Strain Fitness in Sphingobium sp. HT1-2 around GFF4298

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,303,567	-		GFF4295	0.67	+0.0
4,303,589	-		GFF4295	0.71	-1.4
4,303,612	+		GFF4295	0.74	-1.4
4,303,612	+		GFF4295	0.74	-0.1
4,303,613	+		GFF4295	0.75	-0.9
4,303,656	-		GFF4295	0.81	+0.9
4,303,668	+		GFF4295	0.83	+0.3
4,303,674	+		GFF4295	0.84	-0.1
4,303,682	-		GFF4295	0.86	-0.6
4,303,693	-		GFF4295	0.87	+0.6
4,303,693	-		GFF4295	0.87	+0.6
4,303,749	+				-1.3
4,303,749	+				+1.0
4,303,749	+				-0.6
4,303,749	+				-2.4
4,303,757	-				-0.3
4,303,757	-				-0.8
4,303,757	-				+0.1
4,303,757	-				-0.1
4,303,762	+				-0.6
4,303,768	+				-0.2
4,303,782	+				+0.2
4,303,787	+				-1.4
4,303,795	-				-0.6
4,303,812	+				-0.3
4,303,820	+				+0.6
4,303,822	+				-1.2
4,303,822	+				+0.8
4,303,830	-				+0.9
4,303,830	-				-0.7
4,303,848	-				+0.2
4,303,858	+				-0.2
4,303,865	-				-1.3
4,303,881	+		GFF4296	0.12	-0.6
4,303,891	+		GFF4296	0.14	-1.8
4,303,896	+		GFF4296	0.16	-0.2
4,303,904	-		GFF4296	0.18	-0.9
4,303,912	+		GFF4296	0.20	+0.2
4,303,920	-		GFF4296	0.22	-0.6
4,303,920	-		GFF4296	0.22	+0.6
4,303,920	-		GFF4296	0.22	-1.2
4,303,920	-		GFF4296	0.22	+0.2
4,303,925	+		GFF4296	0.24	-0.7
4,303,925	+		GFF4296	0.24	+0.4
4,303,925	-		GFF4296	0.24	+0.9
4,303,925	-		GFF4296	0.24	+0.0
4,303,926	+		GFF4296	0.24	+0.5
4,303,933	-		GFF4296	0.26	+0.1
4,303,933	-		GFF4296	0.26	+0.2
4,303,937	+		GFF4296	0.27	+0.6
4,303,944	-		GFF4296	0.29	-0.5
4,303,944	-		GFF4296	0.29	+0.9
4,303,945	+		GFF4296	0.29	-0.2
4,303,953	+		GFF4296	0.31	+0.5
4,303,958	+		GFF4296	0.33	-0.0
4,303,963	+		GFF4296	0.34	-0.7
4,303,963	+		GFF4296	0.34	-0.3
4,303,966	-		GFF4296	0.35	-0.2
4,303,972	+		GFF4296	0.37	+0.0
4,303,980	-		GFF4296	0.39	-0.7
4,303,990	-		GFF4296	0.42	-0.5
4,304,022	-		GFF4296	0.50	+0.6
4,304,045	+		GFF4296	0.57	-0.7
4,304,050	+		GFF4296	0.58	+0.2
4,304,052	-		GFF4296	0.59	-0.3
4,304,055	+		GFF4296	0.60	+0.4
4,304,080	+		GFF4296	0.66	-0.8
4,304,086	+		GFF4296	0.68	-1.1
4,304,086	+		GFF4296	0.68	+0.2
4,304,094	-		GFF4296	0.70	+0.1
4,304,094	-		GFF4296	0.70	-0.5
4,304,094	-		GFF4296	0.70	-0.3
4,304,094	-		GFF4296	0.70	+0.4
4,304,094	-		GFF4296	0.70	-0.0
4,304,108	+		GFF4296	0.74	-1.8
4,304,108	+		GFF4296	0.74	-0.8
4,304,108	+		GFF4296	0.74	+0.0
4,304,108	+		GFF4296	0.74	+0.2
4,304,108	+		GFF4296	0.74	+0.8
4,304,108	+		GFF4296	0.74	-0.2
4,304,108	+		GFF4296	0.74	+0.8
4,304,108	+		GFF4296	0.74	+0.2
4,304,108	+		GFF4296	0.74	-0.1
4,304,116	-		GFF4296	0.76	-3.1
4,304,116	-		GFF4296	0.76	+0.2
4,304,116	-		GFF4296	0.76	+0.9
4,304,116	-		GFF4296	0.76	-0.8
4,304,116	-		GFF4296	0.76	+0.5
4,304,119	+		GFF4296	0.77	-1.7
4,304,137	+		GFF4296	0.82	-0.7
4,304,137	+		GFF4296	0.82	-0.4
4,304,144	-		GFF4296	0.84	-3.1
4,304,147	+		GFF4296	0.85	+0.3
4,304,149	+		GFF4296	0.85	-0.8
4,304,159	-		GFF4296	0.88	+0.9
4,304,177	+				+0.4
