Strain Fitness in Sphingobium sp. HT1-2 around GFF4256

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,271,917	+				+0.4
4,271,950	-				-1.4
4,271,956	+				-1.9
4,271,957	-				+0.7
4,271,993	+		GFF4254	0.16	-0.9
4,271,993	+		GFF4254	0.16	+0.5
4,271,993	+		GFF4254	0.16	-0.3
4,271,993	+		GFF4254	0.16	-2.1
4,271,993	+		GFF4254	0.16	+0.8
4,271,993	+		GFF4254	0.16	-1.5
4,271,993	+		GFF4254	0.16	-2.1
4,271,993	+		GFF4254	0.16	+0.1
4,271,993	+		GFF4254	0.16	+0.2
4,271,993	+		GFF4254	0.16	-0.2
4,271,993	+		GFF4254	0.16	+0.1
4,271,993	+		GFF4254	0.16	-0.1
4,271,993	+		GFF4254	0.16	+0.6
4,271,993	+		GFF4254	0.16	+0.0
4,271,993	+		GFF4254	0.16	-1.6
4,271,993	+		GFF4254	0.16	-0.5
4,271,993	+		GFF4254	0.16	-2.1
4,271,993	+		GFF4254	0.16	+1.0
4,271,993	+		GFF4254	0.16	-0.3
4,271,993	+		GFF4254	0.16	+0.6
4,271,993	+		GFF4254	0.16	-0.4
4,271,993	+		GFF4254	0.16	+0.2
4,271,998	+		GFF4254	0.18	+0.3
4,271,998	+		GFF4254	0.18	+0.3
4,272,001	-		GFF4254	0.19	+0.2
4,272,001	-		GFF4254	0.19	-0.4
4,272,001	-		GFF4254	0.19	+1.6
4,272,001	-		GFF4254	0.19	+0.4
4,272,001	-		GFF4254	0.19	+0.4
4,272,001	-		GFF4254	0.19	-0.3
4,272,001	-		GFF4254	0.19	-0.0
4,272,001	-		GFF4254	0.19	+0.7
4,272,001	-		GFF4254	0.19	-0.9
4,272,001	-		GFF4254	0.19	-0.3
4,272,001	-		GFF4254	0.19	-1.3
4,272,001	-		GFF4254	0.19	-0.7
4,272,001	-		GFF4254	0.19	+0.1
4,272,001	-		GFF4254	0.19	-2.1
4,272,001	-		GFF4254	0.19	-0.6
4,272,001	-		GFF4254	0.19	-0.4
4,272,001	-		GFF4254	0.19	+0.5
4,272,001	-		GFF4254	0.19	-0.9
4,272,001	-		GFF4254	0.19	-0.0
4,272,001	-		GFF4254	0.19	+1.0
4,272,003	+		GFF4254	0.20	+1.2
4,272,034	-		GFF4254	0.31	-1.5
4,272,059	-		GFF4254	0.39	+1.1
4,272,087	-		GFF4254	0.49	-0.5
4,272,092	-		GFF4254	0.51	-0.0
4,272,092	-		GFF4254	0.51	-0.3
4,272,092	-		GFF4254	0.51	-0.4
4,272,106	-		GFF4254	0.56	+0.5
4,272,111	+		GFF4254	0.58	+0.9
4,272,111	+		GFF4254	0.58	-0.2
4,272,111	+		GFF4254	0.58	+0.3
4,272,111	+		GFF4254	0.58	-0.1
4,272,111	+		GFF4254	0.58	-1.6
4,272,119	-		GFF4254	0.60	+0.8
4,272,119	-		GFF4254	0.60	+0.3
4,272,132	+		GFF4254	0.65	-0.1
4,272,132	+		GFF4254	0.65	+0.5
4,272,132	+		GFF4254	0.65	-0.9
4,272,132	+		GFF4254	0.65	+1.3
4,272,140	-		GFF4254	0.68	+0.2
4,272,143	-		GFF4254	0.69	+0.0
4,272,146	+		GFF4254	0.70	-0.3
4,272,153	-		GFF4254	0.72	+0.8
