0.13	-1.2
4,380,646	-		GFF4379	0.13	-1.1
4,380,646	-		GFF4379	0.13	+0.3
4,380,650	+		GFF4379	0.14	-0.4
4,380,658	-		GFF4379	0.16	-0.9
4,380,667	+		GFF4379	0.17	+0.1
4,380,667	+		GFF4379	0.17	-0.4
4,380,670	-		GFF4379	0.18	-0.9
4,380,675	-		GFF4379	0.19	-0.5
4,380,675	-		GFF4379	0.19	+0.1
4,380,675	-		GFF4379	0.19	-0.6
4,380,675	-		GFF4379	0.19	-1.2
4,380,690	-		GFF4379	0.22	-0.2
4,380,702	+		GFF4379	0.24	-0.7
4,380,702	+		GFF4379	0.24	+0.5
4,380,702	+		GFF4379	0.24	+0.5
4,380,702	+		GFF4379	0.24	-0.2
4,380,702	+		GFF4379	0.24	+0.7
4,380,702	+		GFF4379	0.24	+0.0
4,380,702	+		GFF4379	0.24	+1.7
4,380,710	-		GFF4379	0.26	+0.9
4,380,710	-		GFF4379	0.26	-1.0
4,380,710	-		GFF4379	0.26	+0.8
4,380,712	+		GFF4379	0.26	-0.5
4,380,712	+		GFF4379	0.26	+0.7
4,380,712	+		GFF4379	0.26	-1.0
4,380,715	-		GFF4379	0.27	-0.5
4,380,753	-		GFF4379	0.34	-0.3
4,380,757	+		GFF4379	0.35	-2.2
4,380,757	+		GFF4379	0.35	-2.4
4,380,765	-		GFF4379	0.36	-3.3
4,380,790	+		GFF4379	0.41	+0.5
4,380,798	-		GFF4379	0.43	-0.0
4,380,798	-		GFF4379	0.43	+0.1
4,380,798	-		GFF4379	0.43	-0.9
4,380,798	-		GFF4379	0.43	-1.5
4,380,809	-		GFF4379	0.45	-2.6
4,380,817	-		GFF4379	0.46	-0.6
4,380,822	+		GFF4379	0.47	+0.4
4,380,828	+		GFF4379	0.48	-0.3
4,380,833	+		GFF4379	0.49	-0.1
4,380,836	-		GFF4379	0.50	-0.5
4,380,863	-		GFF4379	0.55	+0.5
4,380,879	+		GFF4379	0.58	+1.0
4,380,887	+		GFF4379	0.60	-1.2
4,380,895	-		GFF4379	0.61	-2.0
4,380,896	-		GFF4379	0.62	-0.6
4,380,906	-		GFF4379	0.64	+0.5
4,380,918	-		GFF4379	0.66	+0.3
4,380,920	+		GFF4379	0.66	-0.9
4,380,920	+		GFF4379	0.66	+0.0
4,380,921	+		GFF4379	0.66	-0.8
4,380,927	-		GFF4379	0.68	-0.3
4,380,928	-		GFF4379	0.68	-0.2
4,380,929	-		GFF4379	0.68	-1.9
4,380,939	+		GFF4379	0.70	-0.4
4,380,939	+		GFF4379	0.70	-0.5
4,380,944	+		GFF4379	0.71	+0.6
4,380,949	+		GFF4379	0.72	-1.9
4,380,952	-		GFF4379	0.72	-0.9
4,380,964	-		GFF4379	0.75	-1.3
4,380,978	+		GFF4379	0.78	+0.3
4,380,991	+		GFF4379	0.80	+0.4
4,380,992	-		GFF4379	0.80	-0.3
4,381,004	+		GFF4379	0.83	-0.4
4,381,031	+		GFF4379	0.88	-0.8
4,381,039	-		GFF4379	0.89	-1.5
4,381,062	+				-0.2
4,381,075	-				+0.1
4,381,082	+				-1.6
4,381,082	+				-0.2
4,381,090	-				-1.2
4,381,090	-				+0.7
4,381,090	-				-1.5
4,381,100	-				-1.9
4,381,102	-				-0.6
4,381,102	-				-0.7
4,381,102	-				-0.3
4,381,104	-				+0.3
4,381,112	-				+1.3
4,381,112	-				-0.5
4,381,127	+				+1.3
4,381,136	-				+0.1
4,381,153	-				-0.0
4,381,169	+				-0.8
4,381,177	-				-1.2
4,381,177	-				+1.4
4,381,193	-				-0.2
4,381,203	+				+0.7
4,381,234	-		GFF4380	0.14	-2.3
4,381,249	+		GFF4380	0.17	-0.1
4,381,250	-		GFF4380	0.18	+0.4