4,304,177	+				-0.8
4,304,182	+				-0.3
4,304,187	+				-1.4
4,304,188	+				+0.6
4,304,188	+				+0.3
4,304,188	+				-1.3
4,304,188	+				-0.8
4,304,188	+				-0.0
4,304,188	+				-1.8
4,304,188	+				-0.5
4,304,188	+				-0.6
4,304,188	+				+0.2
4,304,188	+				-2.0
4,304,188	+				+0.1
4,304,188	+				-0.8
4,304,196	-				-0.1
4,304,196	-				+0.2
4,304,196	-				-0.9
4,304,196	-				-0.1
4,304,196	-				+1.6
4,304,196	-				+0.2
4,304,196	-				+1.1
4,304,196	-				-2.7
4,304,196	-				-0.4
4,304,196	-				+0.2
4,304,198	+				+0.6
4,304,218	+				-0.2
4,304,259	+				-0.2
4,304,261	+				-0.2
4,304,269	-				+1.2
4,304,269	-				-2.2
4,304,294	+				+1.2
4,304,303	+				-0.6
4,304,303	+				-1.4
4,304,303	+				-0.6
4,304,316	+				-0.6
4,304,323	+				-0.9
4,304,329	-				-0.9
4,304,329	-				+0.8
4,304,330	-				-2.0
4,304,337	-				-0.7
4,304,337	-				-1.5
4,304,337	-				+0.0
4,304,352	+		GFF4297	0.12	+1.5
4,304,363	+		GFF4297	0.16	-1.9
4,304,371	-		GFF4297	0.19	-0.4
4,304,378	+		GFF4297	0.22	+0.4
4,304,395	-		GFF4297	0.28	-0.2
4,304,419	+		GFF4297	0.38	-1.2
4,304,430	-		GFF4297	0.42	-0.4
4,304,442	+		GFF4297	0.46	-0.1
4,304,442	+		GFF4297	0.46	-0.4
4,304,442	+		GFF4297	0.46	-0.0
4,304,450	-		GFF4297	0.49	-0.4
4,304,450	-		GFF4297	0.49	-2.1
4,304,450	-		GFF4297	0.49	-1.4
4,304,450	-		GFF4297	0.49	-1.4
4,304,450	-		GFF4297	0.49	-1.6
4,304,464	+		GFF4297	0.55	+1.2
4,304,477	+		GFF4297	0.60	-2.1
4,304,483	-		GFF4297	0.62	-1.7
4,304,574	-				-0.5
4,304,575	+				-3.5
4,304,583	-				+0.3
4,304,590	-				+0.1
4,304,596	+				-1.7
4,304,616	+				-0.7
4,304,644	-				+1.3
4,304,654	+				-0.4
4,304,662	-				+1.6
4,304,670	-				-0.4
4,304,671	+				+1.0
4,304,673	+				-0.4
4,304,673	+				-1.1
4,304,678	+				-2.4
4,304,680	+				+0.4
4,304,680	+				+1.2
4,304,680	+				-0.2
4,304,680	+				-1.1
4,304,680	+				+0.8
4,304,680	+				-1.7
4,304,680	+				-0.0
4,304,680	+				+0.8
4,304,688	-				-0.4
4,304,688	-				-2.1
4,304,688	-				+0.2
4,304,688	-				+0.4
4,304,688	-				-0.8
4,304,688	-				-1.4
4,304,688	-				-0.5
4,304,688	-				-1.1
4,304,690	+				-0.2
4,304,690	+				+0.9
4,304,707	+				-0.4
4,304,748	+				-0.1
4,304,755	+				-1.2
4,304,765	+				-0.8
4,304,776	+				+0.0
4,304,784	-				+0.7
4,304,784	-				-0.3
4,304,791	+				+0.9
4,304,808	+				-0.5
4,304,859	-				+0.3
4,304,868	+				-1.9
4,304,876	-				+0.5
4,304,878	+				-0.4
4,304,887	+				+0.1
4,304,887	+				+1.7
4,304,887	+				-0.1
4,304,887	+				-0.2
4,304,887	+				+0.3
4,304,887	+				+0.0
4,304,895	-		GFF4298	0.10	-0.5
4,304,895	-		GFF4298	0.10	+0.9
4,304,909	+		GFF4298	0.11	-0.3
4,304,909	+		GFF4298	0.11	-1.8
4,304,915	+		GFF4298	0.11	-0.7
4,304,917	-		GFF4298	0.11	-0.2
4,304,917	-		GFF4298	0.11	-2.0
4,304,917	-		GFF4298	0.11	-1.1
4,304,919	+		GFF4298	0.11	+0.6
4,304,922	+		GFF4298	0.11	-1.2
4,304,927	+		GFF4298	0.11	-0.4
4,304,947	+		GFF4298	0.12	-0.4
4,304,957	+		GFF4298	0.12	+0.5
