Strain Fitness in Sphingobium sp. HT1-2 around GFF4369

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,366,496	-				-2.0
4,366,513	+				+0.6
4,366,523	+				-0.4
4,366,523	+				-0.1
4,366,525	+				-0.1
4,366,531	-				+0.3
4,366,531	-				-0.5
4,366,533	-				+0.2
4,366,559	-		GFF4367	0.12	-1.0
4,366,561	+		GFF4367	0.12	-1.5
4,366,564	-		GFF4367	0.13	-0.8
4,366,566	+		GFF4367	0.13	+0.3
4,366,566	+		GFF4367	0.13	+0.7
4,366,566	+		GFF4367	0.13	+0.7
4,366,569	-		GFF4367	0.14	-0.0
4,366,573	+		GFF4367	0.14	-0.7
4,366,574	-		GFF4367	0.14	-0.2
4,366,574	-		GFF4367	0.14	-0.1
4,366,574	-		GFF4367	0.14	+0.2
4,366,581	+		GFF4367	0.15	-1.6
4,366,581	+		GFF4367	0.15	-0.1
4,366,581	+		GFF4367	0.15	+0.9
4,366,581	+		GFF4367	0.15	-2.4
4,366,581	+		GFF4367	0.15	-1.7
4,366,581	+		GFF4367	0.15	-0.0
4,366,581	+		GFF4367	0.15	+0.3
4,366,581	+		GFF4367	0.15	-0.0
4,366,589	-		GFF4367	0.17	-0.6
4,366,589	-		GFF4367	0.17	+0.4
4,366,589	-		GFF4367	0.17	+0.0
4,366,589	-		GFF4367	0.17	-0.1
4,366,589	-		GFF4367	0.17	-2.8
4,366,606	+		GFF4367	0.19	-0.3
4,366,612	+		GFF4367	0.20	-0.1
4,366,614	-		GFF4367	0.20	-0.5
4,366,614	-		GFF4367	0.20	+1.0
4,366,620	-		GFF4367	0.21	+1.1
4,366,630	+		GFF4367	0.23	+0.6
4,366,661	-		GFF4367	0.27	+0.1
4,366,682	+		GFF4367	0.31	-0.7
4,366,740	+		GFF4367	0.39	+1.1
4,366,755	+		GFF4367	0.42	+0.2
4,366,755	-		GFF4367	0.42	-0.0
4,366,757	+		GFF4367	0.42	-1.4
4,366,760	-		GFF4367	0.42	-0.9
4,366,802	-		GFF4367	0.49	-0.5
4,366,807	-		GFF4367	0.49	-0.5
4,366,899	+		GFF4367	0.63	+0.3
4,366,907	-		GFF4367	0.65	-0.2
4,366,907	-		GFF4367	0.65	-1.0
4,366,910	+		GFF4367	0.65	-0.0
4,366,910	+		GFF4367	0.65	-2.0
4,366,918	-		GFF4367	0.66	-0.3
4,366,918	-		GFF4367	0.66	+0.2
4,366,918	-		GFF4367	0.66	-1.2
4,366,918	-		GFF4367	0.66	-0.8
4,366,924	+		GFF4367	0.67	+0.1
4,366,924	+		GFF4367	0.67	+0.2
4,366,968	+		GFF4367	0.74	+1.1
4,366,969	+		GFF4367	0.74	-1.8
4,366,969	+		GFF4367	0.74	-0.4
4,366,969	+		GFF4367	0.74	-0.8
4,366,969	+		GFF4367	0.74	+0.4
4,366,977	-		GFF4367	0.75	+1.4
4,366,984	+		GFF4367	0.76	+0.1
4,366,984	+		GFF4367	0.76	+0.0
4,366,986	+		GFF4367	0.76	-2.0
4,367,007	+		GFF4367	0.80	+0.9
4,367,011	+		GFF4367	0.80	+0.0
4,367,011	+		GFF4367	0.80	+0.7
4,367,032	+		GFF4367	0.83	-0.7
4,367,047	-		GFF4367	0.86	-1.1
4,367,049	+		GFF4367	0.86	+0.0
4,367,049	+		GFF4367	0.86	+0.0
4,367,055	+		GFF4367	0.87	-0.0
4,367,055	+		GFF4367	0.87	+0.8
4,367,057	-		GFF4367	0.87	-0.2
4,367,063	-		GFF4367	0.88	-1.6
4,367,063	-		GFF4367	0.88	+2.0
4,367,063	-		GFF4367	0.88	-0.9
4,367,068	-		GFF4367	0.89	-2.0
4,367,076	+				+0.3
4,367,079	+				-2.0
4,367,082	-				-1.8
4,367,084	-				-0.2
4,367,089	+				-0.3