4,381,252	-		GFF4380	0.18	-0.8
4,381,257	-		GFF4380	0.19	-1.2
4,381,257	-		GFF4380	0.19	-0.7
4,381,262	+		GFF4380	0.20	-0.1
4,381,267	+		GFF4380	0.21	-0.4
4,381,277	-		GFF4380	0.23	-1.0
4,381,294	+		GFF4380	0.26	-2.0
4,381,302	-		GFF4380	0.27	-0.6
4,381,306	+		GFF4380	0.28	-2.6
4,381,335	-		GFF4380	0.34	-0.0
4,381,340	+		GFF4380	0.35	-0.8
4,381,375	+		GFF4380	0.41	+0.3
4,381,378	-		GFF4380	0.42	-2.4
4,381,383	-		GFF4380	0.43	-0.4
4,381,384	+		GFF4380	0.43	-1.1
4,381,384	+		GFF4380	0.43	-0.2
4,381,392	-		GFF4380	0.45	-0.2
4,381,402	-		GFF4380	0.46	-3.2
4,381,427	+		GFF4380	0.51	-0.5
4,381,431	-		GFF4380	0.52	-0.4
4,381,457	+		GFF4380	0.57	-0.5
4,381,459	+		GFF4380	0.57	-1.7
4,381,466	-		GFF4380	0.59	-1.3
4,381,467	-		GFF4380	0.59	-1.2
4,381,467	-		GFF4380	0.59	-0.6
4,381,467	-		GFF4380	0.59	-0.4
4,381,468	+		GFF4380	0.59	-1.0
4,381,478	+		GFF4380	0.61	+1.1
4,381,478	+		GFF4380	0.61	-1.0
4,381,483	+		GFF4380	0.62	-1.0
4,381,486	-		GFF4380	0.62	+1.0
4,381,502	-		GFF4380	0.66	-0.5
4,381,505	+		GFF4380	0.66	-1.6
4,381,556	+		GFF4380	0.76	+0.6
4,381,594	-		GFF4380	0.83	+0.3
4,381,601	-		GFF4380	0.84	-0.7
4,381,637	+				-1.7
4,381,734	+				-1.0
4,381,734	+				-1.7
4,381,746	+				-0.8
4,381,756	-				-0.9
4,381,762	+				-1.1
4,381,762	+				-0.9
4,381,762	+				+0.3
4,381,770	-				-0.8
4,381,770	-				+1.0
4,381,770	-				-0.4
4,381,770	-				-0.6
4,381,779	+				-0.5
4,381,796	+				+0.7
4,381,801	+				-0.5
4,381,804	-				-2.1
4,381,807	+				-0.7
4,381,807	+				-0.4
4,381,812	+				-1.5
4,381,815	-				-0.3
4,381,825	-				+0.5
4,381,827	+				-1.3
4,381,835	-				+0.7
4,381,846	-				-0.8
4,381,846	-				-0.9
4,381,846	-				+0.4
4,381,846	-				+0.1
4,381,854	+				+0.7
4,381,878	+				-0.9
4,381,881	+				-0.4
4,381,906	+		GFF4381	0.11	-0.1
4,381,913	+		GFF4381	0.12	-0.8
4,381,931	-		GFF4381	0.13	-0.2
4,381,931	-		GFF4381	0.13	+0.7
4,381,933	+		GFF4381	0.13	+1.5
4,381,933	+		GFF4381	0.13	-2.2
4,381,933	+		GFF4381	0.13	-1.7
4,381,933	+		GFF4381	0.13	+0.5
4,381,933	+		GFF4381	0.13	+0.2
4,381,933	+		GFF4381	0.13	+0.5
4,381,941	-		GFF4381	0.14	-1.3
4,381,941	-		GFF4381	0.14	-0.3
4,381,941	-		GFF4381	0.14	-0.9
4,381,941	-		GFF4381	0.14	-1.0
4,381,941	-		GFF4381	0.14	-2.0
4,381,941	-		GFF4381	0.14	-2.6
4,381,941	-		GFF4381	0.14	-0.9
4,381,941	-		GFF4381	0.14	-0.7
4,381,961	+		GFF4381	0.16	+0.8
4,381,961	+		GFF4381	0.16	-0.5
4,381,961	+		GFF4381	0.16	-0.2
4,381,969	-		GFF4381	0.16	+0.2
4,381,969	-		GFF4381	0.16	+0.1
4,381,969	-		GFF4381	0.16	+0.1
4,381,969	-		GFF4381	0.16	-1.5
4,381,969	-		GFF4381	0.16	-2.4
4,381,993	+		GFF4381	0.18	-0.1
4,381,993	+		GFF4381	0.18	-1.4
