Strain Fitness in Sphingobium sp. HT1-2 around GFF3917

Experiment: EMM_noCarbon with Sucrose and Putrescine

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	EMM_noCarbon with Sucrose and Putrescine
3,954,529	+				-0.6
3,954,529	+				-0.8
3,954,529	+				-1.0
3,954,529	+				-0.8
3,954,529	+				-0.6
3,954,529	+				-0.9
3,954,533	-				+0.4
3,954,537	-				+0.3
3,954,537	-				-0.3
3,954,537	-				-0.8
3,954,537	-				-0.5
3,954,584	-				+0.5
3,954,598	-		GFF3916	0.11	-0.4
3,954,602	+		GFF3916	0.12	+0.7
3,954,610	-		GFF3916	0.12	+0.4
3,954,610	-		GFF3916	0.12	-0.3
3,954,633	-		GFF3916	0.15	+0.6
3,954,657	-		GFF3916	0.17	+0.1
3,954,692	-		GFF3916	0.21	-2.2
3,954,697	-		GFF3916	0.21	+1.2
3,954,699	-		GFF3916	0.21	+0.4
3,954,745	+		GFF3916	0.26	-0.2
3,954,771	+		GFF3916	0.28	-0.9
3,954,771	+		GFF3916	0.28	+0.2
3,954,771	-		GFF3916	0.28	-1.0
3,954,779	+		GFF3916	0.29	-0.3
3,954,779	-		GFF3916	0.29	-1.1
3,954,809	+		GFF3916	0.32	+0.5
3,954,809	+		GFF3916	0.32	+0.8
3,954,809	+		GFF3916	0.32	-1.0
3,954,814	+		GFF3916	0.33	-1.1
3,954,816	+		GFF3916	0.33	-2.2
3,954,817	-		GFF3916	0.33	-1.7
3,954,818	+		GFF3916	0.33	-0.1
3,954,824	-		GFF3916	0.34	+0.5
3,954,824	-		GFF3916	0.34	-1.5
3,954,853	+		GFF3916	0.36	-0.2
3,954,853	+		GFF3916	0.36	-0.0
3,954,853	+		GFF3916	0.36	-1.7
3,954,853	+		GFF3916	0.36	-2.3
3,954,853	+		GFF3916	0.36	-1.4
3,954,853	+		GFF3916	0.36	-0.4
3,954,853	+		GFF3916	0.36	+1.0
3,954,853	+		GFF3916	0.36	+0.2
3,954,853	+		GFF3916	0.36	+0.7
3,954,853	+		GFF3916	0.36	+0.3
3,954,853	+		GFF3916	0.36	-0.1
3,954,853	+		GFF3916	0.36	+0.3
3,954,853	+		GFF3916	0.36	+1.1
3,954,853	+		GFF3916	0.36	-1.0
3,954,853	+		GFF3916	0.36	+0.6
3,954,853	+		GFF3916	0.36	+0.2
3,954,853	+		GFF3916	0.36	-2.2
3,954,853	+		GFF3916	0.36	-0.4
3,954,853	+		GFF3916	0.36	-1.2
3,954,853	+		GFF3916	0.36	-0.3
3,954,853	+		GFF3916	0.36	+0.5
3,954,853	+		GFF3916	0.36	-0.2
3,954,853	+		GFF3916	0.36	+0.7
3,954,853	+		GFF3916	0.36	-1.5
3,954,853	+		GFF3916	0.36	-2.1
3,954,853	+		GFF3916	0.36	-1.9
3,954,853	+		GFF3916	0.36	+1.3
3,954,853	+		GFF3916	0.36	-0.4
3,954,853	+		GFF3916	0.36	+0.7
3,954,853	+		GFF3916	0.36	-1.7
3,954,853	+		GFF3916	0.36	+1.1
3,954,861	-		GFF3916	0.37	-0.9
3,954,861	-		GFF3916	0.37	+0.2
3,954,861	-		GFF3916	0.37	-1.0
3,954,861	-		GFF3916	0.37	-0.7
3,954,861	-		GFF3916	0.37	-1.3
3,954,861	-		GFF3916	0.37	-0.5
3,954,861	-		GFF3916	0.37	-0.6
3,954,861	-		GFF3916	0.37	+0.7
3,954,861	-		GFF3916	0.37	-2.2
3,954,861	-		GFF3916	0.37	-0.3
3,954,861	-		GFF3916	0.37	-0.8
3,954,861	-		GFF3916	0.37	+0.8
3,954,861	-		GFF3916	0.37	+0.5
3,954,861	-		GFF3916	0.37	+0.6
3,954,861	-		GFF3916	0.37	+1.0
3,954,861	-		GFF3916	0.37	+0.5
3,954,861	-		GFF3916	0.37	+0.7
3,954,861	-		GFF3916	0.37	-0.5
3,954,861	-		GFF3916	0.37	+0.3
3,954,861	-		GFF3916	0.37	-0.0
3,954,861	-		GFF3916	0.37	-2.6
3,954,861	-		GFF3916	0.37	-0.4
3,954,861	-		GFF3916	0.37	-2.4
3,954,861	-		GFF3916	0.37	+0.0
3,954,861	-		GFF3916	0.37	+1.2
3,954,861	-		GFF3916	0.37	-0.6
3,954,861	-		GFF3916	0.37	-1.9
3,954,863	+		GFF3916	0.37	-0.6
3,954,863	+		GFF3916	0.37	+0.4
