Strain Fitness in Sphingobium sp. HT1-2 around GFF4093

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,112,609	+				+1.0
4,112,609	+				-0.8
4,112,609	-				+0.4
4,112,616	+				+1.2
4,112,617	-				+1.0
4,112,624	-				-1.5
4,112,639	+				-1.6
4,112,653	+				-1.3
4,112,653	+				-0.3
4,112,660	+				-0.5
4,112,660	+				-0.3
4,112,660	+				+0.5
4,112,661	-				-0.5
4,112,668	-				-1.8
4,112,726	+				-0.5
4,112,734	-				-2.3
4,112,736	-				+0.5
4,112,738	+				-2.0
4,112,744	+				+0.3
4,112,752	-				+0.3
4,112,752	-				-1.1
4,112,756	-				+0.0
4,112,772	-				+0.2
4,112,779	+				-0.8
4,112,788	+				-0.8
4,112,791	-				+1.0
4,112,795	+				-0.4
4,112,796	-				-0.3
4,112,803	-				-0.0
4,112,803	-				+0.3
4,112,803	-				-0.3
4,112,820	+				-0.1
4,112,820	+				-2.1
4,112,820	+				+0.6
4,112,828	-				-0.1
4,112,828	-				+0.5
4,112,828	-				+0.3
4,112,830	+				+0.8
4,112,830	+				+0.0
4,112,830	+				-0.7
4,112,830	+				-0.6
4,112,862	+				+0.1
4,112,862	+				-0.3
4,112,862	+				-0.2
4,112,870	-				+0.0
4,112,870	-				+0.4
4,112,870	-				-1.1
4,112,870	-				+0.6
4,112,870	-				-0.0
4,112,896	+				+0.8
4,112,896	-				+0.0
4,112,904	-				+0.3
4,112,917	+				+0.1
4,112,923	+				-0.5
4,112,923	+				+0.8
4,112,947	+				-1.4
4,112,979	+				+1.0
4,112,986	+				-1.6
4,112,986	+				-0.8
4,112,987	+				-0.4
4,112,987	+				-0.9
4,112,987	+				-0.5
4,112,987	+				+0.8
4,112,987	+				-1.7
4,112,987	+				+0.0
4,112,987	+				+0.0
4,112,987	+				-0.4
4,112,987	+				+1.6
4,112,987	+				-1.5
4,112,987	+				+0.8
4,112,987	+				+0.5
4,112,987	+				-0.7
4,112,995	-				+0.3
4,112,995	-				-1.5
4,112,995	-				+0.7
4,112,995	-				-2.6
4,112,995	-				-1.3
4,112,995	-				+0.3
4,112,995	-				-0.2
4,112,995	-				-0.7
4,112,997	+				-0.5
4,112,997	+				+0.3
4,113,002	-				-0.1
4,113,005	-				-2.1
4,113,005	-				+1.0
4,113,024	-				+1.3
4,113,026	+				+0.1
4,113,026	+				+0.8
4,113,026	+				-0.2
4,113,048	-				-0.6
4,113,060	-				+0.4
4,113,067	-				-0.1
4,113,069	-				+0.5
4,113,081	-				-0.5
4,113,102	+				+0.8
4,113,118	+				+0.0
4,113,122	-				-0.5
4,113,127	-				-1.2
4,113,136	+				-0.3
4,113,149	-				-1.0
4,113,166	-				-1.3
4,113,176	+				-1.1
4,113,178	+				-0.5
4,113,184	-				+0.9
4,113,184	-				-2.7
4,113,184	-				-0.3
4,113,184	-				-2.0
4,113,184	-				-0.1
4,113,184	-				-0.6
4,113,184	-				+0.3
4,113,195	-				+1.1
4,113,199	-				-1.5
4,113,203	+				-0.0
4,113,204	-				-0.5
4,113,571	+				-0.9
4,113,571	+				-1.3
4,113,571	+				-0.5
4,113,775	+		GFF4093	0.12	-1.3
4,113,811	+		GFF4093	0.14	-2.2
4,113,811	+		GFF4093	0.14	+0.7
4,113,811	+		GFF4093	0.14	+0.9
4,113,811	+		GFF4093	0.14	+0.8
4,113,819	-		GFF4093	0.15	+0.1
4,113,829	+		GFF4093	0.15	+0.9
4,113,829	+		GFF4093	0.15	+0.0
4,113,829	+		GFF4093	0.15	+0.5
4,113,829	+		GFF4093	0.15	-1.0
4,113,829	+		GFF4093	0.15	-1.3
4,113,835	+		GFF4093	0.16	+0.9
4,113,847	-		GFF4093	0.17	-1.5
4,113,860	-		GFF4093	0.17	-1.3
4,113,880	+		GFF4093	0.19	-2.0