4,304,957	+		GFF4298	0.12	-2.2
4,304,957	-		GFF4298	0.12	-2.0
4,304,965	-		GFF4298	0.12	-0.3
4,304,965	-		GFF4298	0.12	-0.6
4,304,965	-		GFF4298	0.12	+0.7
4,304,965	-		GFF4298	0.12	-1.6
4,304,965	-		GFF4298	0.12	-0.6
4,304,965	-		GFF4298	0.12	-1.0
4,304,965	-		GFF4298	0.12	+0.6
4,305,000	+		GFF4298	0.13	-0.6
4,305,000	+		GFF4298	0.13	-1.9
4,305,000	+		GFF4298	0.13	+0.9
4,305,000	+		GFF4298	0.13	-0.6
4,305,008	-		GFF4298	0.14	-0.6
4,305,008	-		GFF4298	0.14	-0.4
4,305,008	-		GFF4298	0.14	+0.1
4,305,011	+		GFF4298	0.14	-0.8
4,305,029	-		GFF4298	0.14	-1.6
4,305,042	+		GFF4298	0.15	-0.2
4,305,042	+		GFF4298	0.15	+0.1
4,305,049	+		GFF4298	0.15	+0.2
4,305,050	-		GFF4298	0.15	+0.2
4,305,054	+		GFF4298	0.15	+1.2
4,305,054	+		GFF4298	0.15	+1.1
4,305,054	+		GFF4298	0.15	+1.0
4,305,054	+		GFF4298	0.15	-1.1
4,305,054	+		GFF4298	0.15	+0.6
4,305,059	+		GFF4298	0.15	+0.3
4,305,059	+		GFF4298	0.15	-2.3
4,305,060	-		GFF4298	0.15	+0.6
4,305,062	-		GFF4298	0.15	-0.3
4,305,062	-		GFF4298	0.15	+0.5
4,305,062	-		GFF4298	0.15	+1.3
4,305,064	+		GFF4298	0.15	+0.0
4,305,069	+		GFF4298	0.15	+0.6
4,305,089	+		GFF4298	0.16	-0.3
4,305,095	-		GFF4298	0.16	+0.0
4,305,095	-		GFF4298	0.16	+0.0
4,305,110	+		GFF4298	0.17	+0.3
4,305,115	+		GFF4298	0.17	-0.4
4,305,123	-		GFF4298	0.17	+0.0
4,305,158	+		GFF4298	0.18	-0.9
4,305,158	+		GFF4298	0.18	-0.2
4,305,158	+		GFF4298	0.18	+0.4
4,305,164	+		GFF4298	0.18	+0.2
4,305,168	+		GFF4298	0.18	-0.4
4,305,169	+		GFF4298	0.19	+1.3
4,305,194	-		GFF4298	0.19	+0.2
4,305,198	+		GFF4298	0.19	-2.5
4,305,204	+		GFF4298	0.20	-0.7
4,305,215	+		GFF4298	0.20	+0.0
4,305,215	+		GFF4298	0.20	-1.1
4,305,215	+		GFF4298	0.20	-1.6
4,305,223	-		GFF4298	0.20	-0.0
4,305,223	-		GFF4298	0.20	-1.7
4,305,223	-		GFF4298	0.20	+0.6
4,305,223	-		GFF4298	0.20	+0.6
4,305,223	-		GFF4298	0.20	-1.7
4,305,234	-		GFF4298	0.20	+0.8
4,305,238	-		GFF4298	0.21	+0.3
4,305,240	+		GFF4298	0.21	+1.0
4,305,240	+		GFF4298	0.21	+0.9
4,305,246	+		GFF4298	0.21	+0.8
4,305,248	+		GFF4298	0.21	-0.6
4,305,248	+		GFF4298	0.21	-0.1
4,305,248	+		GFF4298	0.21	-1.7
4,305,248	+		GFF4298	0.21	-1.4
4,305,248	+		GFF4298	0.21	-0.0
4,305,248	-		GFF4298	0.21	+0.1
4,305,256	-		GFF4298	0.21	+0.4
4,305,256	-		GFF4298	0.21	-0.4
4,305,256	-		GFF4298	0.21	-1.7
4,305,256	-		GFF4298	0.21	+0.2
4,305,256	-		GFF4298	0.21	+0.6
4,305,256	-		GFF4298	0.21	+0.1
4,305,269	+		GFF4298	0.22	+0.6
4,305,269	+		GFF4298	0.22	-0.1
4,305,277	+		GFF4298	0.22	-1.4
4,305,284	+		GFF4298	0.22	-1.8
4,305,286	+		GFF4298	0.22	-0.1
4,305,289	+		GFF4298	0.22	-0.1
4,305,294	+		GFF4298	0.22	+0.6
4,305,294	+		GFF4298	0.22	-0.7
4,305,294	+		GFF4298	0.22	-1.2
4,305,294	+		GFF4298	0.22	+0.7
4,305,294	+		GFF4298	0.22	-0.9
4,305,294	+		GFF4298	0.22	-0.4
4,305,296	+		GFF4298	0.22	-0.9
4,305,296	+		GFF4298	0.22	-1.1
4,305,296	+		GFF4298	0.22	-1.3
4,305,296	+		GFF4298	0.22	+0.0
4,305,296	+		GFF4298	0.22	+0.4