4,367,089	-				-1.0
4,367,094	+				-1.1
4,367,117	-				+0.4
4,367,123	+				+1.5
4,367,123	+				+0.1
4,367,126	-				-1.0
4,367,205	+		GFF4368	0.23	-0.3
4,367,213	-		GFF4368	0.26	-0.7
4,367,240	+		GFF4368	0.35	-0.4
4,367,245	-		GFF4368	0.36	-1.5
4,367,262	+		GFF4368	0.42	+0.5
4,367,262	+		GFF4368	0.42	-0.5
4,367,262	+		GFF4368	0.42	-0.3
4,367,262	+		GFF4368	0.42	+0.6
4,367,262	+		GFF4368	0.42	-1.8
4,367,262	+		GFF4368	0.42	-1.4
4,367,262	+		GFF4368	0.42	-0.1
4,367,262	+		GFF4368	0.42	-1.1
4,367,262	+		GFF4368	0.42	-0.4
4,367,262	+		GFF4368	0.42	+0.8
4,367,270	-		GFF4368	0.45	-0.1
4,367,270	-		GFF4368	0.45	+0.3
4,367,270	-		GFF4368	0.45	+1.0
4,367,270	-		GFF4368	0.45	+0.4
4,367,270	-		GFF4368	0.45	-0.0
4,367,270	-		GFF4368	0.45	+0.3
4,367,270	-		GFF4368	0.45	-0.4
4,367,270	-		GFF4368	0.45	+0.3
4,367,270	-		GFF4368	0.45	+0.7
4,367,270	-		GFF4368	0.45	-0.0
4,367,270	-		GFF4368	0.45	+1.0
4,367,270	-		GFF4368	0.45	+0.6
4,367,270	-		GFF4368	0.45	+0.8
4,367,270	-		GFF4368	0.45	+0.0
4,367,270	-		GFF4368	0.45	+1.0
4,367,270	-		GFF4368	0.45	+0.3
4,367,271	-		GFF4368	0.45	+0.6
4,367,272	+		GFF4368	0.46	-0.0
4,367,272	+		GFF4368	0.46	+1.0
4,367,280	-		GFF4368	0.48	-0.4
4,367,280	-		GFF4368	0.48	-0.6
4,367,287	+		GFF4368	0.51	-0.2
4,367,287	-		GFF4368	0.51	-0.1
4,367,301	+		GFF4368	0.55	+0.2
4,367,304	+		GFF4368	0.56	+0.9
4,367,306	+		GFF4368	0.57	+0.2
4,367,306	+		GFF4368	0.57	-0.5
4,367,306	+		GFF4368	0.57	+0.4
4,367,306	+		GFF4368	0.57	-2.0
4,367,306	+		GFF4368	0.57	-1.3
4,367,309	-		GFF4368	0.58	+0.5
4,367,316	+		GFF4368	0.61	-0.5
4,367,317	+		GFF4368	0.61	-0.4
4,367,317	+		GFF4368	0.61	+0.9
4,367,322	+		GFF4368	0.63	+0.5
4,367,324	+		GFF4368	0.63	-0.6
4,367,324	+		GFF4368	0.63	-0.7
4,367,332	-		GFF4368	0.66	-0.8
4,367,360	+		GFF4368	0.76	+0.5
4,367,365	+		GFF4368	0.77	-1.0
4,367,368	-		GFF4368	0.78	-1.5
4,367,368	-		GFF4368	0.78	+1.6
4,367,368	-		GFF4368	0.78	-0.6
4,367,373	+		GFF4368	0.80	+0.2
4,367,373	+		GFF4368	0.80	-1.6
4,367,385	-		GFF4368	0.84	+0.5
4,367,386	-		GFF4368	0.84	+0.8
4,367,392	+		GFF4368	0.86	-0.1
4,367,392	+		GFF4368	0.86	+1.6
4,367,392	+		GFF4368	0.86	+0.0
4,367,400	-		GFF4368	0.89	-1.6
4,367,400	-		GFF4368	0.89	+0.5
4,367,400	-		GFF4368	0.89	-0.1
4,367,404	-				+0.6
4,367,409	-				-0.5
4,367,413	+				+1.2
4,367,413	+				+0.2
4,367,413	+				-1.3
4,367,413	+				+0.1
4,367,413	+				-0.5
4,367,421	-				-0.1
4,367,421	-				+0.0
4,367,448	+				+0.5
4,367,451	-				-2.0
4,367,456	+				+0.0
4,367,456	-				+0.1
4,367,458	-				-1.8
4,367,459	-				+0.6
4,367,474	-				+0.3
4,367,475	+				+0.9
4,367,475	+				-1.6
4,367,481	+				-0.8
4,367,489	-				-1.8
4,367,497	+				-0.2
4,367,499	+				+1.0
