Strain Fitness in Sphingobium sp. HT1-2 around GFF4177

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,194,467	+		GFF4175	0.78	-0.4
4,194,467	+		GFF4175	0.78	+0.6
4,194,472	+		GFF4175	0.81	+0.0
4,194,472	+		GFF4175	0.81	-0.3
4,194,475	-		GFF4175	0.84	-0.5
4,194,475	-		GFF4175	0.84	+0.1
4,194,475	-		GFF4175	0.84	+0.4
4,194,475	-		GFF4175	0.84	+1.1
4,194,475	-		GFF4175	0.84	+0.1
4,194,475	-		GFF4175	0.84	-1.3
4,194,475	-		GFF4175	0.84	-0.3
4,194,478	-		GFF4175	0.86	+0.1
4,194,480	-		GFF4175	0.88	+0.3
4,194,480	-		GFF4175	0.88	+0.6
4,194,480	-		GFF4175	0.88	+0.4
4,194,484	+				-0.6
4,194,484	+				-0.1
4,194,485	-				-0.4
4,194,492	-				+0.0
4,194,492	-				+0.1
4,194,492	-				+0.8
4,194,492	-				+0.1
4,194,496	+				-1.1
4,194,496	+				-1.3
4,194,496	+				-0.1
4,194,496	+				-2.6
4,194,497	-				+0.8
4,194,497	-				-0.4
4,194,504	-				-0.1
4,194,504	-				-0.3
4,194,509	+				-0.4
4,194,509	+				-1.1
4,194,517	-				-1.2
4,194,517	-				+0.2
4,194,517	-				-0.9
4,194,517	-				+0.2
4,194,527	-				+0.5
4,195,366	-				+0.7
4,195,366	-				-0.2
4,195,366	-				+0.9
4,195,366	-				-0.7
4,195,377	+				+0.0
4,195,378	+				-0.9
4,195,378	+				-2.6
4,195,378	+				-1.0
4,195,383	+				-2.5
4,195,383	+				-1.2
4,195,385	+				-2.3
4,195,386	-				+0.7
4,195,386	-				-1.5
4,195,386	-				+0.2
4,195,386	-				-2.0
4,195,398	+				-0.7
4,195,398	+				+0.3
4,195,400	+				-2.3
4,195,421	-				-0.4
4,195,443	+				-0.5
4,195,449	+				-2.0
4,195,449	+				+0.2
4,195,449	+				-1.3
4,195,493	-				-1.3
4,195,589	+		GFF4177	0.15	-1.3
4,195,672	+		GFF4177	0.26	-0.2
4,195,689	+		GFF4177	0.28	+0.4
4,195,743	+		GFF4177	0.34	-1.5
4,195,743	+		GFF4177	0.34	-2.0
4,195,743	+		GFF4177	0.34	-1.7
4,195,743	+		GFF4177	0.34	-0.0
4,195,743	+		GFF4177	0.34	+1.3
4,195,751	-		GFF4177	0.35	-0.9
4,195,797	+		GFF4177	0.41	-0.2
4,195,797	+		GFF4177	0.41	-0.5
4,195,853	+		GFF4177	0.48	+0.5
4,195,861	-		GFF4177	0.49	+0.1
4,195,894	-		GFF4177	0.53	-1.0
4,195,913	+		GFF4177	0.56	-1.5
4,195,953	+		GFF4177	0.60	-0.2
4,195,976	+		GFF4177	0.63	-0.3
4,195,976	+		GFF4177	0.63	+0.1
4,195,989	-		GFF4177	0.65	-0.5
4,195,994	+		GFF4177	0.66	-1.0
4,196,078	+		GFF4177	0.76	-0.6
4,196,078	+		GFF4177	0.76	-2.0
4,196,125	+		GFF4177	0.82	+0.2
4,196,133	-		GFF4177	0.83	-1.8
4,196,133	-		GFF4177	0.83	-1.4
4,196,145	+		GFF4177	0.84	+1.9
