Strain Fitness in Sphingobium sp. HT1-2 around GFF403

Experiment: EMM_noCarbon with Sucrose and Putrescine

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF401 and GFF402 are separated by 49 nucleotidesGFF402 and GFF403 are separated by 178 nucleotidesGFF403 and GFF404 are separated by 146 nucleotidesGFF404 and GFF405 are separated by 32 nucleotides GFF401 - Peptide-methionine (S)-S-oxide reductase MsrA (EC 1.8.4.11), at 389,883 to 390,494 GFF401 GFF402 - hypothetical protein, at 390,544 to 390,837 GFF402 GFF403 - Aspartate aminotransferase (EC 2.6.1.1), at 391,016 to 392,257 GFF403 GFF404 - Aminodeoxychorismate lyase (EC 4.1.3.38), at 392,404 to 393,027 GFF404 GFF405 - Para-aminobenzoate synthase, aminase component (EC 2.6.1.85), at 393,060 to 394,238 GFF405 Position (kb) 391 392 393Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 390.025 kb on - strand, within GFF401at 390.026 kb on - strand, within GFF401at 390.030 kb on + strand, within GFF401at 390.034 kb on + strand, within GFF401at 390.068 kb on + strand, within GFF401at 390.086 kb on + strand, within GFF401at 390.094 kb on - strand, within GFF401at 390.094 kb on - strand, within GFF401at 390.099 kb on - strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.106 kb on + strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.114 kb on - strand, within GFF401at 390.116 kb on + strand, within GFF401at 390.119 kb on - strand, within GFF401at 390.135 kb on - strand, within GFF401at 390.216 kb on + strand, within GFF401at 390.224 kb on - strand, within GFF401at 390.248 kb on + strand, within GFF401at 390.248 kb on + strand, within GFF401at 390.248 kb on + strand, within GFF401at 390.266 kb on - strand, within GFF401at 390.389 kb on + strand, within GFF401at 390.497 kb on - strandat 390.518 kb on + strandat 390.525 kb on + strandat 390.595 kb on + strand, within GFF402at 390.598 kb on - strand, within GFF402at 390.598 kb on - strand, within GFF402at 390.598 kb on - strand, within GFF402at 390.598 kb on - strand, within GFF402at 390.603 kb on - strand, within GFF402at 390.756 kb on - strand, within GFF402at 390.760 kb on + strand, within GFF402at 390.768 kb on - strand, within GFF402at 390.771 kb on + strand, within GFF402at 391.029 kb on + strandat 391.120 kb on - strandat 391.125 kb on + strandat 391.142 kb on - strand, within GFF403at 391.279 kb on - strand, within GFF403at 391.287 kb on + strand, within GFF403at 391.302 kb on - strand, within GFF403at 391.332 kb on + strand, within GFF403at 391.399 kb on + strand, within GFF403at 391.453 kb on + strand, within GFF403at 391.456 kb on - strand, within GFF403at 391.459 kb on - strand, within GFF403at 391.501 kb on + strand, within GFF403at 391.502 kb on - strand, within GFF403at 391.511 kb on + strand, within GFF403at 391.511 kb on + strand, within GFF403at 391.511 kb on + strand, within GFF403at 391.519 kb on + strand, within GFF403at 391.540 kb on + strand, within GFF403at 391.545 kb on + strand, within GFF403at 391.545 kb on + strand, within GFF403at 391.545 kb on + strand, within GFF403at 391.545 kb on + strand, within GFF403at 391.545 kb on + strand, within GFF403at 391.550 kb on + strand, within GFF403at 391.553 kb on - strand, within GFF403at 391.553 kb on - strand, within GFF403at 391.553 kb on - strand, within GFF403at 391.589 kb on - strand, within GFF403at 391.592 kb on - strand, within GFF403at 391.623 kb on - strand, within GFF403at 391.629 kb on + strand, within GFF403at 391.637 kb on + strand, within GFF403at 391.645 kb on - strand, within GFF403at 391.652 kb on - strand, within GFF403at 391.652 kb on - strand, within GFF403at 391.656 kb on + strand, within GFF403at 391.657 kb on - strand, within GFF403at 391.686 kb on + strand, within GFF403at 391.723 kb on - strand, within GFF403at 391.740 kb on - strand, within GFF403at 391.748 kb on + strand, within GFF403at 391.761 kb on - strand, within GFF403at 391.761 kb on - strand, within GFF403at 391.761 kb on - strand, within GFF403at 391.761 kb on - strand, within GFF403at 391.766 kb on - strand, within GFF403at 391.789 kb on - strand, within GFF403at 391.804 kb on - strand, within GFF403at 391.820 kb on + strand, within GFF403at 391.836 kb on - strand, within GFF403at 391.836 kb on - strand, within GFF403at 391.867 kb on + strand, within GFF403at 391.875 kb on - strand, within GFF403at 391.887 kb on + strand, within GFF403at 391.895 kb on - strand, within GFF403at 391.899 kb on + strand, within GFF403at 391.899 kb on + strand, within GFF403at 391.899 kb on + strand, within GFF403at 391.917 kb on - strand, within GFF403at 391.944 kb on - strand, within GFF403at 391.995 kb on + strand, within GFF403at 392.113 kb on + strand, within GFF403at 392.121 kb on - strand, within GFF403at 392.121 kb on - strand, within GFF403at 392.123 kb on + strand, within GFF403at 392.170 kb on + strandat 392.181 kb on + strandat 392.331 kb on + strandat 392.375 kb on + strandat 392.428 kb on - strandat 392.490 kb on - strand, within GFF404at 392.501 kb on - strand, within GFF404at 392.501 kb on - strand, within GFF404at 392.509 kb on + strand, within GFF404at 392.552 kb on - strand, within GFF404at 392.586 kb on - strand, within GFF404at 392.595 kb on - strand, within GFF404at 392.606 kb on - strand, within GFF404at 392.618 kb on + strand, within GFF404at 392.618 kb on + strand, within GFF404at 392.619 kb on + strand, within GFF404at 392.628 kb on + strand, within GFF404at 392.636 kb on + strand, within GFF404at 392.644 kb on - strand, within GFF404at 392.644 kb on - strand, within GFF404at 392.646 kb on + strand, within GFF404at 392.646 kb on + strand, within GFF404at 392.646 kb on + strand, within GFF404at 392.654 kb on - strand, within GFF404at 392.654 kb on - strand, within GFF404at 392.662 kb on + strand, within GFF404at 392.662 kb on + strand, within GFF404at 392.662 kb on + strand, within GFF404at 392.665 kb on + strand, within GFF404at 392.670 kb on - strand, within GFF404at 392.696 kb on + strand, within GFF404at 392.699 kb on + strand, within GFF404at 392.707 kb on - strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.747 kb on + strand, within GFF404at 392.748 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.755 kb on - strand, within GFF404at 392.765 kb on + strand, within GFF404at 392.766 kb on - strand, within GFF404at 392.774 kb on - strand, within GFF404at 392.776 kb on + strand, within GFF404at 392.784 kb on - strand, within GFF404at 392.793 kb on + strand, within GFF404at 392.801 kb on - strand, within GFF404at 392.801 kb on - strand, within GFF404at 392.853 kb on + strand, within GFF404at 392.853 kb on + strand, within GFF404at 392.861 kb on - strand, within GFF404at 392.867 kb on - strand, within GFF404at 392.869 kb on - strand, within GFF404at 392.904 kb on - strand, within GFF404at 392.924 kb