Experiment: EMM_noCarbon with Sucrose and Putrescine
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF4213 and GFF4214 are separated by 76 nucleotides GFF4214 and GFF4215 are separated by 31 nucleotides GFF4215 and GFF4216 are separated by 223 nucleotides GFF4216 and GFF4217 are separated by 20 nucleotides GFF4217 and GFF4218 are separated by 156 nucleotides GFF4218 and GFF4219 are separated by 78 nucleotides GFF4219 and GFF4220 are separated by 375 nucleotides
GFF4213 - Mobile element protein, at 4,234,082 to 4,234,474
GFF4213
GFF4214 - Transposase, mutator type, at 4,234,551 to 4,234,697
GFF4214
GFF4215 - Transposase, mutator type, at 4,234,729 to 4,234,839
GFF4215
GFF4216 - hypothetical protein, at 4,235,063 to 4,235,272
GFF4216
GFF4217 - hypothetical protein, at 4,235,293 to 4,235,487
GFF4217
GFF4218 - hypothetical protein, at 4,235,644 to 4,235,769
GFF4218
GFF4219 - hypothetical protein, at 4,235,848 to 4,235,961
GFF4219
GFF4220 - Mannose-1-phosphate guanylyltransferase (EC 2.7.7.13), at 4,236,337 to 4,237,422
GFF4220
Position (kb) 4235
4236 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 4234.299 kb on + strand, within GFF4213 at 4234.299 kb on + strand, within GFF4213 at 4234.299 kb on + strand, within GFF4213 at 4234.299 kb on + strand, within GFF4213 at 4234.299 kb on + strand, within GFF4213 at 4234.299 kb on + strand, within GFF4213 at 4234.299 kb on + strand, within GFF4213 at 4234.299 kb on + strand, within GFF4213 at 4234.299 kb on + strand, within GFF4213 at 4234.299 kb on + strand, within GFF4213 at 4234.299 kb on + strand, within GFF4213 at 4234.299 kb on + strand, within GFF4213 at 4234.299 kb on + strand, within GFF4213 at 4234.307 kb on - strand, within GFF4213 at 4234.307 kb on - strand, within GFF4213 at 4234.307 kb on - strand, within GFF4213 at 4234.307 kb on - strand, within GFF4213 at 4234.307 kb on - strand, within GFF4213 at 4234.307 kb on - strand, within GFF4213 at 4234.307 kb on - strand, within GFF4213 at 4234.307 kb on - strand, within GFF4213 at 4234.307 kb on - strand, within GFF4213 at 4234.307 kb on - strand, within GFF4213 at 4234.344 kb on + strand, within GFF4213 at 4234.356 kb on + strand, within GFF4213 at 4234.356 kb on + strand, within GFF4213 at 4234.376 kb on - strand, within GFF4213 at 4234.379 kb on + strand, within GFF4213 at 4234.379 kb on - strand, within GFF4213 at 4234.386 kb on - strand, within GFF4213 at 4234.387 kb on - strand, within GFF4213 at 4234.389 kb on + strand, within GFF4213 at 4234.404 kb on + strand, within GFF4213 at 4234.404 kb on + strand, within GFF4213 at 4234.409 kb on + strand, within GFF4213 at 4234.409 kb on + strand, within GFF4213 at 4234.409 kb on + strand, within GFF4213 at 4234.417 kb on - strand, within GFF4213 at 4234.417 kb on - strand, within GFF4213 at 4234.417 kb on - strand, within GFF4213 at 4234.417 kb on - strand, within GFF4213 at 4234.417 kb on - strand, within GFF4213 at 4234.451 kb on + strand at 4234.451 kb on + strand at 4234.451 kb on + strand at 4234.451 kb on + strand at 4234.451 kb on + strand at 