4,381,993	+		GFF4381	0.18	-1.3
4,381,993	+		GFF4381	0.18	-1.3
4,381,993	+		GFF4381	0.18	+0.3
4,381,993	+		GFF4381	0.18	-0.4
4,381,993	+		GFF4381	0.18	+1.1
4,381,993	+		GFF4381	0.18	-0.4
4,382,001	-		GFF4381	0.19	+0.2
4,382,001	-		GFF4381	0.19	+0.8
4,382,001	-		GFF4381	0.19	-2.3
4,382,001	-		GFF4381	0.19	-0.5
4,382,001	-		GFF4381	0.19	-1.3
4,382,007	+		GFF4381	0.19	+0.5
4,382,015	-		GFF4381	0.20	-2.0
4,382,017	+		GFF4381	0.20	+0.6
4,382,017	+		GFF4381	0.20	+2.3
4,382,025	-		GFF4381	0.20	+1.1
4,382,040	-		GFF4381	0.22	+0.0
4,382,072	+		GFF4381	0.24	-0.2
4,382,103	+		GFF4381	0.26	-0.3
4,382,103	+		GFF4381	0.26	-1.0
4,382,124	-		GFF4381	0.28	+0.4
4,382,125	+		GFF4381	0.28	+0.3
4,382,125	+		GFF4381	0.28	-0.6
4,382,133	-		GFF4381	0.29	-0.2
4,382,135	+		GFF4381	0.29	+0.0
4,382,143	-		GFF4381	0.29	-1.6
4,382,146	-		GFF4381	0.30	+1.8
4,382,150	+		GFF4381	0.30	-1.2
4,382,151	+		GFF4381	0.30	-2.0
4,382,177	+		GFF4381	0.32	-1.1
4,382,177	+		GFF4381	0.32	-0.6
4,382,180	-		GFF4381	0.32	-0.3
4,382,185	-		GFF4381	0.33	+0.5
4,382,185	-		GFF4381	0.33	+0.8
4,382,185	-		GFF4381	0.33	-2.1
4,382,185	-		GFF4381	0.33	-0.7
4,382,185	-		GFF4381	0.33	-0.7
4,382,185	-		GFF4381	0.33	+0.2
4,382,224	+		GFF4381	0.36	+0.1
4,382,224	+		GFF4381	0.36	+0.7
4,382,225	+		GFF4381	0.36	-1.5
4,382,227	-		GFF4381	0.36	-1.7
4,382,232	-		GFF4381	0.36	-1.5
4,382,270	+		GFF4381	0.39	-0.5
4,382,270	+		GFF4381	0.39	-0.1
4,382,270	+		GFF4381	0.39	-0.7
4,382,270	+		GFF4381	0.39	-0.2
4,382,270	+		GFF4381	0.39	-0.2
4,382,270	+		GFF4381	0.39	+0.6
4,382,270	+		GFF4381	0.39	+1.1
4,382,278	-		GFF4381	0.40	+0.7
4,382,278	-		GFF4381	0.40	-0.2
4,382,278	-		GFF4381	0.40	+0.0
4,382,278	-		GFF4381	0.40	+0.3
4,382,278	-		GFF4381	0.40	+0.4
4,382,302	-		GFF4381	0.42	+0.8
4,382,303	+		GFF4381	0.42	+0.4
4,382,304	+		GFF4381	0.42	+0.6
4,382,304	+		GFF4381	0.42	-0.5
4,382,311	-		GFF4381	0.42	-0.4
4,382,312	-		GFF4381	0.42	-1.0
4,382,345	-		GFF4381	0.45	-0.1
4,382,351	+		GFF4381	0.45	-1.1
4,382,355	-		GFF4381	0.46	-1.3
4,382,360	+		GFF4381	0.46	-0.1
4,382,370	+		GFF4381	0.47	-0.0
4,382,370	+		GFF4381	0.47	-0.5
4,382,389	+		GFF4381	0.48	-0.2
4,382,397	+		GFF4381	0.49	+0.1
4,382,397	+		GFF4381	0.49	-0.3
4,382,397	+		GFF4381	0.49	-0.3
4,382,397	+		GFF4381	0.49	-0.8
4,382,397	+		GFF4381	0.49	+0.6
4,382,405	-		GFF4381	0.49	-0.4
4,382,405	-		GFF4381	0.49	-1.2
4,382,405	-		GFF4381	0.49	+0.3
4,382,405	-		GFF4381	0.49	-0.2
4,382,405	-		GFF4381	0.49	-0.2
4,382,405	-		GFF4381	0.49	+0.7
4,382,405	-		GFF4381	0.49	-0.5
4,382,405	-		GFF4381	0.49	-0.1
4,382,405	-		GFF4381	0.49	-0.5
4,382,405	-		GFF4381	0.49	+0.5