4,113,884	+		GFF4093	0.19	-1.3
4,113,884	+		GFF4093	0.19	-1.6
4,113,884	+		GFF4093	0.19	+0.2
4,113,890	+		GFF4093	0.19	-0.6
4,113,902	+		GFF4093	0.20	-1.7
4,113,902	+		GFF4093	0.20	+0.0
4,113,907	+		GFF4093	0.21	-1.1
4,113,917	+		GFF4093	0.21	+1.1
4,113,986	+		GFF4093	0.26	-0.3
4,114,016	+		GFF4093	0.28	-1.6
4,114,020	+		GFF4093	0.28	+0.7
4,114,020	+		GFF4093	0.28	+0.1
4,114,045	+		GFF4093	0.30	+0.2
4,114,075	+		GFF4093	0.32	+0.7
4,114,088	+		GFF4093	0.33	-0.5
4,114,136	+		GFF4093	0.36	-0.0
4,114,141	+		GFF4093	0.36	+0.8
4,114,149	+		GFF4093	0.37	+0.3
4,114,168	+		GFF4093	0.38	-1.5
4,114,168	+		GFF4093	0.38	-1.6
4,114,201	+		GFF4093	0.40	+0.1
4,114,201	+		GFF4093	0.40	-0.3
4,114,274	+		GFF4093	0.45	-1.6
4,114,282	+		GFF4093	0.46	-2.0
4,114,291	+		GFF4093	0.46	-0.2
4,114,313	+		GFF4093	0.48	+0.1
4,114,330	+		GFF4093	0.49	-0.5
4,114,330	+		GFF4093	0.49	-2.0
4,114,330	+		GFF4093	0.49	+0.0
4,114,340	+		GFF4093	0.50	-0.9
4,114,478	+		GFF4093	0.59	+1.0
4,114,484	+		GFF4093	0.59	+0.3
4,114,506	-		GFF4093	0.61	-1.9
4,114,543	+		GFF4093	0.63	+1.5
4,114,566	+		GFF4093	0.65	+0.5
4,114,597	+		GFF4093	0.67	-2.0
4,114,607	+		GFF4093	0.67	+0.3
4,114,653	+		GFF4093	0.71	-0.1
4,114,685	+		GFF4093	0.73	-1.6
4,114,740	+		GFF4093	0.76	-0.3
4,114,740	+		GFF4093	0.76	-1.3
4,114,768	+		GFF4093	0.78	+0.2
4,114,768	+		GFF4093	0.78	+1.0
4,114,936	+		GFF4093	0.89	+1.2
4,114,948	+				-1.5
4,114,956	+				-0.4
4,114,993	+				-0.1
4,115,151	+				-0.7
4,115,151	+				-2.6
4,115,164	+				+0.5
4,115,166	+				+0.2
4,115,184	+				+0.2
4,115,184	+				-0.7
4,115,184	+				-0.2
4,115,184	+				-1.0
4,115,184	+				+0.5
4,115,189	+				-0.2
4,115,189	+				+0.2
4,115,208	+				+0.1
4,115,208	+				-2.6
4,115,208	+				-0.0
4,115,213	+				+1.7
4,115,218	+				-0.8
4,115,223	+				-1.2
4,115,223	+				-0.5
4,115,223	+				-0.3
4,115,224	+				-0.7
4,115,233	+				+1.4
4,115,233	+				+0.1
4,115,241	+				-1.9
4,115,251	+				-1.5
4,115,251	+				+2.1
4,115,304	-		GFF4094	0.48	-0.3
4,115,312	+		GFF4094	0.58	+0.8
4,115,313	+		GFF4094	0.60	-2.3
4,115,320	+		GFF4094	0.69	+0.4
4,115,320	+		GFF4094	0.69	-0.2
4,115,320	+		GFF4094	0.69	-0.2
4,115,320	+		GFF4094	0.69	-0.5
4,115,320	+		GFF4094	0.69	+0.3
4,115,331	+		GFF4094	0.83	+0.5
4,115,399	+		GFF4095	0.58	-0.6
4,115,407	+		GFF4095	0.68	+0.7
4,115,446	+				+1.1
4,115,534	+				+0.6
4,115,534	+				-1.3
4,115,950	+				+0.3
4,115,984	+				+0.3
4,115,984	+				-0.6
4,115,989	+				-1.2
4,115,991	+				+0.6
4,115,992	-				-0.4
4,115,992	-				+1.2
4,115,992	-				+0.6
4,115,995	+				-0.6
4,115,996	+				+0.3
4,115,996	+				+0.2
4,115,996	+				+0.5
4,115,997	+				-0.1
4,116,002	+				-2.1
4,116,004	-				+0.4
4,116,004	-				+0.9
4,116,004	-				+0.2
4,116,004	-				-1.6
4,116,032	+				-0.7
4,116,032	+				+0.4
4,116,032	+				+0.7
4,116,039	+				-0.5
4,116,039	+				-0.5
4,116,040	-				-0.1
4,116,040	-				-1.9
4,116,046	+				+0.4
4,116,046	+				+1.0
4,116,054	-				-0.7
4,116,080	-				+0.2