4234.459 kb on - strand at 4234.459 kb on - strand at 4234.459 kb on - strand at 4234.459 kb on - strand at 4234.492 kb on - strand at 4234.521 kb on - strand at 4234.524 kb on + strand at 4234.539 kb on - strand at 4234.544 kb on + strand at 4234.553 kb on + strand at 4234.583 kb on - strand, within GFF4214 at 4234.593 kb on - strand, within GFF4214 at 4234.609 kb on - strand, within GFF4214 at 4234.642 kb on + strand, within GFF4214 at 4234.677 kb on + strand, within GFF4214 at 4234.680 kb on - strand, within GFF4214 at 4234.702 kb on + strand at 4234.756 kb on + strand, within GFF4215 at 4234.792 kb on - strand, within GFF4215 at 4234.800 kb on + strand, within GFF4215 at 4234.800 kb on + strand, within GFF4215 at 4234.800 kb on + strand, within GFF4215 at 4234.830 kb on + strand at 4234.832 kb on - strand at 4234.839 kb on + strand at 4234.861 kb on + strand at 4234.871 kb on + strand at 4234.878 kb on - strand at 4234.883 kb on - strand at 4234.888 kb on - strand at 4234.893 kb on + strand at 4234.896 kb on - strand at 4234.901 kb on + strand at 4234.903 kb on - strand at 4234.908 kb on + strand at 4234.928 kb on + strand at 4234.936 kb on - strand at 4234.936 kb on - strand at 4234.971 kb on + strand at 4234.992 kb on + strand at 4234.992 kb on + strand at 4235.000 kb on - strand at 4235.000 kb on - strand at 4235.000 kb on - strand at 4235.000 kb on - strand at 4235.000 kb on - strand at 4235.000 kb on - strand at 4235.002 kb on + strand at 4235.010 kb on - strand at 4235.030 kb on - strand at 4235.033 kb on + strand at 4235.049 kb on - strand at 4235.084 kb on + strand, within GFF4216 at 4235.084 kb on + strand, within GFF4216 at 4235.084 kb on + strand, within GFF4216 at 4235.092 kb on - strand, within GFF4216 at 4235.098 kb on + strand, within GFF4216 at 4235.098 kb on - strand, within GFF4216 at 4235.115 kb on - strand, within GFF4216 at 4235.126 kb on + strand, within GFF4216 at 4235.145 kb on - strand, within GFF4216 at 4235.193 kb on + strand, within GFF4216 at 4235.239 kb on + strand, within GFF4216 at 4235.290 kb on + strand at 4235.308 kb on + strand at 4235.332 kb on - strand, within GFF4217 at 4235.333 kb on + strand, within GFF4217 at 4235.341 kb on - strand, within GFF4217 at 4235.411 kb on + strand, within GFF4217 at 4235.549 kb on - strand at 4235.551 kb on + strand at 4235.559 kb on - strand at 4235.559 kb on - strand at 4235.559 kb on - strand at 4235.574 kb on + strand at 4235.582 kb on - strand at 4235.582 kb on - strand at 4235.582 kb on - strand at 4235.600 kb on - strand at 4235.649 kb on + strand at 4235.662 kb on + strand, within GFF4218 at 4235.677 kb on + strand, within GFF4218 at 4235.715 kb on - strand, within GFF4218 at 4235.758 kb on + strand at 4235.758 kb on + strand at 4235.772 kb on + strand at 4235.773 kb on + strand at 4235.779 kb on + strand at 4235.780 kb on - strand at 4235.782 kb on - strand at 4235.784 kb on + strand at 4235.784 kb on + strand at 4235.784 kb on + strand at 4235.787 kb on - strand at 4235.787 kb on - strand at 4235.792 kb on - strand at 4235.802 kb