on + strand, within GFF404at 392.926 kb on + strand, within GFF404at 392.926 kb on + strand, within GFF404at 392.935 kb on - strand, within GFF404at 392.974 kb on - strandat 392.974 kb on - strandat 392.976 kb on + strandat 392.990 kb on + strandat 392.998 kb on - strandat 393.001 kb on + strandat 393.024 kb on + strandat 393.025 kb on + strandat 393.025 kb on - strandat 393.033 kb on - strandat 393.033 kb on - strandat 393.033 kb on - strandat 393.035 kb on + strandat 393.035 kb on + strandat 393.043 kb on - strandat 393.043 kb on - strandat 393.064 kb on - strandat 393.078 kb on - strandat 393.086 kb on + strandat 393.229 kb on + strand, within GFF405at 393.232 kb on - strand, within GFF405at 393.240 kb on + strand, within GFF405at 393.242 kb on - strand, within GFF405at 393.247 kb on + strand, within GFF405at 393.250 kb on - strand, within GFF405at 393.254 kb on - strand, within GFF405

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Per-strain Table

Position Strand Gene LocusTag Fraction EMM_noCarbon with Sucrose and Putrescine
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390,025 - GFF401 0.23 -0.3
390,026 - GFF401 0.23 +0.4
390,030 + GFF401 0.24 -0.5
390,034 + GFF401 0.25 +1.1
390,068 + GFF401 0.30 +1.1
390,086 + GFF401 0.33 +1.9
390,094 - GFF401 0.34 +0.7
390,094 - GFF401 0.34 +1.4
390,099 - GFF401 0.35 -0.8
390,106 + GFF401 0.36 -0.6
390,106 + GFF401 0.36 -0.5
390,106 + GFF401 0.36 +0.8
390,106 + GFF401 0.36 +1.5
390,106 + GFF401 0.36 -0.5
390,106 + GFF401 0.36 -0.3
390,106 + GFF401 0.36 +0.1
390,106 + GFF401 0.36 +0.0
390,106 + GFF401 0.36 -1.5
390,106 + GFF401 0.36 +1.6
390,106 + GFF401 0.36 +0.3
390,106 + GFF401 0.36 +0.3
390,114 - GFF401 0.38 -1.2
390,114 - GFF401 0.38 +0.2
390,114 - GFF401 0.38 +0.6
390,114 - GFF401 0.38 +0.2
390,114 - GFF401 0.38 -0.7
390,114 - GFF401 0.38 -0.7
390,114 - GFF401 0.38 -0.8
390,114 - GFF401 0.38 -1.6
390,114 - GFF401 0.38 -1.2
390,114 - GFF401 0.38 +0.6
390,114 - GFF401 0.38 -0.6
390,114 - GFF401 0.38 +0.5
390,114 - GFF401 0.38 -2.2
390,114 - GFF401 0.38 +0.2
390,116 + GFF401 0.38 +0.6
390,119 - GFF401 0.39 +0.1
390,135 - GFF401 0.41 -0.6
390,216 + GFF401 0.54 -1.7
390,224 - GFF401 0.56 -0.7
390,248 + GFF401 0.60 -0.5
390,248 + GFF401 0.60 +0.0
390,248 + GFF401 0.60 +0.6
390,266 - GFF401 0.63 -0.8
390,389 + GFF401 0.83 +0.2
390,497 - +1.3
390,518 + -1.4
390,525 + +0.7
390,595 + GFF402 0.17 +0.5
390,598 - GFF402 0.18 -1.3
390,598 - GFF402 0.18 +0.1
390,598 - GFF402 0.18 +0.7
390,598 - GFF402 0.18 +0.6
390,603 - GFF402 0.20 +0.7
390,756 - GFF402 0.72 -0.8
390,760 + GFF402 0.73 -0.8
390,768 - GFF402 0.76 -0.4
390,771 + GFF402 0.77 -0.7
391,029 + +0.0
391,120 - -2.5
391,125 + -2.2
391,142 - GFF403 0.10 -0.8
391,279 - GFF403 0.21 -1.6
391,287 + GFF403 0.22 -1.6
391,302 - GFF403 0.23 -0.3
391,332 + GFF403 0.25 -3.3
391,399 + GFF403 0.31 -2.1
391,453 + GFF403 0.35 -1.1
391,456 - GFF403 0.35 -1.7
391,459 - GFF403 0.36 -0.8
391,501 + GFF403 0.39 -1.9
391,502 - GFF403 0.39 -2.3
391,511 + GFF403 0.40 -2.7
391,511 + GFF403 0.40 -1.3
391,511 + GFF403 0.40 -0.3
391,519 + GFF403 0.40 -3.0
391,540 + GFF403 0.42 -2.1
391,545 + GFF403 0.43 -1.4
391,545 + GFF403 0.43 -2.9
391,545 + GFF403 0.43 -1.5
391,545 + GFF403 0.43 -0.3
391,545 + GFF403 0.43 -2.8
391,550 + GFF403 0.43 -0.5
391,553 - GFF403 0.43 -1.1
391,553 - GFF403 0.43 -1.6
391,553 - GFF403 0.43 -1.9
391,589 - GFF403 0.46 -2.3
391,592 - GFF403 0.46 -1.1