4,196,254	-				-2.7
4,196,256	+				-1.8
4,196,256	+				+0.4
4,196,264	-				-1.0
4,196,264	-				+0.3
4,196,266	+				-0.8
4,196,266	+				+0.1
4,196,274	-				-0.7
4,196,289	+				-0.3
4,196,296	-				-1.0
4,196,296	-				-2.0
4,196,299	+				-2.3
4,196,311	+				-1.6
4,196,315	+				+0.4
4,196,315	+				-1.5
4,196,315	+				-0.2
4,196,315	+				+0.2
4,196,315	+				+1.8
4,196,319	-		GFF4178	0.10	+1.9
4,196,323	-		GFF4178	0.11	+0.1
4,196,361	+		GFF4178	0.20	+1.0
4,196,369	-		GFF4178	0.21	+0.5
4,196,369	-		GFF4178	0.21	-0.1
4,196,373	+		GFF4178	0.22	-0.7
4,196,373	+		GFF4178	0.22	-0.1
4,196,376	-		GFF4178	0.23	+0.9
4,196,378	+		GFF4178	0.23	+0.9
4,196,378	+		GFF4178	0.23	-0.2
4,196,378	+		GFF4178	0.23	-0.1
4,196,378	+		GFF4178	0.23	+1.1
4,196,381	-		GFF4178	0.24	+0.3
4,196,381	-		GFF4178	0.24	-1.3
4,196,381	-		GFF4178	0.24	-0.2
4,196,381	-		GFF4178	0.24	-0.5
4,196,381	-		GFF4178	0.24	+0.2
4,196,386	-		GFF4178	0.25	-1.1
4,196,386	-		GFF4178	0.25	-0.1
4,196,386	-		GFF4178	0.25	+0.5
4,196,388	+		GFF4178	0.25	-1.3
4,196,397	+		GFF4178	0.27	-1.6
4,196,402	+		GFF4178	0.29	-0.3
4,196,402	+		GFF4178	0.29	-0.0
4,196,410	-		GFF4178	0.30	-0.2
4,196,410	-		GFF4178	0.30	-1.1
4,196,437	+		GFF4178	0.36	+0.5
4,196,442	+		GFF4178	0.37	-1.7
4,196,450	-		GFF4178	0.39	-2.3
4,196,450	-		GFF4178	0.39	-0.2
4,196,455	-		GFF4178	0.40	+1.1
4,196,462	+		GFF4178	0.42	-0.2
4,196,462	+		GFF4178	0.42	-1.7
4,196,462	+		GFF4178	0.42	+0.1
4,196,462	+		GFF4178	0.42	-0.5
4,196,462	+		GFF4178	0.42	+0.6
4,196,469	+		GFF4178	0.43	+1.0
4,196,470	-		GFF4178	0.43	-0.2
4,196,470	-		GFF4178	0.43	-1.5
4,196,489	+		GFF4178	0.47	+0.9
4,196,495	+		GFF4178	0.49	+1.4
4,196,495	+		GFF4178	0.49	-1.4
4,196,495	+		GFF4178	0.49	-0.3
4,196,495	+		GFF4178	0.49	+0.3
4,196,495	+		GFF4178	0.49	-0.1
4,196,495	+		GFF4178	0.49	+0.3
4,196,495	+		GFF4178	0.49	-1.3
4,196,495	+		GFF4178	0.49	-0.6
4,196,495	+		GFF4178	0.49	+0.6
4,196,503	-		GFF4178	0.51	+0.4
4,196,503	-		GFF4178	0.51	-1.8
4,196,503	-		GFF4178	0.51	-0.9
4,196,503	-		GFF4178	0.51	-0.9
4,196,503	-		GFF4178	0.51	+0.5
4,196,503	-		GFF4178	0.51	-1.0
4,196,503	-		GFF4178	0.51	-0.6
4,196,508	-		GFF4178	0.52	-0.2
4,196,513	-		GFF4178	0.53	-1.9
4,196,521	-		GFF4178	0.54	+0.1
4,196,522	-		GFF4178	0.55	-0.7
4,196,527	-		GFF4178	0.56	+0.5
4,196,527	-		GFF4178	0.56	+0.2