4,272,155	-		GFF4254	0.73	-0.0
4,272,170	-		GFF4254	0.78	+0.1
4,272,201	+		GFF4254	0.89	+0.5
4,272,201	+		GFF4254	0.89	-1.7
4,272,220	+				+0.3
4,272,220	+				-1.3
4,272,220	+				+0.7
4,272,224	-				+0.9
4,272,225	+				+1.0
4,272,230	+				-0.6
4,272,233	-				+0.4
4,272,233	-				-0.7
4,272,234	-				+0.9
4,272,235	+				+0.2
4,272,241	+				-1.5
4,272,245	+				+0.9
4,272,250	+				-0.9
4,272,250	+				+0.4
4,272,250	+				-0.3
4,272,250	+				-0.6
4,272,250	-				-0.1
4,272,255	+				+0.7
4,272,257	+				-0.0
4,272,257	+				-1.9
4,272,257	+				-1.1
4,272,258	-				-0.1
4,272,263	-				+0.8
4,272,263	-				-0.3
4,272,265	-				-0.1
4,272,296	+				+0.3
4,272,299	+				-0.7
4,272,317	-		GFF4255	0.11	-0.6
4,272,322	-		GFF4255	0.12	-0.6
4,272,324	+		GFF4255	0.12	+0.5
4,272,324	+		GFF4255	0.12	-0.1
4,272,324	+		GFF4255	0.12	-1.5
4,272,324	+		GFF4255	0.12	-1.7
4,272,324	+		GFF4255	0.12	-0.2
4,272,332	-		GFF4255	0.13	-0.3
4,272,332	-		GFF4255	0.13	-2.3
4,272,345	+		GFF4255	0.16	-0.1
4,272,353	-		GFF4255	0.17	+0.2
4,272,353	-		GFF4255	0.17	-2.1
4,272,381	+		GFF4255	0.23	-1.4
4,272,391	-		GFF4255	0.25	-0.4
4,272,402	+		GFF4255	0.27	+0.7
4,272,410	-		GFF4255	0.28	-1.5
4,272,413	+		GFF4255	0.29	+0.4
4,272,421	-		GFF4255	0.30	+1.2
4,272,421	-		GFF4255	0.30	-2.0
4,272,426	+		GFF4255	0.31	-0.7
4,272,436	-		GFF4255	0.33	-0.3
4,272,436	-		GFF4255	0.33	-1.7
4,272,462	+		GFF4255	0.38	-0.8
4,272,469	-		GFF4255	0.39	+0.5
4,272,474	+		GFF4255	0.40	-1.7
4,272,475	-		GFF4255	0.40	+0.3
4,272,475	-		GFF4255	0.40	-0.6
4,272,475	-		GFF4255	0.40	-1.0
4,272,480	-		GFF4255	0.41	+0.1
4,272,482	-		GFF4255	0.42	+0.9
4,272,495	+		GFF4255	0.44	+0.1
4,272,513	-		GFF4255	0.47	+1.1
4,272,517	+		GFF4255	0.48	+0.5
4,272,525	-		GFF4255	0.50	-0.2
4,272,539	-		GFF4255	0.52	-0.8
4,272,554	-		GFF4255	0.55	-0.3
4,272,554	-		GFF4255	0.55	-1.1
4,272,556	+		GFF4255	0.55	-1.3
4,272,559	-		GFF4255	0.56	+0.5
4,272,559	-		GFF4255	0.56	+0.2
4,272,564	-		GFF4255	0.57	+0.4
4,272,564	-		GFF4255	0.57	-2.3
4,272,568	-		GFF4255	0.58	+1.5
4,272,572	+		GFF4255	0.58	+0.4
4,272,572	+		GFF4255	0.58	-0.2
4,272,572	+		GFF4255	0.58	-0.7
4,272,572	+		GFF4255	0.58	+0.8
4,272,577	+		GFF4255	0.59	-0.2
4,272,580	+		GFF4255	0.60	-0.5
4,272,580	-		GFF4255	0.60	-0.5
4,272,585	-		GFF4255	0.61	-0.3