391,623 - GFF403 0.49 -2.4
391,629 + GFF403 0.49 -0.7
391,637 + GFF403 0.50 -2.3
391,645 - GFF403 0.51 -0.1
391,652 - GFF403 0.51 -3.2
391,652 - GFF403 0.51 -3.1
391,656 + GFF403 0.52 -1.0
391,657 - GFF403 0.52 -2.9
391,686 + GFF403 0.54 -1.3
391,723 - GFF403 0.57 -1.8
391,740 - GFF403 0.58 -2.5
391,748 + GFF403 0.59 -3.2
391,761 - GFF403 0.60 -1.3
391,761 - GFF403 0.60 -1.6
391,761 - GFF403 0.60 -1.0
391,761 - GFF403 0.60 -0.1
391,766 - GFF403 0.60 -2.6
391,789 - GFF403 0.62 -0.3
391,804 - GFF403 0.63 -2.3
391,820 + GFF403 0.65 -0.3
391,836 - GFF403 0.66 -1.5
391,836 - GFF403 0.66 -0.8
391,867 + GFF403 0.69 -2.6
391,875 - GFF403 0.69 -1.4
391,887 + GFF403 0.70 -2.1
391,895 - GFF403 0.71 -0.3
391,899 + GFF403 0.71 -1.8
391,899 + GFF403 0.71 -3.4
391,899 + GFF403 0.71 -3.1
391,917 - GFF403 0.73 -0.7
391,944 - GFF403 0.75 -0.8
391,995 + GFF403 0.79 -1.8
392,113 + GFF403 0.88 -2.7
392,121 - GFF403 0.89 -0.5
392,121 - GFF403 0.89 -3.4
392,123 + GFF403 0.89 -2.5
392,170 + +0.2
392,181 + -1.6
392,331 + -0.2
392,375 + +0.9
392,428 - +0.0
392,490 - GFF404 0.14 +2.1
392,501 - GFF404 0.16 +1.4
392,501 - GFF404 0.16 +1.3
392,509 + GFF404 0.17 +0.8
392,552 - GFF404 0.24 +0.1
392,586 - GFF404 0.29 +2.3
392,595 - GFF404 0.31 +0.8
392,606 - GFF404 0.32 +0.5
392,618 + GFF404 0.34 +0.0
392,618 + GFF404 0.34 +0.9
392,619 + GFF404 0.34 +1.1
392,628 + GFF404 0.36 +1.3
392,636 + GFF404 0.37 -0.0
392,644 - GFF404 0.38 +0.0
392,644 - GFF404 0.38 +0.5
392,646 + GFF404 0.39 +1.5
392,646 + GFF404 0.39 -1.2
392,646 + GFF404 0.39 +2.3
392,654 - GFF404 0.40 +0.8
392,654 - GFF404 0.40 +0.5
392,662 + GFF404 0.41 +0.0
392,662 + GFF404 0.41 -0.1
392,662 + GFF404 0.41 +0.7
392,665 + GFF404 0.42 -0.2
392,670 - GFF404 0.43 +0.8
392,696 + GFF404 0.47 +1.0
392,699 + GFF404 0.47 +0.9
392,707 - GFF404 0.49 +0.3
392,747 + GFF404 0.55 +0.3
392,747 + GFF404 0.55 +0.5
392,747 + GFF404 0.55 +1.1
392,747 + GFF404 0.55 +0.7
392,747 + GFF404 0.55 +1.9
392,747 + GFF404 0.55 +1.5
392,747 + GFF404 0.55 -0.3
392,747 + GFF404 0.55 +0.3
392,747 + GFF404 0.55 +0.3
392,747 + GFF404 0.55 -0.1
392,747 + GFF404 0.55 +0.7
392,748 - GFF404 0.55 +0.6
392,755 - GFF404 0.56 +1.0
392,755 - GFF404 0.56 +1.2
392,755 - GFF404 0.56 +2.3
392,755 - GFF404 0.56 -0.5
392,755 - GFF404 0.56 +1.3
392,755 - GFF404 0.56 +0.4
392,755 - GFF404 0.56 +0.7
392,755 - GFF404 0.56 +0.3
392,755 - GFF404 0.56 +1.6
392,755 - GFF404 0.56 +0.8
392,765 + GFF404 0.58 +0.2
392,766 - GFF404 0.58 -1.5
392,774 - GFF404 0.59 +0.7
392,776 + GFF404 0.60 +0.3
392,784 - GFF404 0.61 +1.7
392,793 + GFF404 0.62 +1.2
392,801 - GFF404 0.64 +1.5
392,801 - GFF404 0.64 +0.2
392,853 + GFF404 0.72 +0.8
392,853 + GFF404 0.72 +0.2
392,861 - GFF404 0.73 -0.4
392,867 - GFF404 0.74 +0.5
392,869 - GFF404 0.75 -0.3
392,904 - GFF404 0.80 +1.5
392,924 + GFF404 0.83 +0.4
392,926 + GFF404 0.84 +1.5
392,926 + GFF404 0.84 +0.3
392,935 - GFF404 0.85 +0.9
392,974 - +1.0
392,974 - -0.3
392,976 + +1.7
392,990 + +0.8
392,998 - +1.0
393,001 + +0.8
393,024 + +0.6
393,025 + +1.3
393,025 - -0.9
393,033 - +1.8
393,033 - -0.3
393,033 - -1.4
393,035 + +0.1
393,035 + +0.5
393,043 - +0.8
393,043 - -0.9
393,064 - +1.2
393,078 - -0.8
393,086 + +1.3
393,229 + GFF405 0.14 +0.3
393,232 - GFF405 0.15 -1.5
393,240 + GFF405 0.15 -0.6
393,242 - GFF405 0.15 +0.7
393,247 + GFF405 0.16 +0.4
393,250 - GFF405 0.16 +0.3
393,254 - GFF405 0.16 +0.7

Or see this region's nucleotide sequence