on + strand at 4235.802 kb on + strand at 4235.802 kb on + strand at 4235.802 kb on + strand at 4235.802 kb on + strand at 4235.802 kb on + strand at 4235.802 kb on + strand at 4235.810 kb on + strand at 4235.810 kb on - strand at 4235.810 kb on - strand at 4235.810 kb on - strand at 4235.810 kb on - strand at 4235.825 kb on + strand at 4235.828 kb on - strand at 4235.844 kb on + strand at 4235.844 kb on + strand at 4235.844 kb on + strand at 4235.844 kb on + strand at 4235.844 kb on + strand at 4235.844 kb on + strand at 4235.844 kb on + strand at 4235.852 kb on - strand at 4235.852 kb on - strand at 4235.852 kb on - strand at 4235.852 kb on - strand at 4235.867 kb on + strand, within GFF4219 at 4235.867 kb on + strand, within GFF4219 at 4235.867 kb on + strand, within GFF4219 at 4235.867 kb on + strand, within GFF4219 at 4235.867 kb on + strand, within GFF4219 at 4235.867 kb on + strand, within GFF4219 at 4235.867 kb on + strand, within GFF4219 at 4235.867 kb on + strand, within GFF4219 at 4235.867 kb on + strand, within GFF4219 at 4235.867 kb on + strand, within GFF4219 at 4235.867 kb on + strand, within GFF4219 at 4235.867 kb on + strand, within GFF4219 at 4235.867 kb on + strand, within GFF4219 at 4235.867 kb on + strand, within GFF4219 at 4235.868 kb on + strand, within GFF4219 at 4235.872 kb on + strand, within GFF4219 at 4235.875 kb on - strand, within GFF4219 at 4235.875 kb on - strand, within GFF4219 at 4235.875 kb on - strand, within GFF4219 at 4235.875 kb on - strand, within GFF4219 at 4235.875 kb on - strand, within GFF4219 at 4235.875 kb on - strand, within GFF4219 at 4235.875 kb on - strand, within GFF4219 at 4235.875 kb on - strand, within GFF4219 at 4235.877 kb on + strand, within GFF4219 at 4235.885 kb on - strand, within GFF4219 at 4235.900 kb on - strand, within GFF4219 at 4235.911 kb on + strand, within GFF4219 at 4235.911 kb on + strand, within GFF4219 at 4235.911 kb on + strand, within GFF4219 at 4235.911 kb on + strand, within GFF4219 at 4235.919 kb on - strand, within GFF4219 at 4235.919 kb on - strand, within GFF4219 at 4235.919 kb on - strand, within GFF4219 at 4235.919 kb on - strand, within GFF4219 at 4235.919 kb on - strand, within GFF4219 at 4235.919 kb on - strand, within GFF4219 at 4235.973 kb on - strand at 4235.997 kb on - strand at 4236.002 kb on - strand at 4236.022 kb on - strand at 4236.032 kb on - strand at 4236.073 kb on + strand at 4236.081 kb on - strand at 4236.087 kb on - strand at 4236.088 kb on + strand at 4236.092 kb on - strand at 4236.115 kb on + strand at 4236.123 kb on - strand at 4236.140 kb on + strand at 4236.140 kb on + strand at 4236.149 kb on - strand at 4236.171 kb on - strand at 4236.178 kb on - strand at 4236.196 kb on + strand at 4236.197 kb on - strand at 4236.204 kb on - strand at 4236.204 kb on - strand at 4236.204 kb on - strand at 4236.204 kb on - strand at 4236.204 kb on - strand at 4236.204 kb on - strand at 4236.215 kb on - strand at 4236.252 kb on + strand at 4236.334 kb on + strand at 4236.363 kb on + strand at 4236.365 kb on + strand at 4236.388 kb on + strand at 4236.396 kb on + strand at 4236.396 kb on + strand at 4236.422 kb on + strand at 4236.422 kb on + strand at 4236.422 kb on + strand at 4236.430 kb on + strand at 4236.430 kb on - strand at 4236.430 kb on - strand at 4236.456 kb on + strand, within GFF4220 at 4236.456 kb on - strand, within GFF4220 at 4236.473 kb on + strand, within GFF4220