4,382,413	+		GFF4381	0.50	+0.6
4,382,413	+		GFF4381	0.50	-1.0
4,382,415	+		GFF4381	0.50	-0.3
4,382,416	+		GFF4381	0.50	-1.0
4,382,416	-		GFF4381	0.50	+1.2
4,382,417	+		GFF4381	0.50	-0.0
4,382,421	-		GFF4381	0.51	-0.9
4,382,484	+		GFF4381	0.56	+0.4
4,382,489	+		GFF4381	0.56	+1.0
4,382,529	+		GFF4381	0.59	-2.1
4,382,529	+		GFF4381	0.59	+0.0
4,382,529	+		GFF4381	0.59	+1.3
4,382,529	+		GFF4381	0.59	-1.0
4,382,529	+		GFF4381	0.59	+0.6
4,382,529	+		GFF4381	0.59	+0.1
4,382,529	+		GFF4381	0.59	-2.0
4,382,529	+		GFF4381	0.59	+1.3
4,382,529	+		GFF4381	0.59	-0.0
4,382,529	+		GFF4381	0.59	-0.7
4,382,529	+		GFF4381	0.59	-1.0
4,382,529	+		GFF4381	0.59	-0.9
4,382,536	+		GFF4381	0.59	-2.4
4,382,536	+		GFF4381	0.59	-1.1
4,382,536	+		GFF4381	0.59	+1.1
4,382,536	+		GFF4381	0.59	-1.1
4,382,536	+		GFF4381	0.59	-0.6
4,382,536	+		GFF4381	0.59	-2.7
4,382,536	+		GFF4381	0.59	+0.2
4,382,536	+		GFF4381	0.59	+0.7
4,382,536	+		GFF4381	0.59	-1.4
4,382,537	-		GFF4381	0.60	+0.2
4,382,537	-		GFF4381	0.60	-0.0
4,382,537	-		GFF4381	0.60	-0.9
4,382,537	-		GFF4381	0.60	-0.5
4,382,537	-		GFF4381	0.60	+1.4
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4,382,537	-		GFF4381	0.60	-0.7
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4,382,537	-		GFF4381	0.60	-1.7
4,382,537	-		GFF4381	0.60	+0.2
4,382,537	-		GFF4381	0.60	-0.1
4,382,537	-		GFF4381	0.60	-0.9
4,382,544	-		GFF4381	0.60	-0.0
4,382,544	-		GFF4381	0.60	-2.2
4,382,544	-		GFF4381	0.60	+0.0
4,382,544	-		GFF4381	0.60	-1.5
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4,382,544	-		GFF4381	0.60	+0.5
4,382,544	-		GFF4381	0.60	+1.1
4,382,544	-		GFF4381	0.60	-0.9
4,382,544	-		GFF4381	0.60	+0.3
4,382,546	+		GFF4381	0.60	-0.9
4,382,556	-		GFF4381	0.61	-0.3
4,382,562	+		GFF4381	0.61	+0.8
4,382,562	+		GFF4381	0.61	-1.5
4,382,562	+		GFF4381	0.61	+0.9
4,382,562	+		GFF4381	0.61	+0.2
4,382,570	-		GFF4381	0.62	+0.2
4,382,570	-		GFF4381	0.62	-0.5
4,382,570	-		GFF4381	0.62	+0.4
4,382,587	+		GFF4381	0.63	-0.5
4,382,587	+		GFF4381	0.63	-0.8
4,382,587	+		GFF4381	0.63	+0.0
4,382,595	-		GFF4381	0.64	-0.7
4,382,597	+		GFF4381	0.64	+0.5
4,382,600	-		GFF4381	0.64	+0.5
4,382,605	-		GFF4381	0.65	+1.2
4,382,607	+		GFF4381	0.65	+0.6
4,382,607	+		GFF4381	0.65	-2.2
4,382,610	-		GFF4381	0.65	+0.4
4,382,617	+		GFF4381	0.66	+1.5
4,382,620	-		GFF4381	0.66	+0.1
4,382,620	-		GFF4381	0.66	+0.1
4,382,625	-		GFF4381	0.66	+0.1
4,382,625	-		GFF4381	0.66	+0.8
4,382,657	+		GFF4381	0.69	+0.2
4,382,657	+		GFF4381	0.69	-0.8
4,382,657	+		GFF4381	0.69	+0.1
4,382,670	-		GFF4381	0.70	-1.0
4,382,672	-		GFF4381	0.70	+0.5
4,382,681	+		GFF4381	0.71	-0.3