Strain Fitness in Sphingobium sp. HT1-2 around GFF3931

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,968,721	+		GFF3929	0.76	-1.7
3,968,828	-		GFF3929	0.84	-0.3
3,969,018	+				-1.0
3,969,026	-				-1.3
3,969,030	-				+0.1
3,969,060	+				-0.7
3,969,062	+				+0.1
3,969,067	+				+0.1
3,969,070	-				+1.1
3,969,070	-				-1.4
3,969,075	-		GFF3930	0.10	-1.4
3,969,075	-		GFF3930	0.10	+0.3
3,969,075	-		GFF3930	0.10	-0.2
3,969,075	-		GFF3930	0.10	-0.4
3,969,075	-		GFF3930	0.10	-1.4
3,969,140	-		GFF3930	0.27	-0.3
3,969,150	-		GFF3930	0.29	+0.7
3,969,190	+		GFF3930	0.39	+0.4
3,969,193	+		GFF3930	0.40	-0.6
3,969,198	-		GFF3930	0.41	-0.1
3,969,215	+		GFF3930	0.45	-0.4
3,969,215	+		GFF3930	0.45	+0.8
3,969,215	+		GFF3930	0.45	+0.2
3,969,215	+		GFF3930	0.45	-0.4
3,969,223	-		GFF3930	0.47	-0.8
3,969,223	-		GFF3930	0.47	-1.1
3,969,223	-		GFF3930	0.47	-0.1
3,969,223	-		GFF3930	0.47	+0.8
3,969,223	-		GFF3930	0.47	+0.7
3,969,223	-		GFF3930	0.47	-1.1
3,969,223	-		GFF3930	0.47	+1.3
3,969,223	-		GFF3930	0.47	-0.2
3,969,223	-		GFF3930	0.47	-1.0
3,969,230	-		GFF3930	0.49	-0.2
3,969,255	+		GFF3930	0.55	-1.8
3,969,255	+		GFF3930	0.55	-0.4
3,969,255	-		GFF3930	0.55	+0.6
3,969,263	-		GFF3930	0.57	-0.8
3,969,263	-		GFF3930	0.57	-0.2
3,969,263	-		GFF3930	0.57	-1.2
3,969,269	-		GFF3930	0.59	-0.2
3,969,300	-		GFF3930	0.66	+1.1
3,969,300	-		GFF3930	0.66	+0.8
3,969,310	-		GFF3930	0.69	-2.0
3,969,339	+		GFF3930	0.76	-1.3
3,969,346	-		GFF3930	0.78	-0.5
3,969,366	+		GFF3930	0.83	-1.0
3,969,366	+		GFF3930	0.83	+1.9
3,969,366	+		GFF3930	0.83	+0.6
3,969,366	+		GFF3930	0.83	-1.8
3,969,366	+		GFF3930	0.83	-1.0
3,969,366	+		GFF3930	0.83	+1.0
3,969,366	+		GFF3930	0.83	-0.4
3,969,366	+		GFF3930	0.83	-0.5
3,969,366	+		GFF3930	0.83	-1.0
3,969,374	-		GFF3930	0.85	-0.8
3,969,374	-		GFF3930	0.85	-0.1
3,969,374	-		GFF3930	0.85	+0.6
3,969,374	-		GFF3930	0.85	-0.0
3,969,374	-		GFF3930	0.85	-1.5
3,969,381	-		GFF3930	0.87	+0.3
3,969,396	+				-1.3
3,969,400	-				+0.5
3,969,409	-				-0.1
3,969,414	-				+0.3
3,969,416	+				+0.2
3,969,429	+				+0.3
3,969,437	-				-0.2
3,969,454	-				+0.4
3,969,454	-				-1.4
3,969,454	-				+0.1
3,969,454	-				-3.0
3,969,462	+				+1.2
3,969,462	+				+0.3
3,969,467	+				+0.7
3,969,470	-				-1.7
3,969,486	+				-0.4
3,969,507	+				-0.7
3,969,507	+				-1.4
3,969,530	-				-1.1
3,969,548	+				-2.5
3,969,567	+				-1.7
3,969,570	-				+0.5
3,969,642	-		GFF3931	0.12	-1.7
3,969,676	+		GFF3931	0.14	-1.8