4,305,296	+		GFF4298	0.22	-1.4
4,305,302	-		GFF4298	0.23	+0.3
4,305,302	-		GFF4298	0.23	+0.3
4,305,302	-		GFF4298	0.23	+0.9
4,305,302	-		GFF4298	0.23	+1.0
4,305,302	-		GFF4298	0.23	-1.6
4,305,302	-		GFF4298	0.23	-0.5
4,305,302	-		GFF4298	0.23	+0.9
4,305,302	-		GFF4298	0.23	+0.3
4,305,302	-		GFF4298	0.23	-1.4
4,305,302	-		GFF4298	0.23	-0.7
4,305,302	-		GFF4298	0.23	-0.1
4,305,302	-		GFF4298	0.23	+0.9
4,305,302	-		GFF4298	0.23	-0.4
4,305,302	-		GFF4298	0.23	-0.3
4,305,302	-		GFF4298	0.23	+0.3
4,305,304	-		GFF4298	0.23	-1.9
4,305,304	-		GFF4298	0.23	+1.1
4,305,304	-		GFF4298	0.23	-0.4
4,305,304	-		GFF4298	0.23	-0.2
4,305,304	-		GFF4298	0.23	+0.9
4,305,315	+		GFF4298	0.23	-1.4
4,305,315	+		GFF4298	0.23	-0.4
4,305,320	+		GFF4298	0.23	-2.8
4,305,320	+		GFF4298	0.23	-0.9
4,305,320	+		GFF4298	0.23	-0.4
4,305,328	-		GFF4298	0.23	+1.0
4,305,328	-		GFF4298	0.23	+0.4
4,305,328	-		GFF4298	0.23	-1.2
4,305,328	-		GFF4298	0.23	+0.7
4,305,328	-		GFF4298	0.23	+2.6
4,305,328	-		GFF4298	0.23	-0.8
4,305,335	-		GFF4298	0.24	+0.4
4,305,347	-		GFF4298	0.24	-0.4
4,305,350	+		GFF4298	0.24	-1.1
4,305,350	+		GFF4298	0.24	+0.1
4,305,350	+		GFF4298	0.24	-0.1
4,305,350	+		GFF4298	0.24	+0.5
4,305,350	+		GFF4298	0.24	-0.1
4,305,350	-		GFF4298	0.24	+0.3
4,305,358	-		GFF4298	0.24	+0.3
4,305,358	-		GFF4298	0.24	+0.2
4,305,360	+		GFF4298	0.24	-0.3
4,305,361	+		GFF4298	0.24	-0.8
4,305,366	+		GFF4298	0.25	-0.4
4,305,371	+		GFF4298	0.25	-0.4
4,305,374	-		GFF4298	0.25	-1.9
4,305,374	-		GFF4298	0.25	-0.7
4,305,379	-		GFF4298	0.25	-0.9
4,305,379	-		GFF4298	0.25	-0.7
4,305,379	-		GFF4298	0.25	-1.4
4,305,381	+		GFF4298	0.25	-0.9
4,305,391	+		GFF4298	0.25	+0.3
4,305,391	+		GFF4298	0.25	-1.1
4,305,401	+		GFF4298	0.26	-1.5
4,305,401	+		GFF4298	0.26	-0.7
4,305,401	+		GFF4298	0.26	+0.6
4,305,401	+		GFF4298	0.26	-0.4
4,305,409	-		GFF4298	0.26	-0.1
4,305,409	-		GFF4298	0.26	-0.1
4,305,416	+		GFF4298	0.26	+0.3
4,305,424	-		GFF4298	0.26	-1.3
4,305,424	-		GFF4298	0.26	-0.1
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4,305,440	+		GFF4298	0.27	+0.1
4,305,440	+		GFF4298	0.27	+1.5
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4,305,448	-		GFF4298	0.27	-0.4
4,305,448	-		GFF4298	0.27	+0.7
4,305,453	+		GFF4298	0.27	-0.8
4,305,453	-		GFF4298	0.27	-1.1
4,305,460	+		GFF4298	0.27	+1.2
4,305,460	+		GFF4298	0.27	-0.1
4,305,460	+		GFF4298	0.27	-2.0
4,305,460	+		GFF4298	0.27	-0.9
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4,305,468	-		GFF4298	0.28	-0.6
4,305,491	+		GFF4298	0.28	+0.7
4,305,493	+		GFF4298	0.28	-1.4
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4,305,499	-		GFF4298	0.29	+0.2
4,305,500	-		GFF4298	0.29	+0.0
4,305,500	-		GFF4298	0.29	+1.1
4,305,501	-		GFF4298	0.29	+0.4
4,305,521	-		GFF4298	0.29	-2.2
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4,305,545	+		GFF4298	0.30	+0.3
4,305,545	+		GFF4298	0.30	-0.0