4,196,535	-		GFF4178	0.58	+0.1
4,196,540	-		GFF4178	0.59	+0.9
4,196,542	-		GFF4178	0.59	+0.0
4,196,553	+		GFF4178	0.61	-0.1
4,196,555	+		GFF4178	0.62	-0.6
4,196,572	-		GFF4178	0.66	+0.6
4,196,583	+		GFF4178	0.68	-0.4
4,196,583	+		GFF4178	0.68	+0.2
4,196,583	+		GFF4178	0.68	-0.5
4,196,591	-		GFF4178	0.70	-0.3
4,196,591	-		GFF4178	0.70	+0.1
4,196,591	-		GFF4178	0.70	-0.7
4,196,591	-		GFF4178	0.70	+0.7
4,196,591	-		GFF4178	0.70	-0.8
4,196,598	+		GFF4178	0.71	-2.7
4,196,609	+		GFF4178	0.74	-0.0
4,196,617	+		GFF4178	0.75	+0.6
4,196,617	+		GFF4178	0.75	+0.7
4,196,617	+		GFF4178	0.75	-0.0
4,196,625	-		GFF4178	0.77	+0.3
4,196,625	-		GFF4178	0.77	-0.3
4,196,636	+		GFF4178	0.80	+0.2
4,196,636	+		GFF4178	0.80	-0.4
4,196,636	+		GFF4178	0.80	-1.6
4,196,636	+		GFF4178	0.80	-0.7
4,196,636	+		GFF4178	0.80	-0.6
4,196,636	+		GFF4178	0.80	+1.3
4,196,636	+		GFF4178	0.80	+0.4
4,196,636	+		GFF4178	0.80	+0.1
4,196,644	-		GFF4178	0.81	+0.1
4,196,644	-		GFF4178	0.81	-0.7
4,196,644	-		GFF4178	0.81	+0.2
4,196,644	-		GFF4178	0.81	+0.5
4,196,644	-		GFF4178	0.81	-0.4
4,196,663	+		GFF4178	0.85	-1.2
4,196,663	+		GFF4178	0.85	-1.0
4,196,663	+		GFF4178	0.85	-1.5
4,196,663	+		GFF4178	0.85	+0.2
4,196,663	+		GFF4178	0.85	-0.3
4,196,663	+		GFF4178	0.85	-2.0
4,196,663	+		GFF4178	0.85	-0.6
4,196,663	+		GFF4178	0.85	-1.3
4,196,663	+		GFF4178	0.85	-0.0
4,196,663	+		GFF4178	0.85	-2.1
4,196,663	+		GFF4178	0.85	-2.2
4,196,663	+		GFF4178	0.85	+0.5
4,196,663	+		GFF4178	0.85	+0.2
4,196,666	-		GFF4178	0.86	-0.6
4,196,666	-		GFF4178	0.86	+0.4
4,196,671	-		GFF4178	0.87	+1.1
4,196,671	-		GFF4178	0.87	-2.1
4,196,671	-		GFF4178	0.87	-0.5
4,196,671	-		GFF4178	0.87	-0.5
4,196,671	-		GFF4178	0.87	+1.5
4,196,671	-		GFF4178	0.87	-0.6
4,196,671	-		GFF4178	0.87	+0.7
4,196,671	-		GFF4178	0.87	+0.6
4,196,671	-		GFF4178	0.87	+1.1
4,196,671	-		GFF4178	0.87	-0.5
4,196,671	-		GFF4178	0.87	-1.3
4,196,673	-		GFF4178	0.88	-0.3
4,196,688	-				-0.8
4,196,703	+				-1.1
4,196,713	-				+0.7
4,196,716	-				-1.5
4,196,742	+				-0.3
4,196,742	+				+1.2
4,196,743	-				-0.8
4,196,745	+				+0.2
4,196,745	+				-1.6
4,196,745	+				+0.1
4,196,747	+				+1.1
4,196,750	+				+0.5
4,196,750	-				-2.2
4,196,750	-				-0.5
4,196,750	-				-0.9
4,196,750	-				-0.6
4,196,750	-				+1.3
4,196,753	-				+0.1
4,196,755	-				-1.8
4,196,755	-				-1.8
