Strain Fitness in Sphingobium sp. HT1-2 around GFF4163

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,185,038	+				-1.9
4,185,041	-				-0.3
4,185,046	-				-0.3
4,185,051	-				-0.7
4,185,070	-				-1.5
4,185,137	+				-0.5
4,185,137	+				-1.6
4,185,138	-				-0.2
4,185,145	-				+0.4
4,185,158	-				-0.5
4,185,158	-				+0.4
4,185,159	+				+0.5
4,185,176	-				-0.1
4,185,220	-				-0.6
4,185,221	+				+0.4
4,185,227	+				+0.8
4,185,235	-				-1.4
4,185,235	-				-0.5
4,185,260	+		GFF4162	0.11	+1.0
4,185,260	+		GFF4162	0.11	-1.2
4,185,268	-		GFF4162	0.12	-1.7
4,185,270	-		GFF4162	0.12	+0.9
4,185,275	+		GFF4162	0.13	-0.2
4,185,275	+		GFF4162	0.13	-1.0
4,185,275	+		GFF4162	0.13	-0.9
4,185,275	+		GFF4162	0.13	-0.8
4,185,283	-		GFF4162	0.14	+0.8
4,185,283	-		GFF4162	0.14	-0.2
4,185,283	-		GFF4162	0.14	+1.0
4,185,283	-		GFF4162	0.14	-1.9
4,185,285	+		GFF4162	0.15	+1.8
4,185,293	-		GFF4162	0.16	-0.8
4,185,295	+		GFF4162	0.16	-0.7
4,185,308	-		GFF4162	0.18	+0.2
4,185,335	+		GFF4162	0.22	-1.1
4,185,378	-		GFF4162	0.28	+0.7
4,185,378	-		GFF4162	0.28	+0.3
4,185,385	-		GFF4162	0.29	-0.2
4,185,386	+		GFF4162	0.30	-1.2
4,185,386	+		GFF4162	0.30	+0.0
4,185,386	+		GFF4162	0.30	-1.0
4,185,391	+		GFF4162	0.30	-1.5
4,185,394	-		GFF4162	0.31	-0.4
4,185,394	-		GFF4162	0.31	+0.0
4,185,394	-		GFF4162	0.31	-2.9
4,185,394	-		GFF4162	0.31	-1.1
4,185,394	-		GFF4162	0.31	-0.5
4,185,394	-		GFF4162	0.31	+1.8
4,185,394	-		GFF4162	0.31	-0.2
4,185,394	-		GFF4162	0.31	-0.3
4,185,394	-		GFF4162	0.31	-0.0
4,185,401	+		GFF4162	0.32	-0.1
4,185,405	+		GFF4162	0.32	+0.0
4,185,413	+		GFF4162	0.34	-0.0
4,185,421	-		GFF4162	0.35	-1.5
4,185,447	-		GFF4162	0.39	+0.0
4,185,462	-		GFF4162	0.41	-0.6
4,185,477	-		GFF4162	0.43	+0.2
4,185,486	-		GFF4162	0.44	+0.6
4,185,487	-		GFF4162	0.45	-0.2
4,185,494	+		GFF4162	0.46	-0.7
4,185,494	+		GFF4162	0.46	-0.9
4,185,494	-		GFF4162	0.46	-1.9
4,185,500	-		GFF4162	0.47	-0.8
4,185,544	+		GFF4162	0.53	-0.6
4,185,563	-		GFF4162	0.56	+0.1
4,185,563	-		GFF4162	0.56	+2.0
4,185,564	-		GFF4162	0.56	+1.2
4,185,577	+		GFF4162	0.58	+0.4
4,185,577	+		GFF4162	0.58	-1.6
4,185,578	+		GFF4162	0.58	-0.7
4,185,585	-		GFF4162	0.59	-1.4
4,185,590	-		GFF4162	0.60	-2.2