4,272,599	+		GFF4255	0.63	-0.6
4,272,600	+		GFF4255	0.64	+0.1
4,272,601	-		GFF4255	0.64	+0.2
4,272,606	+		GFF4255	0.65	-0.4
4,272,610	+		GFF4255	0.66	+1.2
4,272,610	-		GFF4255	0.66	-2.5
4,272,641	+		GFF4255	0.71	+0.7
4,272,660	-		GFF4255	0.75	-0.4
4,272,660	-		GFF4255	0.75	-1.5
4,272,668	+		GFF4255	0.76	-0.7
4,272,668	+		GFF4255	0.76	-0.2
4,272,673	+		GFF4255	0.77	-1.4
4,272,673	+		GFF4255	0.77	-1.4
4,272,681	-		GFF4255	0.79	-0.2
4,272,698	+		GFF4255	0.82	-1.1
4,272,698	+		GFF4255	0.82	+0.2
4,272,708	+		GFF4255	0.84	-0.3
4,272,708	+		GFF4255	0.84	-0.3
4,272,716	-		GFF4255	0.85	-0.5
4,272,718	+		GFF4255	0.86	-1.2
4,272,748	+				-0.3
4,272,770	-				-0.7
4,272,788	+				+0.5
4,272,788	+				-1.4
4,272,802	-				+0.3
4,272,802	-				-2.4
4,272,802	-				+0.5
4,272,802	-				+0.6
4,272,845	+				+0.7
4,272,847	+				-0.6
4,272,849	+				-1.5
4,272,879	-				+0.6
4,272,883	+				-1.4
4,272,891	-				-1.0
4,272,891	-				-0.6
4,272,893	+				-0.2
4,272,895	+				-1.2
4,272,902	+				-1.5
4,272,902	+				+0.2
4,272,902	+				-1.7
4,272,903	+				-0.7
4,272,903	+				-1.7
4,272,903	+				-0.0
4,272,903	+				-2.9
4,272,910	+				-0.4
4,272,910	-				-1.2
4,272,910	-				-1.0
4,272,910	-				+0.3
4,272,911	-				-0.6
4,272,911	-				-0.2
4,272,911	-				+0.5
4,272,911	-				-0.5
4,272,929	+				-0.1
4,272,945	-				-0.3
4,272,956	+				-0.1
4,272,964	-				-0.7
4,272,964	-				+0.1
4,272,964	-				-0.7
4,272,990	-		GFF4256	0.15	+0.4
4,272,995	-		GFF4256	0.16	-0.2
4,272,999	+		GFF4256	0.16	-1.9
4,273,038	+		GFF4256	0.24	+0.6
4,273,038	+		GFF4256	0.24	-1.0
4,273,038	-		GFF4256	0.24	-1.7
4,273,068	+		GFF4256	0.30	-0.7
4,273,069	+		GFF4256	0.30	-1.1
4,273,069	+		GFF4256	0.30	-0.4
4,273,069	+		GFF4256	0.30	+0.2
4,273,069	+		GFF4256	0.30	+0.2
4,273,069	+		GFF4256	0.30	+0.5
4,273,069	+		GFF4256	0.30	-0.0
4,273,069	+		GFF4256	0.30	-0.0
4,273,069	+		GFF4256	0.30	-2.5
4,273,069	+		GFF4256	0.30	-0.2
4,273,077	-		GFF4256	0.31	+1.2
4,273,077	-		GFF4256	0.31	-0.0
4,273,093	+		GFF4256	0.34	-0.6
4,273,093	+		GFF4256	0.34	+0.3
4,273,093	+		GFF4256	0.34	-0.0
4,273,095	+		GFF4256	0.35	-0.1
4,273,096	-		GFF4256	0.35	-0.4
4,273,128	+		GFF4256	0.41	+0.3
4,273,143	+		GFF4256	0.44	-1.4
4,273,143	+		GFF4256	0.44	-1.2
4,273,143	+		GFF4256	0.44	-0.7
4,273,143	+		GFF4256	0.44	-0.0
4,273,143	+		GFF4256	0.44	-1.5