4,196,764	+				+0.4
4,196,765	+				+1.5
4,196,767	-				+0.3
4,196,778	-				+0.9
4,196,778	-				+0.3
4,196,783	+				-1.8
4,196,783	+				-0.2
4,196,783	+				-0.2
4,196,783	+				-1.4
4,196,814	+				-0.8
4,196,831	+				-0.5
4,196,831	+				+0.7
4,196,831	+				-1.1
4,196,831	+				-0.8
4,196,831	+				-0.3
4,196,839	-				+0.9
4,196,839	-				+0.3
4,196,839	-				-2.0
4,196,839	-				+0.2
4,196,895	+		GFF4179	0.11	+1.1
4,196,897	+		GFF4179	0.11	+0.3
4,196,897	+		GFF4179	0.11	-1.3
4,196,905	-		GFF4179	0.11	+0.5
4,196,913	+		GFF4179	0.12	-2.1
4,196,913	+		GFF4179	0.12	+0.8
4,196,923	+		GFF4179	0.13	+0.5
4,196,925	+		GFF4179	0.13	+0.1
4,196,931	-		GFF4179	0.13	-1.0
4,196,931	-		GFF4179	0.13	-1.3
4,196,938	+		GFF4179	0.14	+0.3
4,196,938	+		GFF4179	0.14	-1.0
4,196,940	+		GFF4179	0.14	+0.7
4,196,948	+		GFF4179	0.14	-2.0
4,196,948	+		GFF4179	0.14	+0.2
4,196,949	-		GFF4179	0.14	-1.3
4,196,950	+		GFF4179	0.15	+0.2
4,196,956	-		GFF4179	0.15	+0.3
4,196,956	-		GFF4179	0.15	-2.0
4,196,958	-		GFF4179	0.15	-0.3
4,196,974	-		GFF4179	0.16	+0.0
4,196,978	+		GFF4179	0.17	-2.4
4,196,985	+		GFF4179	0.17	-1.9
4,196,990	+		GFF4179	0.17	+0.4
4,196,996	+		GFF4179	0.18	-1.7
4,196,998	-		GFF4179	0.18	-1.4
4,196,998	-		GFF4179	0.18	+0.4
4,196,998	-		GFF4179	0.18	-0.5
4,196,998	-		GFF4179	0.18	+0.0
4,197,003	+		GFF4179	0.18	-2.2
4,197,006	+		GFF4179	0.19	+0.7
4,197,006	+		GFF4179	0.19	+0.2
4,197,006	-		GFF4179	0.19	-0.3
4,197,008	+		GFF4179	0.19	-0.5
4,197,008	+		GFF4179	0.19	-0.2
4,197,011	-		GFF4179	0.19	-0.0
4,197,014	-		GFF4179	0.19	-1.8
4,197,014	-		GFF4179	0.19	+0.5
4,197,016	-		GFF4179	0.19	+0.3
4,197,016	-		GFF4179	0.19	-0.4
4,197,068	-		GFF4179	0.23	+0.0
4,197,068	-		GFF4179	0.23	-0.2
4,197,073	+		GFF4179	0.23	+0.5
4,197,073	+		GFF4179	0.23	-2.0
4,197,081	-		GFF4179	0.24	-0.8
4,197,082	+		GFF4179	0.24	-0.6
4,197,083	+		GFF4179	0.24	-0.4
4,197,083	+		GFF4179	0.24	+0.1
4,197,083	+		GFF4179	0.24	-1.9
4,197,093	+		GFF4179	0.25	-0.5
4,197,094	+		GFF4179	0.25	+0.5
4,197,101	-		GFF4179	0.25	-0.9
4,197,102	-		GFF4179	0.26	-1.8
4,197,103	-		GFF4179	0.26	-0.4
4,197,111	+		GFF4179	0.26	+0.3
4,197,143	+		GFF4179	0.28	+0.1
4,197,168	+		GFF4179	0.30	-0.3
4,197,186	-		GFF4179	0.32	-1.7
4,197,207	+		GFF4179	0.33	-0.5
4,197,207	+		GFF4179	0.33	+1.3
4,197,212	+		GFF4179	0.33	-1.3
4,197,215	-		GFF4179	0.34	-0.9