4,185,592	+		GFF4162	0.60	-0.4
4,185,592	+		GFF4162	0.60	-0.9
4,185,593	+		GFF4162	0.60	-1.3
4,185,593	+		GFF4162	0.60	+0.5
4,185,593	+		GFF4162	0.60	-2.4
4,185,600	-		GFF4162	0.61	-0.8
4,185,600	-		GFF4162	0.61	+1.0
4,185,607	-		GFF4162	0.62	-0.6
4,185,614	-		GFF4162	0.64	-0.8
4,185,673	-		GFF4162	0.72	+0.5
4,185,704	-		GFF4162	0.77	-2.5
4,185,710	-		GFF4162	0.78	-0.1
4,185,716	+		GFF4162	0.79	-1.6
4,185,720	-		GFF4162	0.79	-2.1
4,185,720	-		GFF4162	0.79	+0.7
4,185,724	-		GFF4162	0.80	+0.3
4,185,724	-		GFF4162	0.80	+0.5
4,185,749	+		GFF4162	0.84	+1.8
4,185,757	-		GFF4162	0.85	+0.8
4,185,757	-		GFF4162	0.85	-1.3
4,185,757	-		GFF4162	0.85	+0.3
4,185,759	+		GFF4162	0.85	-1.8
4,185,764	-		GFF4162	0.86	+1.1
4,185,814	-				-2.0
4,185,841	+				+0.0
4,185,849	-				+0.3
4,185,861	-				-1.5
4,185,913	-				-0.1
4,185,918	+				-1.4
4,185,929	+				+0.3
4,185,929	+				-1.5
4,185,929	+				-2.0
4,185,935	+				+1.3
4,185,937	-				-0.3
4,185,937	-				+0.5
4,185,980	+				-0.5
4,186,009	-				-0.7
4,186,018	+				-0.0
4,186,024	-				-1.4
4,186,026	-				-1.3
4,186,060	+				+0.5
4,186,084	+		GFF4163	0.14	-1.0
4,186,102	+		GFF4163	0.19	-2.3
4,186,102	+		GFF4163	0.19	-0.5
4,186,118	-		GFF4163	0.24	-1.0
4,186,128	-		GFF4163	0.27	+0.4
4,186,141	+		GFF4163	0.30	+0.5
4,186,141	+		GFF4163	0.30	+0.3
4,186,153	+		GFF4163	0.34	+0.9
4,186,153	+		GFF4163	0.34	+0.2
4,186,159	-		GFF4163	0.36	-2.0
4,186,159	-		GFF4163	0.36	-2.9
4,186,161	+		GFF4163	0.36	-0.5
4,186,161	-		GFF4163	0.36	+0.1
4,186,170	+		GFF4163	0.39	+1.3
4,186,172	-		GFF4163	0.39	-0.5
4,186,173	-		GFF4163	0.40	-0.7
4,186,173	-		GFF4163	0.40	+1.3
4,186,183	-		GFF4163	0.42	+0.5
4,186,188	-		GFF4163	0.44	+0.4
4,186,207	-		GFF4163	0.49	+0.4
4,186,233	+		GFF4163	0.57	+0.1
4,186,245	+		GFF4163	0.60	+1.3
4,186,245	+		GFF4163	0.60	+0.3
4,186,245	+		GFF4163	0.60	+1.9
4,186,253	-		GFF4163	0.62	+0.4
4,186,253	-		GFF4163	0.62	-1.9
4,186,255	+		GFF4163	0.63	-0.3
4,186,255	+		GFF4163	0.63	-0.3
4,186,255	+		GFF4163	0.63	+0.5
4,186,255	+		GFF4163	0.63	-1.5
4,186,255	+		GFF4163	0.63	+0.7
4,186,255	+		GFF4163	0.63	-1.9
4,186,263	-		GFF4163	0.65	+0.9
4,186,263	-		GFF4163	0.65	-1.2
4,186,263	-		GFF4163	0.65	-2.7
