Strain Fitness in Sphingobium sp. HT1-2 around GFF4011

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
4,038,299	+		GFF4009	0.45	-0.3
4,038,302	-		GFF4009	0.45	+0.4
4,038,307	-		GFF4009	0.46	+0.8
4,038,313	+		GFF4009	0.47	-0.8
4,038,320	+		GFF4009	0.48	-1.4
4,038,321	-		GFF4009	0.48	+1.7
4,038,321	-		GFF4009	0.48	-1.7
4,038,328	-		GFF4009	0.49	-1.8
4,038,337	+		GFF4009	0.51	-2.2
4,038,362	+		GFF4009	0.55	-0.2
4,038,370	-		GFF4009	0.56	-0.4
4,038,370	-		GFF4009	0.56	+0.3
4,038,372	-		GFF4009	0.57	-0.3
4,038,381	+		GFF4009	0.58	-1.0
4,038,381	+		GFF4009	0.58	-2.1
4,038,381	+		GFF4009	0.58	-0.4
4,038,394	-		GFF4009	0.60	-2.0
4,038,420	-		GFF4009	0.65	+0.4
4,038,425	-		GFF4009	0.65	+0.5
4,038,427	+		GFF4009	0.66	-1.7
4,038,427	+		GFF4009	0.66	-0.6
4,038,427	+		GFF4009	0.66	-0.1
4,038,435	-		GFF4009	0.67	-0.2
4,038,442	+		GFF4009	0.68	+0.4
4,038,477	+		GFF4009	0.74	-0.5
4,038,477	+		GFF4009	0.74	-0.7
4,038,477	+		GFF4009	0.74	+0.9
4,038,477	+		GFF4009	0.74	-0.8
4,038,477	+		GFF4009	0.74	+0.7
4,038,477	+		GFF4009	0.74	+0.3
4,038,478	-		GFF4009	0.74	-1.1
4,038,478	-		GFF4009	0.74	-0.8
4,038,478	-		GFF4009	0.74	-0.0
4,038,485	+		GFF4009	0.75	-1.9
4,038,485	+		GFF4009	0.75	+1.1
4,038,485	-		GFF4009	0.75	-1.3
4,038,485	-		GFF4009	0.75	-0.3
4,038,500	+		GFF4009	0.78	+0.6
4,038,503	+		GFF4009	0.78	-0.1
4,038,507	-		GFF4009	0.79	+1.4
4,038,508	-		GFF4009	0.79	-0.5
4,038,508	-		GFF4009	0.79	+1.1
4,038,525	+		GFF4009	0.82	-1.5
4,038,525	+		GFF4009	0.82	-0.5
4,038,525	+		GFF4009	0.82	-0.4
4,038,525	+		GFF4009	0.82	+0.5
4,038,526	+		GFF4009	0.82	-0.8
4,038,528	-		GFF4009	0.82	+0.7
4,038,528	-		GFF4009	0.82	+0.7
4,038,533	-		GFF4009	0.83	-0.4
4,038,533	-		GFF4009	0.83	-0.3
4,038,534	-		GFF4009	0.83	-1.4
4,038,536	+		GFF4009	0.84	-0.5
4,038,536	+		GFF4009	0.84	-1.4
4,038,536	+		GFF4009	0.84	-0.8
4,038,536	+		GFF4009	0.84	+0.1
4,038,542	-		GFF4009	0.85	+0.6
4,038,544	-		GFF4009	0.85	-1.6
4,038,544	-		GFF4009	0.85	+1.1
4,038,544	-		GFF4009	0.85	-1.5
4,038,544	-		GFF4009	0.85	+0.1
4,038,583	-				+0.1
4,038,596	-				-2.0
4,038,597	+				-0.6
4,038,597	+				+1.0
4,038,597	+				+0.8
4,038,597	+				-0.8
4,038,597	+				-0.8
4,038,597	+				+0.9
4,038,597	+				-0.5
4,038,597	+				-0.9
4,038,597	+				-0.6
4,038,597	+				-0.2
4,038,605	+				+0.9
4,038,605	-				-1.0
4,038,605	-				+0.2
4,038,605	-				+0.0
4,038,605	-				-1.5
4,038,632	-				-0.9
4,038,635	+				+0.4
4,038,648	-				-2.0
4,038,658	+				-0.7
4,038,658	+				-0.3
4,038,663	+				-0.0
4,038,674	+				+0.0
4,038,678	-				-0.8
4,038,685	+		GFF4010	0.11	-2.3
4,038,688	+		GFF4010	0.11	+0.5
4,038,689	-		GFF4010	0.11	-0.4
4,038,703	-		GFF4010	0.13	-0.2