3,969,708	-		GFF3931	0.16	-1.8
3,969,722	+		GFF3931	0.17	-2.1
3,969,732	-		GFF3931	0.18	-2.4
3,969,840	-		GFF3931	0.26	-1.3
3,969,840	-		GFF3931	0.26	+0.1
3,969,855	-		GFF3931	0.27	+0.3
3,969,876	+		GFF3931	0.28	-0.5
3,969,877	-		GFF3931	0.28	-1.3
3,969,884	-		GFF3931	0.29	-0.2
3,969,891	-		GFF3931	0.29	-1.8
3,969,976	-		GFF3931	0.35	+0.2
3,969,977	-		GFF3931	0.35	-1.9
3,970,024	-		GFF3931	0.39	-1.3
3,970,095	-		GFF3931	0.44	+0.3
3,970,153	+		GFF3931	0.48	-2.0
3,970,153	+		GFF3931	0.48	-2.1
3,970,161	-		GFF3931	0.48	-1.7
3,970,161	-		GFF3931	0.48	-1.9
3,970,161	-		GFF3931	0.48	+0.2
3,970,161	-		GFF3931	0.48	+0.7
3,970,161	-		GFF3931	0.48	+0.1
3,970,173	-		GFF3931	0.49	+0.6
3,970,207	-		GFF3931	0.52	+0.6
3,970,215	-		GFF3931	0.52	-0.9
3,970,264	-		GFF3931	0.56	-1.8
3,970,311	+		GFF3931	0.59	-1.3
3,970,311	+		GFF3931	0.59	-1.8
3,970,321	+		GFF3931	0.60	-1.4
3,970,321	+		GFF3931	0.60	-1.4
3,970,321	+		GFF3931	0.60	-1.4
3,970,327	+		GFF3931	0.60	-1.2
3,970,359	-		GFF3931	0.62	-0.2
3,970,397	-		GFF3931	0.65	-0.7
3,970,463	+		GFF3931	0.70	+0.2
3,970,520	-		GFF3931	0.74	-0.6
3,970,588	+		GFF3931	0.79	-1.7
3,970,596	-		GFF3931	0.79	-1.3
3,970,596	-		GFF3931	0.79	-1.5
3,970,660	+		GFF3931	0.84	-0.3
3,970,660	+		GFF3931	0.84	-1.7
3,970,666	+		GFF3931	0.84	-1.3
3,970,667	+		GFF3931	0.84	+0.8
3,970,668	-		GFF3931	0.84	-0.3
3,970,680	-		GFF3931	0.85	-2.5
3,970,712	+		GFF3931	0.87	+0.5
3,970,727	-		GFF3931	0.88	-0.3
3,970,742	-		GFF3931	0.89	-1.1
3,970,759	+				-1.4
3,970,759	+				+0.1
3,970,759	+				-1.4
3,970,759	+				-1.7
3,970,759	+				-0.3
3,970,762	-				-1.3
3,970,767	-				-1.4
3,970,767	-				-1.7
3,970,888	-				-0.4
3,970,888	-				-0.6
3,970,888	-				-3.1
3,970,978	-				-0.3
3,970,982	+		GFF3932	0.10	+0.0
3,971,009	+		GFF3932	0.15	-0.4
3,971,014	+		GFF3932	0.15	+0.7
3,971,014	+		GFF3932	0.15	-0.4
3,971,014	+		GFF3932	0.15	+0.6
3,971,014	+		GFF3932	0.15	-0.2
3,971,017	-		GFF3932	0.16	+0.7
3,971,017	-		GFF3932	0.16	+1.1
3,971,022	-		GFF3932	0.17	-0.7
3,971,022	-		GFF3932	0.17	+0.3
3,971,027	-		GFF3932	0.18	+1.1
3,971,035	-		GFF3932	0.19	+1.0
3,971,040	-		GFF3932	0.20	-0.2
3,971,135	+		GFF3932	0.36	+0.5
3,971,135	+		GFF3932	0.36	-1.8
3,971,135	+		GFF3932	0.36	+0.1
3,971,135	+		GFF3932	0.36	+0.3
3,971,135	+		GFF3932	0.36	-1.4
3,971,135	+		GFF3932	0.36	-0.6
3,971,135	+		GFF3932	0.36	+0.8
3,971,135	+		GFF3932	0.36	-0.5
3,971,143	-		GFF3932	0.37	-0.7
3,971,143	-		GFF3932	0.37	+0.8