4,186,263	-		GFF4163	0.65	+1.3
4,186,278	+		GFF4163	0.70	+1.1
4,186,278	+		GFF4163	0.70	+0.3
4,186,286	-		GFF4163	0.72	+0.9
4,186,286	-		GFF4163	0.72	+1.2
4,186,320	+		GFF4163	0.81	+0.1
4,186,328	-		GFF4163	0.84	-0.7
4,186,330	-		GFF4163	0.84	-0.8
4,186,345	-		GFF4163	0.89	-1.2
4,186,350	-				+0.1
4,186,352	+				-1.0
4,186,352	+				+0.1
4,186,360	-				+0.0
4,186,360	-				-1.3
4,186,360	-				-1.0
4,186,360	-				-0.4
4,186,360	-				+0.1
4,186,360	-				-0.2
4,186,360	-				-0.3
4,186,360	-				+1.2
4,186,360	-				-1.0
4,186,360	-				+0.2
4,186,368	+				-0.1
4,186,373	+				+0.1
4,186,373	+				-2.4
4,186,373	+				+0.3
4,186,373	+				+0.5
4,186,373	+				-0.6
4,186,373	+				+1.0
4,186,376	-				-0.5
4,186,381	-				+0.0
4,186,381	-				-0.6
4,186,381	-				+0.3
4,186,381	-				+0.1
4,186,381	-				+0.1
4,186,387	+				+0.4
4,186,821	-				-0.8
4,186,826	-				-2.3
4,186,826	-				-1.0
4,186,826	-				-0.9
4,186,831	+				-0.9
4,186,849	-				-0.7
4,186,851	+				+0.1
4,186,859	-				+0.2
4,186,859	-				-0.2
4,186,859	-				+0.5
4,186,890	+		GFF4165	0.12	-0.6
4,186,890	+		GFF4165	0.12	+0.2
4,186,890	+		GFF4165	0.12	-0.2
4,186,898	-		GFF4165	0.14	-1.1
4,186,898	-		GFF4165	0.14	-1.4
4,186,915	-		GFF4165	0.17	-0.5
4,186,925	-		GFF4165	0.19	-0.6
4,186,943	+		GFF4165	0.23	-1.3
4,186,946	-		GFF4165	0.24	-1.3
4,186,965	-		GFF4165	0.28	-0.7
4,186,973	+		GFF4165	0.30	+0.9
4,186,981	-		GFF4165	0.31	-0.5
4,186,981	-		GFF4165	0.31	+1.3
4,186,993	-		GFF4165	0.34	+0.2
4,187,006	+		GFF4165	0.37	-1.0
4,187,014	-		GFF4165	0.38	-0.9
4,187,030	+		GFF4165	0.42	-0.1
4,187,030	+		GFF4165	0.42	-1.0
4,187,084	+		GFF4165	0.53	+0.5
4,187,084	+		GFF4165	0.53	+0.1
4,187,104	+		GFF4165	0.58	-0.1
4,187,137	+		GFF4165	0.65	-1.9
4,187,140	-		GFF4165	0.65	+0.2
4,187,145	-		GFF4165	0.66	-1.6
4,187,145	-		GFF4165	0.66	+0.1
4,187,150	+		GFF4165	0.68	+1.1
4,187,150	+		GFF4165	0.68	+0.1
4,187,189	+		GFF4165	0.76	-1.2
4,187,189	+		GFF4165	0.76	-2.0
4,187,194	+		GFF4165	0.77	-0.5
4,187,202	-		GFF4165	0.79	-0.1
4,187,202	-		GFF4165	0.79	+1.1
4,187,202	-		GFF4165	0.79	+0.7
4,187,218	-		GFF4165	0.82	+0.4
4,187,272	+				-1.5
4,187,308	+				-1.4
4,187,327	+				-0.9
4,187,379	+				+0.4
4,187,379	+				-1.6