4,305,545	+		GFF4298	0.30	-2.4
4,305,545	+		GFF4298	0.30	-1.1
4,305,545	+		GFF4298	0.30	-2.1
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4,305,545	+		GFF4298	0.30	+0.0
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4,305,553	-		GFF4298	0.30	+0.2
4,305,553	-		GFF4298	0.30	+0.4
4,305,572	+		GFF4298	0.31	-0.4
4,305,572	+		GFF4298	0.31	-0.0
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4,305,587	+		GFF4298	0.31	-1.1
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4,305,587	+		GFF4298	0.31	+0.0
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4,305,587	+		GFF4298	0.31	-0.4
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4,305,595	-		GFF4298	0.32	-1.1
4,305,595	-		GFF4298	0.32	-0.5
4,305,595	-		GFF4298	0.32	-0.6
4,305,595	-		GFF4298	0.32	+0.3
4,305,595	-		GFF4298	0.32	+0.3
4,305,595	-		GFF4298	0.32	-1.3
4,305,595	-		GFF4298	0.32	-1.1
4,305,595	-		GFF4298	0.32	-0.3
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4,305,602	+		GFF4298	0.32	+0.3
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4,305,610	-		GFF4298	0.32	-1.4
4,305,617	-		GFF4298	0.32	-0.8
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4,305,648	+		GFF4298	0.33	-0.7
4,305,653	+		GFF4298	0.33	-1.1
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4,305,665	+		GFF4298	0.34	-0.1
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4,305,677	+		GFF4298	0.34	+0.2
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4,305,685	+		GFF4298	0.34	-1.1
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4,305,685	-		GFF4298	0.34	+0.2
4,305,685	-		GFF4298	0.34	+0.0
4,305,685	-		GFF4298	0.34	-2.0
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4,305,692	-		GFF4298	0.34	-1.2
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4,305,735	-		GFF4298	0.36	-0.3
4,305,742	+		GFF4298	0.36	-1.1
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4,305,742	+		GFF4298	0.36	-1.1
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4,305,742	+		GFF4298	0.36	-0.1
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4,305,750	-		GFF4298	0.36	-1.9
4,305,750	-		GFF4298	0.36	+0.9
4,305,750	-		GFF4298	0.36	-0.6
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4,305,760	-		GFF4298	0.37	+0.6
4,305,767	+		GFF4298	0.37	+0.6
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4,306,113	-		GFF4298	0.47	-0.8
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4,306,149	-		GFF4298	0.48	-2.1
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4,306,169	-		GFF4298	0.49	-1.1
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4,307,430	-		GFF4298	0.87	-0.1
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4,307,531	+				+0.9
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4,307,581	-				+0.1
4,307,589	+				-1.7
4,307,605	-				+0.8
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