3,971,143	-		GFF3932	0.37	-1.7
3,971,143	-		GFF3932	0.37	+0.9
3,971,160	+		GFF3932	0.40	+0.3
3,971,160	+		GFF3932	0.40	+0.3
3,971,185	-		GFF3932	0.45	-2.3
3,971,185	-		GFF3932	0.45	-0.6
3,971,185	-		GFF3932	0.45	-0.2
3,971,198	+		GFF3932	0.47	-1.7
3,971,198	+		GFF3932	0.47	-1.0
3,971,198	+		GFF3932	0.47	-0.9
3,971,198	+		GFF3932	0.47	-2.0
3,971,206	-		GFF3932	0.48	-0.8
3,971,206	-		GFF3932	0.48	-1.3
3,971,206	-		GFF3932	0.48	+0.7
3,971,206	-		GFF3932	0.48	+1.0
3,971,206	-		GFF3932	0.48	-0.5
3,971,209	+		GFF3932	0.49	-0.1
3,971,211	-		GFF3932	0.49	-0.2
3,971,227	-		GFF3932	0.52	+0.6
3,971,229	-		GFF3932	0.52	+0.1
3,971,231	+		GFF3932	0.52	-0.8
3,971,236	+		GFF3932	0.53	-0.6
3,971,236	+		GFF3932	0.53	-0.1
3,971,240	-		GFF3932	0.54	-0.5
3,971,242	+		GFF3932	0.54	-0.6
3,971,262	+		GFF3932	0.58	-0.3
3,971,265	+		GFF3932	0.58	-1.1
3,971,265	+		GFF3932	0.58	-1.1
3,971,270	+		GFF3932	0.59	-0.2
3,971,272	+		GFF3932	0.59	-1.7
3,971,272	+		GFF3932	0.59	+0.8
3,971,272	+		GFF3932	0.59	-0.3
3,971,298	+		GFF3932	0.64	+0.1
3,971,303	+		GFF3932	0.65	+0.1
3,971,312	+		GFF3932	0.66	-0.0
3,971,345	+		GFF3932	0.72	-2.9
3,971,345	+		GFF3932	0.72	-0.0
3,971,345	+		GFF3932	0.72	+0.7
3,971,345	+		GFF3932	0.72	+0.4
3,971,345	+		GFF3932	0.72	-1.1
3,971,345	+		GFF3932	0.72	-0.5
3,971,351	+		GFF3932	0.73	-0.6
3,971,353	-		GFF3932	0.73	+1.1
3,971,353	-		GFF3932	0.73	-0.4
3,971,353	-		GFF3932	0.73	-0.5
3,971,353	-		GFF3932	0.73	-1.6
3,971,359	-		GFF3932	0.74	-0.8
3,971,384	+		GFF3932	0.78	-0.9
3,971,387	-		GFF3932	0.79	-1.0
3,971,395	+		GFF3932	0.80	-1.2
3,971,398	+		GFF3932	0.81	-0.5
3,971,406	-		GFF3932	0.82	+0.3
3,971,406	-		GFF3932	0.82	-0.6
3,971,406	-		GFF3932	0.82	-0.1
3,971,406	-		GFF3932	0.82	-0.8
3,971,406	-		GFF3932	0.82	+0.7
3,971,406	-		GFF3932	0.82	-0.1
3,971,406	-		GFF3932	0.82	+1.4
3,971,406	-		GFF3932	0.82	+0.8
3,971,424	+		GFF3932	0.85	+0.9
3,971,427	-		GFF3932	0.86	+0.4
3,971,427	-		GFF3932	0.86	-0.3
3,971,435	+		GFF3932	0.87	-0.2
3,971,443	+		GFF3932	0.88	-0.1
3,971,443	+		GFF3932	0.88	-1.1
3,971,461	+				+0.7
3,971,461	+				-0.4
3,971,461	+				+0.9
3,971,461	+				-1.1
3,971,461	+				-1.2
3,971,461	+				-0.3
3,971,461	+				-0.8
3,971,461	+				+1.5
3,971,461	+				-0.4
3,971,461	+				+0.8
3,971,461	+				-1.4
3,971,461	+				+0.5
3,971,461	+				+0.4
3,971,461	+				+0.2
3,971,461	+				+0.7
3,971,461	+				-0.3
3,971,461	+				-0.3
3,971,461	+				-0.4
3,971,461	+				-0.9
3,971,461	+				+0.7