4,038,726	+		GFF4010	0.17	-0.9
4,038,734	-		GFF4010	0.18	-1.0
4,038,736	+		GFF4010	0.18	-1.2
4,038,736	+		GFF4010	0.18	-2.2
4,038,743	+		GFF4010	0.19	-0.8
4,038,744	-		GFF4010	0.19	-1.5
4,038,756	-		GFF4010	0.21	+0.6
4,038,756	-		GFF4010	0.21	+0.7
4,038,762	-		GFF4010	0.22	-0.2
4,038,769	+		GFF4010	0.23	-0.9
4,038,843	+		GFF4010	0.34	+1.6
4,038,867	-		GFF4010	0.37	+1.6
4,038,878	-		GFF4010	0.39	-0.8
4,038,890	+		GFF4010	0.41	+0.1
4,038,890	+		GFF4010	0.41	+0.6
4,038,893	-		GFF4010	0.41	-0.6
4,038,909	-		GFF4010	0.44	+0.4
4,038,933	-		GFF4010	0.47	-1.4
4,038,937	+		GFF4010	0.48	-1.7
4,038,937	+		GFF4010	0.48	+0.4
4,038,945	-		GFF4010	0.49	+0.2
4,038,949	+		GFF4010	0.49	+0.4
4,038,954	+		GFF4010	0.50	-2.1
4,038,962	-		GFF4010	0.51	-0.5
4,038,963	-		GFF4010	0.52	-0.2
4,038,973	-		GFF4010	0.53	-1.3
4,038,983	+		GFF4010	0.54	-1.6
4,038,985	-		GFF4010	0.55	-0.7
4,038,990	-		GFF4010	0.56	+0.7
4,038,999	+		GFF4010	0.57	-0.2
4,039,007	+		GFF4010	0.58	-0.6
4,039,017	+		GFF4010	0.59	-1.1
4,039,025	-		GFF4010	0.61	+0.6
4,039,028	+		GFF4010	0.61	+0.3
4,039,036	+		GFF4010	0.62	-0.8
4,039,046	-		GFF4010	0.64	-0.4
4,039,068	+		GFF4010	0.67	-1.8
4,039,074	+		GFF4010	0.68	-0.8
4,039,092	-		GFF4010	0.70	-0.8
4,039,111	+		GFF4010	0.73	-0.0
4,039,113	+		GFF4010	0.74	-0.3
4,039,113	+		GFF4010	0.74	-0.2
4,039,118	+		GFF4010	0.74	-2.9
4,039,119	-		GFF4010	0.74	+0.2
4,039,119	-		GFF4010	0.74	-2.0
4,039,121	+		GFF4010	0.75	+0.2
4,039,126	-		GFF4010	0.75	-1.3
4,039,129	-		GFF4010	0.76	-1.5
4,039,131	-		GFF4010	0.76	-2.2
4,039,182	+		GFF4010	0.84	-1.2
4,039,182	+		GFF4010	0.84	-0.1
4,039,182	+		GFF4010	0.84	-1.6
4,039,182	+		GFF4010	0.84	-0.1
4,039,182	+		GFF4010	0.84	-1.2
4,039,182	+		GFF4010	0.84	-0.1
4,039,182	+		GFF4010	0.84	-0.8
4,039,185	-		GFF4010	0.84	-0.0
4,039,190	-		GFF4010	0.85	+0.4
4,039,216	-		GFF4010	0.89	+0.6
4,039,229	+				-0.2
4,039,237	-				+0.7
4,039,248	-				-0.0
4,039,286	+				-0.9
4,039,286	+				+1.1
4,039,286	+				-0.8
4,039,286	+				+0.7
4,039,286	+				-0.2
4,039,286	+				-1.3
4,039,294	-				-0.6
4,039,294	-				-0.1
4,039,294	-				-0.5
4,039,294	-				-1.8
4,039,294	-				+1.2
4,039,304	+				+0.0
4,039,345	-				-1.7
4,039,358	+				-2.1
4,039,359	-				-0.3
4,039,366	-				-0.8
4,039,368	+				-0.1
4,039,368	+				-1.5
4,039,368	+				+0.1
4,039,368	+				-0.5
4,039,368	+				+0.0
4,039,368	+				-0.4
4,039,368	+				+0.0
4,039,368	+				-1.5
4,039,368	+				-0.1
4,039,368	+				+0.0
4,039,369	+				+0.4
4,039,376	-		GFF4011	0.10	-0.6
4,039,376	-		GFF4011	0.10	+0.5
4,039,376	-		GFF4011	0.10	+0.8
4,039,376	-		GFF4011	0.10	+0.0
4,039,376	-		GFF4011	0.10	+0.7