4,367,505	-				+0.5
4,367,506	-				-0.5
4,367,506	-				+0.7
4,367,506	-				-0.5
4,367,506	-				+0.5
4,367,508	+				+1.4
4,367,508	+				-0.4
4,367,508	+				-0.6
4,367,508	+				-0.1
4,367,508	+				+0.8
4,367,508	+				-1.5
4,367,508	+				+0.2
4,367,508	+				+1.0
4,367,516	-				-0.6
4,367,516	-				-0.1
4,367,516	-				-0.5
4,367,516	-				-0.0
4,367,516	-				-1.7
4,367,516	-				-0.4
4,367,538	-				+0.1
4,367,544	-				-1.4
4,367,544	-				-0.6
4,367,547	+				+0.6
4,367,548	-				-1.1
4,367,550	+				+0.3
4,367,556	+				+0.2
4,367,558	+				+0.0
4,367,566	-				-1.1
4,367,624	+		GFF4369	0.17	+0.6
4,367,630	-		GFF4369	0.17	-0.6
4,367,630	-		GFF4369	0.17	+0.2
4,367,630	-		GFF4369	0.17	-1.7
4,367,630	-		GFF4369	0.17	-1.1
4,367,655	-		GFF4369	0.20	-0.0
4,367,657	-		GFF4369	0.21	-0.5
4,367,676	-		GFF4369	0.23	+0.6
4,367,676	-		GFF4369	0.23	-1.0
4,367,687	+		GFF4369	0.24	-0.8
4,367,722	+		GFF4369	0.28	-0.2
4,367,730	-		GFF4369	0.29	+0.4
4,367,730	-		GFF4369	0.29	+0.0
4,367,768	+		GFF4369	0.34	+0.2
4,367,776	-		GFF4369	0.35	-0.1
4,367,781	-		GFF4369	0.35	-1.5
4,367,792	-		GFF4369	0.37	-0.3
4,367,797	-		GFF4369	0.37	-1.5
4,367,799	+		GFF4369	0.38	-2.4
4,367,809	+		GFF4369	0.39	+0.9
4,367,816	-		GFF4369	0.40	-0.9
4,367,817	-		GFF4369	0.40	-0.5
4,367,836	+		GFF4369	0.42	+1.1
4,367,838	+		GFF4369	0.42	-1.3
4,367,866	+		GFF4369	0.45	+0.6
4,367,874	-		GFF4369	0.46	-0.0
4,367,875	+		GFF4369	0.47	-0.6
4,367,875	+		GFF4369	0.47	-0.8
4,367,883	+		GFF4369	0.47	-0.7
4,367,883	-		GFF4369	0.47	-1.6
4,367,891	-		GFF4369	0.48	+1.0
4,367,898	+		GFF4369	0.49	-2.4
4,367,906	-		GFF4369	0.50	-1.8
4,367,906	-		GFF4369	0.50	+1.0
4,367,917	-		GFF4369	0.52	-2.3
4,367,929	+		GFF4369	0.53	-0.6
4,367,929	+		GFF4369	0.53	+0.1
4,367,937	-		GFF4369	0.54	-1.3
4,367,937	-		GFF4369	0.54	-0.3
4,367,966	+		GFF4369	0.57	-1.1
4,367,981	-		GFF4369	0.59	+0.4
4,367,983	+		GFF4369	0.59	-0.6
4,367,983	+		GFF4369	0.59	+0.3
4,367,991	-		GFF4369	0.60	-0.5
4,367,991	-		GFF4369	0.60	-0.3
4,367,991	-		GFF4369	0.60	-0.7
4,367,992	+		GFF4369	0.60	-1.6
4,367,992	+		GFF4369	0.60	+1.0
4,367,992	+		GFF4369	0.60	-1.6
4,367,995	-		GFF4369	0.61	+0.4
4,368,000	-		GFF4369	0.61	-2.1
4,368,021	+		GFF4369	0.64	-1.9
4,368,025	+		GFF4369	0.64	+0.4
4,368,025	+		GFF4369	0.64	-0.7
4,368,031	-		GFF4369	0.65	+0.5
4,368,033	-		GFF4369	0.65	-1.8
4,368,033	-		GFF4369	0.65	+0.3
4,368,039	-		GFF4369	0.66	-1.6
4,368,049	+		GFF4369	0.67	+0.3
4,368,049	+		GFF4369	0.67	+0.1
4,368,049	+		GFF4369	0.67	-1.5
4,368,049	+		GFF4369	0.67	-0.6
4,368,050	-		GFF4369	0.67	-1.5
4,368,057	-		GFF4369	0.68	+0.0
4,368,060	+		GFF4369	0.69	-0.4
4,368,060	+		GFF4369	0.69	+0.2
4,368,074	-		GFF4369	0.70	-0.9