3,971,461	+				+0.4
3,971,461	+				-0.7
3,971,461	+				-1.4
3,971,461	+				+0.6
3,971,461	+				-0.1
3,971,461	+				-0.6
3,971,461	+				+0.3
3,971,464	-				+0.5
3,971,469	-				-0.4
3,971,469	-				-0.3
3,971,469	-				+0.6
3,971,469	-				-0.1
3,971,469	-				-0.4
3,971,469	-				+0.3
3,971,469	-				+0.4
3,971,469	-				-0.3
3,971,469	-				-0.3
3,971,469	-				-0.8
3,971,469	-				-2.4
3,971,469	-				-0.9
3,971,469	-				+2.5
3,971,469	-				-2.1
3,971,469	-				-0.1
3,971,469	-				+0.4
3,971,469	-				+0.3
3,971,469	-				+0.2
3,971,469	-				-0.3
3,971,469	-				+0.2
3,971,469	-				-0.2
3,971,469	-				+0.7
3,971,469	-				-1.8
3,971,469	-				-0.1
3,971,469	-				+0.6
3,971,469	-				+0.5
3,971,469	-				-0.0
3,971,469	-				-1.1
3,971,469	-				+0.6
3,971,469	-				+0.9
3,971,469	-				-0.1
3,971,469	-				-2.2
3,971,469	-				+0.3
3,971,469	-				+1.2
3,971,469	-				-2.7
3,971,471	-				-1.2
3,971,471	-				-0.1
3,971,471	-				+0.4
3,971,485	-				-1.0
3,971,488	-				+1.1
3,971,506	+				-0.2
3,971,512	-				-0.6
3,971,526	+				-0.1
3,971,529	-				-0.4
3,971,553	+				-1.0
3,971,567	+				+0.8
3,971,569	+				+0.2
3,971,575	-				+1.0
3,971,577	+				-0.4
3,971,585	-				+0.4
3,971,599	+				-1.0
3,971,609	+				+0.5
3,971,609	-				+0.2
3,971,612	-				-0.2
3,971,612	-				-2.3
3,971,617	-				-0.7
3,971,617	-				-1.0
3,971,617	-				-0.9
3,971,623	-				+0.0
3,971,631	+		GFF3933	0.10	+0.1
3,971,631	+		GFF3933	0.10	+1.3
3,971,639	-		GFF3933	0.11	-1.3
3,971,639	-		GFF3933	0.11	+0.3
3,971,644	-		GFF3933	0.11	-1.1
3,971,726	-		GFF3933	0.17	+1.1
3,971,729	+		GFF3933	0.17	+0.5
3,971,731	-		GFF3933	0.17	+0.8
3,971,752	+		GFF3933	0.19	+0.5
3,971,767	-		GFF3933	0.20	+0.2
3,971,775	+		GFF3933	0.20	-1.3
3,971,788	-		GFF3933	0.21	-1.6
3,971,795	-		GFF3933	0.22	-0.2
3,971,804	+		GFF3933	0.22	+1.5
3,971,814	-		GFF3933	0.23	+1.0
3,971,825	+		GFF3933	0.24	+0.9
3,971,827	-		GFF3933	0.24	+0.5
3,971,828	-		GFF3933	0.24	-0.2
3,971,837	+		GFF3933	0.24	-1.8
3,971,837	+		GFF3933	0.24	-0.1
3,971,847	+		GFF3933	0.25	+0.2
3,971,847	+		GFF3933	0.25	-0.2
3,971,855	-		GFF3933	0.26	-0.2
3,971,855	-		GFF3933	0.26	-2.6
3,971,855	-		GFF3933	0.26	-1.2
3,971,862	+		GFF3933	0.26	-0.3
3,971,876	+		GFF3933	0.27	+1.3
3,971,876	+		GFF3933	0.27	-1.6
3,971,876	+		GFF3933	0.27	-2.2
3,971,876	+		GFF3933	0.27	-2.2
3,971,878	+		GFF3933	0.27	+0.1
3,971,884	+		GFF3933	0.28	+0.6
3,971,884	-		GFF3933	0.28	-0.2
3,971,884	-		GFF3933	0.28	-0.3
3,971,884	-		GFF3933	0.28	-1.5