Strain Fitness in Sphingobium sp. HT1-2 around GFF4083

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,093,761	+		GFF4081	0.66	+0.2
4,093,761	+		GFF4081	0.66	+0.4
4,093,769	-		GFF4081	0.67	-0.8
4,093,774	+		GFF4081	0.68	+0.0
4,093,776	-		GFF4081	0.68	-0.4
4,093,836	+		GFF4081	0.76	+0.3
4,093,836	+		GFF4081	0.76	+1.6
4,093,844	-		GFF4081	0.77	+0.0
4,093,865	+		GFF4081	0.80	-0.3
4,093,865	+		GFF4081	0.80	+0.6
4,093,868	-		GFF4081	0.81	+0.6
4,093,868	-		GFF4081	0.81	+1.8
4,093,873	-		GFF4081	0.82	+0.6
4,093,896	+		GFF4081	0.85	-0.5
4,093,904	+		GFF4081	0.86	-0.1
4,093,919	+		GFF4081	0.88	+0.4
4,093,927	-		GFF4081	0.89	-0.4
4,093,938	+				-0.0
4,093,938	+				+0.7
4,093,946	-				+0.5
4,093,946	-				+0.3
4,093,946	-				-0.3
4,093,961	-				-0.8
4,093,961	-				-1.5
4,094,004	-				+0.8
4,094,004	-				-0.6
4,094,026	+				+0.6
4,094,026	+				-0.2
4,094,056	-				-0.1
4,094,067	+				-0.1
4,094,075	-				+0.0
4,094,076	-				-0.1
4,094,082	-				-1.7
4,094,103	-		GFF4082	0.11	+0.2
4,094,118	+		GFF4082	0.14	-0.5
4,094,167	-		GFF4082	0.23	+0.1
4,094,168	+		GFF4082	0.23	+1.2
4,094,187	-		GFF4082	0.26	+0.6
4,094,249	+		GFF4082	0.38	+0.0
4,094,254	+		GFF4082	0.38	-0.2
4,094,272	-		GFF4082	0.42	-0.4
4,094,281	+		GFF4082	0.43	-0.2
4,094,282	-		GFF4082	0.44	+0.6
4,094,319	+		GFF4082	0.50	-0.6
4,094,353	+		GFF4082	0.57	-0.6
4,094,358	+		GFF4082	0.58	-0.2
4,094,358	+		GFF4082	0.58	-0.5
4,094,368	+		GFF4082	0.59	+0.3
4,094,368	+		GFF4082	0.59	-1.4
4,094,371	-		GFF4082	0.60	-1.9
4,094,376	-		GFF4082	0.61	-0.2
4,094,376	-		GFF4082	0.61	-0.6
4,094,393	-		GFF4082	0.64	-0.0
4,094,393	-		GFF4082	0.64	-1.9
4,094,397	+		GFF4082	0.65	-0.8
4,094,397	+		GFF4082	0.65	-0.8
4,094,404	+		GFF4082	0.66	-0.7
4,094,405	-		GFF4082	0.66	+0.2
4,094,405	-		GFF4082	0.66	+0.9
4,094,405	-		GFF4082	0.66	-0.6
4,094,419	-		GFF4082	0.69	+0.3
4,094,424	+		GFF4082	0.70	-1.9
4,094,432	-		GFF4082	0.71	-0.8
4,094,432	-		GFF4082	0.71	-0.3
4,094,459	+		GFF4082	0.76	-0.2
4,094,499	+		GFF4082	0.83	+0.5
4,094,612	-				-0.1
4,094,704	-				-0.9
4,094,755	+				-0.1
4,094,755	+				-1.7
4,094,760	+				-0.7
4,094,763	-				-1.3
4,094,763	-				+0.6
4,094,763	-				+0.4
4,094,849	-		GFF4083	0.12	+0.7
4,094,883	+		GFF4083	0.15	-2.2
4,094,891	-		GFF4083	0.15	-0.3
4,094,930	+		GFF4083	0.18	-0.2
4,094,930	+		GFF4083	0.18	-0.3
4,094,930	+		GFF4083	0.18	+0.3
4,094,938	-		GFF4083	0.19	-0.8
4,094,945	-		GFF4083	0.19	-0.1
4,094,949	+		GFF4083	0.20	+0.4
4,094,949	+		GFF4083	0.20	-1.2
4,094,952	-		GFF4083	0.20	+0.3
4,094,952	-		GFF4083	0.20	+0.6
4,094,985	+		GFF4083	0.22	+0.5
4,094,991	+		GFF4083	0.23	-2.6
4,094,992	-		GFF4083	0.23	-0.6
4,094,994	-		GFF4083	0.23	+0.1
4,095,010	+		GFF4083	0.24	+0.1