4,039,376	-		GFF4011	0.10	-1.7
4,039,376	-		GFF4011	0.10	-2.3
4,039,376	-		GFF4011	0.10	+0.7
4,039,376	-		GFF4011	0.10	+0.1
4,039,376	-		GFF4011	0.10	+1.1
4,039,376	-		GFF4011	0.10	-0.0
4,039,376	-		GFF4011	0.10	-0.7
4,039,376	-		GFF4011	0.10	+0.3
4,039,376	-		GFF4011	0.10	+0.2
4,039,377	-		GFF4011	0.10	+0.5
4,039,391	+		GFF4011	0.12	-0.2
4,039,391	+		GFF4011	0.12	+0.7
4,039,394	-		GFF4011	0.12	-1.2
4,039,396	+		GFF4011	0.13	+0.9
4,039,396	+		GFF4011	0.13	-2.3
4,039,399	-		GFF4011	0.13	-0.3
4,039,399	-		GFF4011	0.13	-0.7
4,039,399	-		GFF4011	0.13	+0.5
4,039,399	-		GFF4011	0.13	-0.6
4,039,399	-		GFF4011	0.13	+1.7
4,039,442	+		GFF4011	0.19	+0.6
4,039,447	+		GFF4011	0.19	-1.5
4,039,455	-		GFF4011	0.20	-1.2
4,039,457	+		GFF4011	0.20	+1.3
4,039,463	+		GFF4011	0.21	+0.2
4,039,494	-		GFF4011	0.25	-0.1
4,039,512	+		GFF4011	0.27	-0.3
4,039,515	-		GFF4011	0.28	-0.3
4,039,515	-		GFF4011	0.28	+0.4
4,039,540	-		GFF4011	0.31	-1.4
4,039,541	+		GFF4011	0.31	+0.7
4,039,541	+		GFF4011	0.31	-1.1
4,039,541	+		GFF4011	0.31	-0.0
4,039,541	+		GFF4011	0.31	+1.0
4,039,541	+		GFF4011	0.31	-0.8
4,039,541	+		GFF4011	0.31	-0.5
4,039,541	+		GFF4011	0.31	-2.1
4,039,541	+		GFF4011	0.31	+0.4
4,039,549	-		GFF4011	0.32	+0.5
4,039,549	-		GFF4011	0.32	-0.3
4,039,549	-		GFF4011	0.32	-0.9
4,039,549	-		GFF4011	0.32	-0.2
4,039,549	-		GFF4011	0.32	+0.9
4,039,549	-		GFF4011	0.32	-0.1
4,039,549	-		GFF4011	0.32	-0.5
4,039,549	-		GFF4011	0.32	+0.4
4,039,549	-		GFF4011	0.32	+0.2
4,039,549	-		GFF4011	0.32	+1.2
4,039,549	-		GFF4011	0.32	-0.8
4,039,551	+		GFF4011	0.32	+0.0
4,039,565	+		GFF4011	0.34	-1.6
4,039,567	+		GFF4011	0.34	-0.6
4,039,567	+		GFF4011	0.34	-1.5
4,039,567	+		GFF4011	0.34	-0.4
4,039,567	+		GFF4011	0.34	-0.3
4,039,567	+		GFF4011	0.34	-0.5
4,039,567	+		GFF4011	0.34	-2.0
4,039,567	+		GFF4011	0.34	-1.3
4,039,567	+		GFF4011	0.34	-0.1
4,039,570	-		GFF4011	0.35	+0.2
4,039,572	+		GFF4011	0.35	-1.0
4,039,575	-		GFF4011	0.36	-0.3
4,039,575	-		GFF4011	0.36	-2.4
4,039,577	+		GFF4011	0.36	-1.1
4,039,577	+		GFF4011	0.36	-1.6
4,039,579	-		GFF4011	0.36	-1.8
4,039,580	-		GFF4011	0.36	-0.3
4,039,590	+		GFF4011	0.37	-0.3
4,039,632	-		GFF4011	0.43	-0.4
4,039,633	+		GFF4011	0.43	+1.4
4,039,641	-		GFF4011	0.44	-0.7
4,039,655	+		GFF4011	0.46	-1.1
4,039,655	+		GFF4011	0.46	+0.2
4,039,655	+		GFF4011	0.46	-1.2
4,039,655	+		GFF4011	0.46	-0.5
4,039,655	+		GFF4011	0.46	-1.7
4,039,655	+		GFF4011	0.46	+0.4
4,039,655	+		GFF4011	0.46	-1.7
4,039,655	+		GFF4011	0.46	-0.9
4,039,655	+		GFF4011	0.46	+0.6
4,039,655	+		GFF4011	0.46	-0.3
4,039,655	+		GFF4011	0.46	-0.7
4,039,663	-		GFF4011	0.47	-0.2
4,039,663	-		GFF4011	0.47	-0.4
4,039,663	-		GFF4011	0.47	+1.0