4,368,074	-		GFF4369	0.70	-0.2
4,368,074	-		GFF4369	0.70	+0.3
4,368,074	-		GFF4369	0.70	-0.0
4,368,076	+		GFF4369	0.70	+0.1
4,368,076	-		GFF4369	0.70	+0.7
4,368,085	+		GFF4369	0.72	-1.0
4,368,093	-		GFF4369	0.72	+0.3
4,368,095	+		GFF4369	0.73	-1.4
4,368,103	+		GFF4369	0.74	-0.4
4,368,103	+		GFF4369	0.74	+1.1
4,368,103	-		GFF4369	0.74	-1.0
4,368,105	+		GFF4369	0.74	-1.7
4,368,110	+		GFF4369	0.75	-0.5
4,368,113	-		GFF4369	0.75	+0.7
4,368,122	+		GFF4369	0.76	-1.9
4,368,122	+		GFF4369	0.76	-1.5
4,368,122	+		GFF4369	0.76	+0.1
4,368,122	+		GFF4369	0.76	+1.2
4,368,123	-		GFF4369	0.76	-0.0
4,368,147	+		GFF4369	0.79	+0.0
4,368,147	+		GFF4369	0.79	-0.8
4,368,147	+		GFF4369	0.79	+0.0
4,368,155	+		GFF4369	0.80	+0.2
4,368,155	-		GFF4369	0.80	+0.4
4,368,155	-		GFF4369	0.80	-0.1
4,368,155	-		GFF4369	0.80	+0.4
4,368,163	+		GFF4369	0.81	+0.2
4,368,171	+		GFF4369	0.82	+1.1
4,368,171	+		GFF4369	0.82	-1.3
4,368,171	-		GFF4369	0.82	-0.5
4,368,176	+		GFF4369	0.82	-0.8
4,368,184	-		GFF4369	0.83	+0.3
4,368,233	-		GFF4369	0.89	-0.6
4,368,233	-		GFF4369	0.89	-1.0
4,368,233	-		GFF4369	0.89	-0.4
4,368,241	+				+0.3
4,368,250	+				-1.0
4,368,250	+				-0.3
4,368,258	-				-0.5
4,368,266	+				-0.5
4,368,266	+				+0.3
4,368,295	+				+0.0
4,368,295	+				-0.8
4,368,305	+				+0.2
4,368,305	+				-0.6
4,368,311	-				-0.1
4,368,318	+				-0.6
4,368,326	-				-0.9
4,368,332	+				+0.2
4,368,358	+				+0.9
4,368,360	+				-0.0
4,368,360	+				+0.2
4,368,360	+				-0.1
4,368,360	+				-0.7
4,368,360	+				-1.5
4,368,360	+				+0.7
4,368,360	+				-1.8
4,368,360	+				-0.1
4,368,360	+				+1.0
4,368,366	+				-1.5
4,368,366	+				-0.1
4,368,366	+				-0.6
4,368,366	+				-1.5
4,368,367	-				+1.0
4,368,368	-				-2.2
4,368,368	-				+0.8
4,368,368	-				-0.4
4,368,368	-				-0.1
4,368,368	-				+0.3
4,368,368	-				+0.3
4,368,368	-				+1.3
4,368,368	-				+0.3
4,368,368	-				-0.6
4,368,368	-				+0.5
4,368,374	-				+1.6
4,368,374	-				+1.0
4,368,374	-				+0.8
4,368,374	-				+0.8
4,368,377	+				-0.5
4,368,382	+				+0.3
4,368,390	-				-1.8
4,368,390	-				-1.9
4,368,392	+				+0.9
4,368,402	+				-0.9
4,368,402	+				-0.8
4,368,402	+				-0.6
4,368,402	+				-0.5
4,368,410	-				-1.0
4,368,410	-				+0.9
4,368,410	-				+1.5
4,368,432	+				-1.3
4,368,443	-				-0.6
4,368,475	-				-1.1
4,368,481	+				+0.3
4,368,488	+				-0.8
4,368,488	+				-0.7
4,368,488	+				+1.0
4,368,488	+				+0.5
4,368,494	-				-1.1
4,368,496	-				+0.7
4,368,496	-				+0.3
4,368,496	-				-0.5
4,368,503	+				-0.8
4,368,511	+				-0.5
4,368,511	+				-0.9
4,368,511	+				-1.1
4,368,512	-				+0.6
4,368,519	-				-1.5
4,368,519	-				-1.7
4,368,519	-				+0.3
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