4,095,032	-		GFF4083	0.26	-3.0
4,095,036	+		GFF4083	0.26	+0.9
4,095,044	-		GFF4083	0.27	-0.6
4,095,063	-		GFF4083	0.28	+0.2
4,095,114	+		GFF4083	0.32	-0.3
4,095,114	+		GFF4083	0.32	+0.0
4,095,114	+		GFF4083	0.32	+0.9
4,095,114	+		GFF4083	0.32	-0.0
4,095,114	-		GFF4083	0.32	-2.5
4,095,119	+		GFF4083	0.33	-0.8
4,095,121	+		GFF4083	0.33	+0.0
4,095,122	-		GFF4083	0.33	-0.6
4,095,141	+		GFF4083	0.34	+0.0
4,095,156	+		GFF4083	0.35	-1.6
4,095,193	+		GFF4083	0.38	-0.3
4,095,196	-		GFF4083	0.38	-2.5
4,095,201	-		GFF4083	0.39	-2.3
4,095,213	+		GFF4083	0.40	-2.3
4,095,221	-		GFF4083	0.40	-0.2
4,095,221	-		GFF4083	0.40	+0.6
4,095,236	-		GFF4083	0.42	-1.1
4,095,247	+		GFF4083	0.42	-0.9
4,095,247	+		GFF4083	0.42	+0.7
4,095,247	+		GFF4083	0.42	+1.2
4,095,255	-		GFF4083	0.43	+0.8
4,095,295	+		GFF4083	0.46	-1.2
4,095,295	+		GFF4083	0.46	-1.3
4,095,295	+		GFF4083	0.46	+0.2
4,095,295	+		GFF4083	0.46	+0.6
4,095,295	+		GFF4083	0.46	-1.2
4,095,303	-		GFF4083	0.47	+0.0
4,095,303	-		GFF4083	0.47	-0.2
4,095,312	+		GFF4083	0.47	-0.8
4,095,318	+		GFF4083	0.48	+0.8
4,095,319	+		GFF4083	0.48	+1.6
4,095,344	+		GFF4083	0.50	+0.3
4,095,353	+		GFF4083	0.50	+0.8
4,095,359	-		GFF4083	0.51	+1.2
4,095,361	-		GFF4083	0.51	-0.1
4,095,369	-		GFF4083	0.52	-1.2
4,095,371	-		GFF4083	0.52	+0.7
4,095,389	+		GFF4083	0.53	-1.3
4,095,416	+		GFF4083	0.55	+1.0
4,095,444	+		GFF4083	0.57	-0.3
4,095,444	+		GFF4083	0.57	+0.2
4,095,452	-		GFF4083	0.58	-0.7
4,095,474	-		GFF4083	0.60	-1.6
4,095,474	-		GFF4083	0.60	-0.8
4,095,481	+		GFF4083	0.60	+0.5
4,095,488	+		GFF4083	0.61	-0.3
4,095,494	+		GFF4083	0.61	-1.7
4,095,496	-		GFF4083	0.61	+0.3
4,095,504	+		GFF4083	0.62	-0.5
4,095,507	-		GFF4083	0.62	+0.4
4,095,517	-		GFF4083	0.63	-0.3
4,095,519	-		GFF4083	0.63	+1.8
4,095,532	+		GFF4083	0.64	-0.1
4,095,567	+		GFF4083	0.67	-1.3
4,095,575	-		GFF4083	0.67	-0.6
4,095,575	-		GFF4083	0.67	+0.2
4,095,575	-		GFF4083	0.67	-1.7
4,095,580	-		GFF4083	0.68	+1.4
4,095,614	+		GFF4083	0.70	-2.5
4,095,620	+		GFF4083	0.71	-0.8
4,095,620	+		GFF4083	0.71	+0.2
4,095,620	+		GFF4083	0.71	-0.3
4,095,622	-		GFF4083	0.71	-1.9
4,095,622	-		GFF4083	0.71	-0.3
4,095,622	-		GFF4083	0.71	+0.2
4,095,622	-		GFF4083	0.71	-1.2
4,095,622	-		GFF4083	0.71	-0.4
4,095,624	+		GFF4083	0.71	-0.3
4,095,624	+		GFF4083	0.71	+0.0
4,095,624	+		GFF4083	0.71	-0.8
4,095,624	+		GFF4083	0.71	-2.0
4,095,624	+		GFF4083	0.71	-0.8
4,095,624	+		GFF4083	0.71	-1.3
4,095,624	+		GFF4083	0.71	-0.9
4,095,628	-		GFF4083	0.71	-0.9
4,095,632	-		GFF4083	0.72	-0.3
4,095,632	-		GFF4083	0.72	-0.0
4,095,632	-		GFF4083	0.72	+0.4
4,095,632	-		GFF4083	0.72	+0.6
4,095,647	-		GFF4083	0.73	-0.0
4,095,661	+		GFF4083	0.74	-1.3
4,095,704	+		GFF4083	0.77	-0.8