4,273,143	+		GFF4256	0.44	-1.1
4,273,151	-		GFF4256	0.45	-0.3
4,273,151	-		GFF4256	0.45	-2.2
4,273,151	-		GFF4256	0.45	-0.1
4,273,161	-		GFF4256	0.47	+0.0
4,273,177	-		GFF4256	0.50	-1.4
4,273,197	-		GFF4256	0.54	-1.5
4,273,215	-		GFF4256	0.58	+0.2
4,273,227	+		GFF4256	0.60	-0.3
4,273,243	-		GFF4256	0.63	+0.3
4,273,259	+		GFF4256	0.66	-1.0
4,273,259	+		GFF4256	0.66	-0.1
4,273,278	+		GFF4256	0.70	-1.8
4,273,278	+		GFF4256	0.70	-0.1
4,273,278	+		GFF4256	0.70	-1.2
4,273,286	+		GFF4256	0.71	-0.4
4,273,286	-		GFF4256	0.71	-0.9
4,273,315	+		GFF4256	0.77	-1.4
4,273,315	+		GFF4256	0.77	-0.7
4,273,315	+		GFF4256	0.77	+0.1
4,273,315	+		GFF4256	0.77	+0.7
4,273,315	+		GFF4256	0.77	-1.0
4,273,315	+		GFF4256	0.77	+0.6
4,273,321	+		GFF4256	0.78	+0.5
4,273,323	-		GFF4256	0.78	+1.0
4,273,323	-		GFF4256	0.78	+0.0
4,273,323	-		GFF4256	0.78	+2.1
4,273,344	-		GFF4256	0.82	-2.1
4,273,350	-		GFF4256	0.83	+0.3
4,273,352	+		GFF4256	0.84	-0.1
4,273,365	-		GFF4256	0.86	+0.3
4,273,406	+				+0.3
4,273,406	+				+0.6
4,273,411	+				-0.2
4,273,411	+				+0.2
4,273,411	+				-0.0
4,273,411	+				+0.5
4,273,411	+				+0.1
4,273,411	+				-0.5
4,273,411	+				+0.8
4,273,411	+				+0.4
4,273,411	+				+0.1
4,273,411	+				-0.1
4,273,411	+				+0.3
4,273,411	+				-2.3
4,273,411	+				-0.5
4,273,411	+				+1.1
4,273,411	+				-0.5
4,273,411	+				-1.6
4,273,411	+				-0.5
4,273,411	+				-0.2
4,273,411	+				+0.8
4,273,411	+				-0.3
4,273,411	+				-1.6
4,273,411	+				-2.4
4,273,411	+				+0.9
4,273,411	+				-0.0
4,273,411	+				+1.2
4,273,411	+				+1.0
4,273,411	+				+0.5
4,273,411	+				+0.2
4,273,412	-				-1.0
4,273,414	-				-1.5
4,273,414	-				-0.4
4,273,419	-				-0.2
4,273,419	-				+1.1
4,273,419	-				-0.4
4,273,419	-				+0.5
4,273,419	-				+0.8
4,273,419	-				-0.4
4,273,419	-				+0.0
4,273,419	-				+1.2
4,273,419	-				-0.9
4,273,419	-				+0.3
4,273,419	-				-0.9
4,273,419	-				+0.2
4,273,419	-				-0.8
4,273,419	-				+0.3
4,273,419	-				-2.3
4,273,419	-				+0.8
4,273,419	-				-1.6
4,273,419	-				-2.5
4,273,419	-				-1.4
4,273,419	-				+1.1
4,273,419	-				-1.1
4,273,419	-				-0.4
4,273,419	-				-1.3
4,273,419	-				-0.3
4,273,419	-				-0.3
4,273,419	-				-2.5
4,273,436	+				+0.9
4,273,436	+				-1.5
4,273,438	+				-0.6
4,273,446	+				-0.3
4,273,454	-				-0.7