4,039,663	-		GFF4011	0.47	-0.3
4,039,663	-		GFF4011	0.47	+1.3
4,039,663	-		GFF4011	0.47	+0.2
4,039,663	-		GFF4011	0.47	-1.2
4,039,663	-		GFF4011	0.47	-0.3
4,039,663	-		GFF4011	0.47	-1.8
4,039,663	-		GFF4011	0.47	-0.1
4,039,663	-		GFF4011	0.47	-0.3
4,039,663	-		GFF4011	0.47	-0.1
4,039,663	-		GFF4011	0.47	+0.6
4,039,663	-		GFF4011	0.47	+0.1
4,039,663	-		GFF4011	0.47	-0.3
4,039,663	-		GFF4011	0.47	+0.9
4,039,663	-		GFF4011	0.47	-1.2
4,039,663	-		GFF4011	0.47	-0.4
4,039,663	-		GFF4011	0.47	+1.1
4,039,663	-		GFF4011	0.47	+1.5
4,039,663	-		GFF4011	0.47	+1.5
4,039,663	-		GFF4011	0.47	+0.7
4,039,663	-		GFF4011	0.47	+1.4
4,039,664	-		GFF4011	0.47	-1.1
4,039,670	+		GFF4011	0.48	+0.3
4,039,689	+		GFF4011	0.50	+0.0
4,039,694	+		GFF4011	0.51	-2.7
4,039,699	+		GFF4011	0.51	-2.0
4,039,702	-		GFF4011	0.52	-1.3
4,039,712	-		GFF4011	0.53	-0.5
4,039,712	-		GFF4011	0.53	+0.7
4,039,717	-		GFF4011	0.54	-1.3
4,039,725	+		GFF4011	0.55	+0.2
4,039,725	+		GFF4011	0.55	-1.5
4,039,733	-		GFF4011	0.56	-1.0
4,039,741	-		GFF4011	0.57	-0.6
4,039,751	-		GFF4011	0.58	-1.9
4,039,752	+		GFF4011	0.58	-1.9
4,039,759	+		GFF4011	0.59	+0.7
4,039,759	+		GFF4011	0.59	+0.3
4,039,764	+		GFF4011	0.60	+0.1
4,039,764	+		GFF4011	0.60	-0.5
4,039,764	+		GFF4011	0.60	+0.2
4,039,764	+		GFF4011	0.60	+0.2
4,039,767	-		GFF4011	0.60	-0.5
4,039,769	+		GFF4011	0.60	-0.3
4,039,769	+		GFF4011	0.60	-1.3
4,039,769	+		GFF4011	0.60	+0.3
4,039,769	+		GFF4011	0.60	-1.4
4,039,769	+		GFF4011	0.60	-0.8
4,039,769	+		GFF4011	0.60	+0.4
4,039,769	+		GFF4011	0.60	+1.5
4,039,769	+		GFF4011	0.60	-0.8
4,039,769	+		GFF4011	0.60	-0.1
4,039,769	+		GFF4011	0.60	-1.1
4,039,769	+		GFF4011	0.60	-0.7
4,039,769	+		GFF4011	0.60	+0.2
4,039,769	+		GFF4011	0.60	-1.8
4,039,769	+		GFF4011	0.60	+0.1
4,039,769	+		GFF4011	0.60	+0.7
4,039,769	+		GFF4011	0.60	-0.8
4,039,769	+		GFF4011	0.60	-0.1
4,039,769	+		GFF4011	0.60	-0.5
4,039,769	+		GFF4011	0.60	+0.1
4,039,769	+		GFF4011	0.60	-1.7
4,039,769	+		GFF4011	0.60	-0.5
4,039,769	+		GFF4011	0.60	-2.2
4,039,769	+		GFF4011	0.60	-0.8
4,039,769	+		GFF4011	0.60	+0.3
4,039,769	+		GFF4011	0.60	-0.3
4,039,769	+		GFF4011	0.60	-0.6
4,039,769	+		GFF4011	0.60	+0.3
4,039,769	+		GFF4011	0.60	+1.2
4,039,769	+		GFF4011	0.60	-0.4
4,039,769	+		GFF4011	0.60	-0.8
4,039,769	+		GFF4011	0.60	-1.5
4,039,772	-		GFF4011	0.61	+0.9
4,039,772	-		GFF4011	0.61	-1.0
4,039,777	-		GFF4011	0.61	-0.1
4,039,777	-		GFF4011	0.61	-2.1
4,039,777	-		GFF4011	0.61	-1.3
4,039,777	-		GFF4011	0.61	-1.5
4,039,777	-		GFF4011	0.61	-0.5
4,039,777	-		GFF4011	0.61	-1.9
4,039,777	-		GFF4011	0.61	-0.9
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