4,095,709	+		GFF4083	0.77	+0.8
4,095,712	-		GFF4083	0.78	+0.7
4,095,722	-		GFF4083	0.78	-2.0
4,095,784	+		GFF4083	0.83	+0.6
4,095,785	-		GFF4083	0.83	+0.7
4,095,792	-		GFF4083	0.84	+0.1
4,095,792	-		GFF4083	0.84	+0.4
4,095,793	-		GFF4083	0.84	-0.6
4,095,803	-		GFF4083	0.85	-0.8
4,095,809	+		GFF4083	0.85	-1.4
4,095,809	+		GFF4083	0.85	+0.2
4,095,809	+		GFF4083	0.85	-0.3
4,095,809	+		GFF4083	0.85	+1.6
4,095,809	+		GFF4083	0.85	-1.1
4,095,817	-		GFF4083	0.86	+1.0
4,095,817	-		GFF4083	0.86	-0.6
4,095,819	+		GFF4083	0.86	+0.5
4,095,858	+		GFF4083	0.89	+0.2
4,095,858	+		GFF4083	0.89	+0.6
4,095,866	-		GFF4083	0.89	+0.2
4,095,866	-		GFF4083	0.89	-0.5
4,095,873	+		GFF4083	0.90	-0.0
4,095,881	-				-0.6
4,095,886	-				+0.1
4,095,910	-				-0.5
4,095,911	-				+1.0
4,095,942	+				-0.8
4,095,948	+				-0.7
4,095,956	-				+0.4
4,095,982	-				+0.1
4,095,982	-				-0.6
4,096,017	-				-1.0
4,096,091	+				+0.2
4,096,091	+				+0.9
4,096,091	+				-2.5
4,096,101	+				-1.2
4,096,111	+				-1.0
4,096,129	-		GFF4084	0.11	+1.2
4,096,162	+		GFF4084	0.16	-0.3
4,096,170	-		GFF4084	0.17	+0.5
4,096,179	+		GFF4084	0.19	+0.5
4,096,180	+		GFF4084	0.19	-0.6
4,096,188	+		GFF4084	0.20	-0.4
4,096,215	+		GFF4084	0.24	-0.1
4,096,233	+		GFF4084	0.27	-0.4
4,096,233	+		GFF4084	0.27	-1.5
4,096,233	+		GFF4084	0.27	+1.2
4,096,241	-		GFF4084	0.28	-0.3
4,096,307	+		GFF4084	0.38	+1.4
4,096,309	+		GFF4084	0.39	-0.8
4,096,358	+		GFF4084	0.46	-1.1
4,096,371	-		GFF4084	0.48	-0.4
4,096,397	+		GFF4084	0.52	+1.7
4,096,414	-		GFF4084	0.55	-1.1
4,096,414	-		GFF4084	0.55	-0.9
4,096,420	+		GFF4084	0.56	+1.2
4,096,420	+		GFF4084	0.56	-0.8
4,096,428	-		GFF4084	0.57	+1.0
4,096,446	+		GFF4084	0.60	+0.1
4,096,446	+		GFF4084	0.60	+1.0
4,096,448	+		GFF4084	0.60	+0.2
4,096,448	+		GFF4084	0.60	+0.2
4,096,455	+		GFF4084	0.61	+0.2
4,096,456	-		GFF4084	0.62	+0.2
4,096,461	+		GFF4084	0.62	-0.5
4,096,461	+		GFF4084	0.62	-1.0
4,096,511	-		GFF4084	0.70	-0.8
4,096,538	-		GFF4084	0.74	-0.7
4,096,541	-		GFF4084	0.75	+1.0
4,096,551	+		GFF4084	0.76	-0.1
4,096,558	+		GFF4084	0.77	+0.7
4,096,558	+		GFF4084	0.77	-0.4
4,096,566	-		GFF4084	0.79	+0.1
4,096,566	-		GFF4084	0.79	+0.1
4,096,566	-		GFF4084	0.79	+0.0
4,096,567	+		GFF4084	0.79	+0.3
4,096,576	-		GFF4084	0.80	-1.3
4,096,576	-		GFF4084	0.80	-1.1
4,096,599	-		GFF4084	0.84	-0.3
4,096,603	-		GFF4084	0.84	-2.2
4,096,641	-				-0.1
4,096,665	+				+0.3
4,096,674	-				+0.7
4,096,684	+				-2.3
4,096,684	+				-0.5
4,096,804	+				-1.2
4,096,814	+				-0.2
4,096,822	-				+0.5
4,096,822	-				-1.2
4,096,833	+				+0.3
4,096,841	-				+1.3
4,096,851	+				-0.0
4,096,942	+		GFF4085	0.15	-1.1
4,096,942	+		GFF4085	0.15	-0.5
4,096,959	+		GFF4085	0.16	+0.0
4,096,984	-		GFF4085	0.18	-0.7