Per-strain Table
Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine remove 4,234,299 + GFF4213 0.55 +0.1 4,234,299 + GFF4213 0.55 +0.9 4,234,299 + GFF4213 0.55 -1.4 4,234,299 + GFF4213 0.55 +0.0 4,234,299 + GFF4213 0.55 +0.1 4,234,299 + GFF4213 0.55 -0.5 4,234,299 + GFF4213 0.55 +1.5 4,234,299 + GFF4213 0.55 -1.6 4,234,299 + GFF4213 0.55 -0.5 4,234,299 + GFF4213 0.55 +0.2 4,234,299 + GFF4213 0.55 -0.2 4,234,299 + GFF4213 0.55 -1.9 4,234,299 + GFF4213 0.55 +0.3 4,234,307 - GFF4213 0.57 +0.9 4,234,307 - GFF4213 0.57 +0.1 4,234,307 - GFF4213 0.57 -0.4 4,234,307 - GFF4213 0.57 -0.6 4,234,307 - GFF4213 0.57 -0.1 4,234,307 - GFF4213 0.57 +0.3 4,234,307 - GFF4213 0.57 -2.1 4,234,307 - GFF4213 0.57 -2.1 4,234,307 - GFF4213 0.57 +1.6 4,234,307 - GFF4213 0.57 -0.4 4,234,344 + GFF4213 0.67 +0.7 4,234,356 + GFF4213 0.70 -1.4 4,234,356 + GFF4213 0.70 -0.9 4,234,376 - GFF4213 0.75 -1.2 4,234,379 + GFF4213 0.76 +1.1 4,234,379 - GFF4213 0.76 +0.3 4,234,386 - GFF4213 0.77 +0.7 4,234,387 - GFF4213 0.78 +0.6 4,234,389 + GFF4213 0.78 +0.2 4,234,404 + GFF4213 0.82 -1.4 4,234,404 + GFF4213 0.82 +0.6 4,234,409 + GFF4213 0.83 +0.4 4,234,409 + GFF4213 0.83 +0.9 4,234,409 + GFF4213 0.83 -1.0 4,234,417 - GFF4213 0.85 -0.1 4,234,417 - GFF4213 0.85 -2.0 4,234,417 - GFF4213 0.85 +1.2 4,234,417 - GFF4213 0.85 -1.5 4,234,417 - GFF4213 0.85 +0.5 4,234,451 + +0.3 4,234,451 + -0.6 4,234,451 + +1.2 4,234,451 + -1.0 4,234,451 + +0.9 4,234,459 - +0.9 4,234,459 - -0.9 4,234,459 - +0.3 4,234,459 - -0.3 4,234,492 - +0.2 4,234,521 - +0.4 4,234,524 + +0.4 4,234,539 - -0.0 4,234,544 + +1.0 4,234,553 + +1.7 4,234,583 - GFF4214 0.22 -0.1 4,234,593 - GFF4214 0.29 -1.0 4,234,609 - GFF4214 0.39 -0.0 4,234,642 + GFF4214 0.62 +1.0 4,234,677 + GFF4214 0.86 -1.8 4,234,680 - GFF4214 0.88 +0.7 4,234,702 + -1.6 4,234,756 + GFF4215 0.24 +1.0 4,234,792 - GFF4215 0.57 +0.0 4,234,800 + GFF4215 0.64 +0.3 4,234,800 + GFF4215 0.64 -0.6 4,234,800 + GFF4215 0.64 -0.6 4,234,830 + -0.5 4,234,832 - +0.3 4,234,839 + -0.6 4,234,861 + +0.6 4,234,871 + -0.5 4,234,878 - -0.1 4,234,883 - -1.3 4,234,888 - -1.7 4,234,893 + +0.2 4,234,896 - -1.8 4,234,901 + +0.2 4,234,903 - +0.1 4,234,908 + +0.0 4,234,928 + -0.4 4,234,936 - +0.5 4,234,936 - +0.6 4,234,971 + +0.4 4,234,992 + +0.2 4,234,992 + -1.1 4,235,000 - +0.0 4,235,000 - +0.5 4,235,000 - +0.7 4,235,000 - +0.0 4,235,000 - -1.4 4,235,000 - +1.2 4,235,002 + -0.4 4,235,010 - -0.1 4,235,030 - -0.7 4,235,033 + +0.9 4,235,049 - +0.6 4,235,084 + GFF4216 0.10 -1.7 4,235,084 + GFF4216 0.10 -0.5 4,235,084 + GFF4216 0.10 -0.4 4,235,092 - GFF4216 0.14 -1.3 4,235,098 + GFF4216 0.17 -1.0 4,235,098 - GFF4216 0.17 -0.8 4,235,115 - GFF4216 0.25 +1.1 4,235,126 + GFF4216 0.30 +0.5 