4,273,454	-				-0.5
4,273,457	+				+1.2
4,273,464	-				+0.6
4,273,465	+				-0.5
4,273,517	-				+1.6
4,273,607	+				-0.8
4,273,607	+				+1.5
4,273,611	+				+0.8
4,273,640	+				-0.5
4,273,689	+		GFF4257	0.14	+0.5
4,273,701	-		GFF4257	0.16	+0.7
4,273,707	+		GFF4257	0.18	+1.3
4,273,715	-		GFF4257	0.19	-0.8
4,273,721	-		GFF4257	0.21	-0.0
4,273,725	+		GFF4257	0.21	+0.9
4,273,728	-		GFF4257	0.22	-0.2
4,273,729	-		GFF4257	0.22	-0.6
4,273,733	-		GFF4257	0.23	-1.0
4,273,733	-		GFF4257	0.23	+1.2
4,273,761	+		GFF4257	0.29	+0.4
4,273,761	+		GFF4257	0.29	+0.5
4,273,761	+		GFF4257	0.29	-0.2
4,273,761	+		GFF4257	0.29	-1.2
4,273,761	+		GFF4257	0.29	-0.3
4,273,769	-		GFF4257	0.31	-0.7
4,273,769	-		GFF4257	0.31	+0.6
4,273,769	-		GFF4257	0.31	-0.0
4,273,769	-		GFF4257	0.31	-0.8
4,273,775	-		GFF4257	0.32	-0.5
4,273,777	+		GFF4257	0.32	+0.1
4,273,779	+		GFF4257	0.33	+0.5
4,273,784	+		GFF4257	0.34	+0.2
4,273,784	+		GFF4257	0.34	-2.4
4,273,789	+		GFF4257	0.35	-0.3
4,273,789	+		GFF4257	0.35	+0.0
4,273,789	+		GFF4257	0.35	+0.3
4,273,789	+		GFF4257	0.35	+0.2
4,273,789	+		GFF4257	0.35	-1.7
4,273,789	+		GFF4257	0.35	-1.1
4,273,789	+		GFF4257	0.35	+0.3
4,273,789	+		GFF4257	0.35	-0.0
4,273,791	-		GFF4257	0.35	-0.0
4,273,797	-		GFF4257	0.37	-0.6
4,273,797	-		GFF4257	0.37	-1.6
4,273,797	-		GFF4257	0.37	-0.4
4,273,797	-		GFF4257	0.37	-1.7
4,273,797	-		GFF4257	0.37	-1.3
4,273,797	-		GFF4257	0.37	+0.2
4,273,797	-		GFF4257	0.37	-0.4
4,273,797	-		GFF4257	0.37	+0.6
4,273,800	+		GFF4257	0.37	-0.3
4,273,800	+		GFF4257	0.37	+0.4
4,273,816	+		GFF4257	0.41	-2.2
4,273,816	+		GFF4257	0.41	+0.2
4,273,820	-		GFF4257	0.42	-0.4
4,273,824	-		GFF4257	0.43	+0.4
4,273,824	-		GFF4257	0.43	+0.4
4,273,832	+		GFF4257	0.44	-0.7
4,273,840	-		GFF4257	0.46	+0.1
4,273,883	-		GFF4257	0.55	+0.1
4,274,055	+				-1.7
4,274,055	+				+0.4
4,274,055	+				-2.0
4,274,055	+				-0.4
4,274,055	+				-0.0
4,274,055	+				-1.0
4,274,055	+				-0.4
4,274,055	+				+0.6
4,274,055	+				-0.1
4,274,055	+				-1.2
4,274,055	+				-0.3
4,274,055	+				+0.1
4,274,055	+				+0.3
4,274,055	+				+0.2
4,274,055	+				-0.3
4,274,055	+				+0.3
4,274,055	+				-2.2
4,274,065	+				+0.2
4,274,091	+				-0.5
4,274,100	-				-1.6
4,274,106	+				+2.4
4,274,146	+				-0.1
4,274,150	-				+0.6
4,274,156	+				-0.1
4,274,156	+				+0.2