4,235,145 - GFF4216 0.39 +0.4 4,235,193 + GFF4216 0.62 -0.8 4,235,239 + GFF4216 0.84 -1.2 4,235,290 + +0.4 4,235,308 + -1.1 4,235,332 - GFF4217 0.20 -1.1 4,235,333 + GFF4217 0.21 -2.0 4,235,341 - GFF4217 0.25 +0.6 4,235,411 + GFF4217 0.61 -1.1 4,235,549 - -2.7 4,235,551 + -0.9 4,235,559 - +0.8 4,235,559 - +0.7 4,235,559 - -2.0 4,235,574 + -0.1 4,235,582 - +0.2 4,235,582 - -0.8 4,235,582 - -0.1 4,235,600 - +0.3 4,235,649 + +0.1 4,235,662 + GFF4218 0.14 -0.1 4,235,677 + GFF4218 0.26 -2.3 4,235,715 - GFF4218 0.56 -0.5 4,235,758 + -1.4 4,235,758 + -0.5 4,235,772 + +1.5 4,235,773 + -3.7 4,235,779 + -0.4 4,235,780 - -0.3 4,235,782 - -0.7 4,235,784 + +0.8 4,235,784 + -0.4 4,235,784 + -0.0 4,235,787 - +0.2 4,235,787 - -0.2 4,235,792 - +0.1 4,235,802 + +0.2 4,235,802 + -0.4 4,235,802 + -0.3 4,235,802 + -0.6 4,235,802 + +0.2 4,235,802 + -1.2 4,235,802 + +1.2 4,235,810 + -1.5 4,235,810 - +0.3 4,235,810 - -0.6 4,235,810 - -0.1 4,235,810 - -1.8 4,235,825 + -0.4 4,235,828 - +0.3 4,235,844 + +1.0 4,235,844 + -0.2 4,235,844 + -1.6 4,235,844 + +0.9 4,235,844 + -0.1 4,235,844 + -0.1 4,235,844 + +0.8 4,235,852 - -1.7 4,235,852 - +1.3 4,235,852 - +0.8 4,235,852 - -0.5 4,235,867 + GFF4219 0.17 -1.9 4,235,867 + GFF4219 0.17 -0.6 4,235,867 + GFF4219 0.17 -0.8 4,235,867 + GFF4219 0.17 -0.2 4,235,867 + GFF4219 0.17 -0.4 4,235,867 + GFF4219 0.17 -1.0 4,235,867 + GFF4219 0.17 +0.2 4,235,867 + GFF4219 0.17 +0.2 4,235,867 + GFF4219 0.17 +0.9 4,235,867 + GFF4219 0.17 +0.6 4,235,867 + GFF4219 0.17 +0.8 4,235,867 + GFF4219 0.17 +0.9 4,235,867 + GFF4219 0.17 -1.1 4,235,867 + GFF4219 0.17 -1.8 4,235,868 + GFF4219 0.18 -1.9 4,235,872 + GFF4219 0.21 -2.0 4,235,875 - GFF4219 0.24 -0.9 4,235,875 - GFF4219 0.24 -0.7 4,235,875 - GFF4219 0.24 +0.1 4,235,875 - GFF4219 0.24 -0.5 4,235,875 - GFF4219 0.24 +0.5 4,235,875 - GFF4219 0.24 -1.1 4,235,875 - GFF4219 0.24 +1.6 4,235,875 - GFF4219 0.24 -1.0 4,235,877 + GFF4219 0.25 +0.3 4,235,885 - GFF4219 0.32 -0.4 4,235,900 - GFF4219 0.46 +0.2 4,235,911 + GFF4219 0.55 -0.4 4,235,911 + GFF4219 0.55 +0.4 4,235,911 + GFF4219 0.55 +0.0 4,235,911 + GFF4219 0.55 +0.5 4,235,919 - GFF4219 0.62 -2.0 4,235,919 - GFF4219 0.62 +0.3 4,235,919 - GFF4219 0.62 -0.8 4,235,919 - GFF4219 0.62 -0.8 4,235,919 - GFF4219 0.62 -1.1 4,235,919 - GFF4219 0.62 -0.1 4,235,973 - +1.2 4,235,997 - +0.2 4,236,002 - +0.3 4,236,022 - +0.6 4,236,032 - +0.2 4,236,073 + -0.7 4,236,081 - -0.6 4,236,087 - -0.8 4,236,088 + -0.4 4,236,092 - +0.2 4,236,115 + -0.5 4,236,123 - +0.2 4,236,140 + +0.6 4,236,140 + -0.5 4,236,149 - -1.5 4,236,171 - -1.4 4,236,178 - -1.0 4,236,196 + -2.4 4,236,197 - -2.4 4,236,204 - -2.6 4,236,204 - -1.9 4,236,204 - -0.9 4,236,204 - -1.9 4,236,204 - -1.5 4,236,204 - +0.2 4,236,215 - -2.2 4,236,252 + -1.3 4,236,334 + +0.4 4,236,363 + +0.6 4,236,365 + -0.7 4,236,388 + +0.2 4,236,396 + -0.3 4,236,396 + -2.0 4,236,422 + -2.2 4,236,422 + -2.2 4,236,422 + -0.2 4,236,430 + -1.4 4,236,430 - -0.0 4,236,430 - -0.7 4,236,456 + GFF4220 0.11 +1.2 4,236,456 - GFF4220 0.11 -0.9 4,236,473 + GFF4220 0.13 -1.4
Or see this region's nucleotide sequence