3,954,864	+		GFF3916	0.37	-0.2
3,954,871	-		GFF3916	0.38	+0.0
3,954,871	-		GFF3916	0.38	+0.2
3,954,888	+		GFF3916	0.40	-0.5
3,954,913	+		GFF3916	0.42	+1.7
3,954,913	+		GFF3916	0.42	+1.3
3,954,920	+		GFF3916	0.43	+0.0
3,954,920	+		GFF3916	0.43	-0.2
3,954,920	+		GFF3916	0.43	-1.1
3,954,920	+		GFF3916	0.43	-0.0
3,954,920	+		GFF3916	0.43	+0.1
3,954,920	+		GFF3916	0.43	+0.8
3,954,921	-		GFF3916	0.43	+0.5
3,954,928	-		GFF3916	0.44	-1.1
3,954,928	-		GFF3916	0.44	-0.6
3,954,928	-		GFF3916	0.44	-0.9
3,954,928	-		GFF3916	0.44	-0.8
3,954,928	-		GFF3916	0.44	-0.2
3,954,928	-		GFF3916	0.44	-0.3
3,954,928	-		GFF3916	0.44	+0.6
3,954,928	-		GFF3916	0.44	+1.0
3,954,928	-		GFF3916	0.44	+0.4
3,954,935	+		GFF3916	0.44	-0.1
3,954,946	+		GFF3916	0.46	-0.4
3,954,954	-		GFF3916	0.46	+0.7
3,954,983	+		GFF3916	0.49	-0.3
3,954,983	+		GFF3916	0.49	+0.4
3,954,983	+		GFF3916	0.49	+0.2
3,954,993	+		GFF3916	0.50	-1.3
3,954,993	+		GFF3916	0.50	-1.6
3,954,993	+		GFF3916	0.50	+0.0
3,954,993	+		GFF3916	0.50	-0.6
3,954,993	+		GFF3916	0.50	+0.5
3,954,993	+		GFF3916	0.50	-0.3
3,954,993	+		GFF3916	0.50	+0.7
3,955,000	-		GFF3916	0.51	-1.2
3,955,001	-		GFF3916	0.51	-0.4
3,955,001	-		GFF3916	0.51	-1.4
3,955,001	-		GFF3916	0.51	+0.8
3,955,001	-		GFF3916	0.51	-0.3
3,955,001	-		GFF3916	0.51	-1.7
3,955,001	-		GFF3916	0.51	-0.3
3,955,006	+		GFF3916	0.51	+1.2
3,955,006	+		GFF3916	0.51	+0.1
3,955,006	+		GFF3916	0.51	+0.2
3,955,006	+		GFF3916	0.51	-0.6
3,955,006	+		GFF3916	0.51	-0.8
3,955,006	+		GFF3916	0.51	-0.4
3,955,006	+		GFF3916	0.51	-0.0
3,955,006	+		GFF3916	0.51	-0.1
3,955,006	+		GFF3916	0.51	+0.1
3,955,006	+		GFF3916	0.51	-0.6
3,955,006	+		GFF3916	0.51	+0.7
3,955,006	+		GFF3916	0.51	+0.6
3,955,006	+		GFF3916	0.51	-1.5
3,955,006	+		GFF3916	0.51	+0.1
3,955,006	+		GFF3916	0.51	-1.5
3,955,006	+		GFF3916	0.51	+0.5
3,955,006	+		GFF3916	0.51	+0.0
3,955,006	+		GFF3916	0.51	+0.6
3,955,014	-		GFF3916	0.52	-0.9
3,955,014	-		GFF3916	0.52	-0.4
3,955,014	-		GFF3916	0.52	+1.0
3,955,014	-		GFF3916	0.52	-0.2
3,955,014	-		GFF3916	0.52	+0.3
3,955,014	-		GFF3916	0.52	+1.1
3,955,014	-		GFF3916	0.52	-0.6
3,955,014	-		GFF3916	0.52	+0.7
3,955,014	-		GFF3916	0.52	-1.5
3,955,014	-		GFF3916	0.52	-0.7
3,955,014	-		GFF3916	0.52	-0.0
3,955,014	-		GFF3916	0.52	+0.4
3,955,014	-		GFF3916	0.52	-0.5
3,955,014	-		GFF3916	0.52	-0.1
3,955,014	-		GFF3916	0.52	+0.6
3,955,014	-		GFF3916	0.52	+1.1
3,955,014	-		GFF3916	0.52	+0.9
3,955,014	-		GFF3916	0.52	+0.2
3,955,014	-		GFF3916	0.52	+0.1
3,955,014	-		GFF3916	0.52	+1.2
3,955,014	-		GFF3916	0.52	+0.4
3,955,014	-		GFF3916	0.52	-1.9
3,955,014	-		GFF3916	0.52	+0.0
3,955,014	-		GFF3916	0.52	-0.4
3,955,024	-		GFF3916	0.53	-0.5
3,955,041	-		GFF3916	0.55	-0.0
3,955,047	+		GFF3916	0.55	-1.5
3,955,047	+		GFF3916	0.55	-1.2
3,955,055	+		GFF3916	0.56	+0.2
3,955,060	+		GFF3916	0.57	-0.5
3,955,061	-		GFF3916	0.57	-0.1
3,955,064	+		GFF3916	0.57	-0.4
3,955,089	-		GFF3916	0.60	-0.3
3,955,101	+		GFF3916	0.61	+0.5
3,955,109	-		GFF3916	0.62	+0.6
3,955,113	+		GFF3916	0.62	-0.3
3,955,113	+		GFF3916	0.62	+1.0
3,955,121	-		GFF3916	0.63	+0.4
3,955,134	+		GFF3916	0.64	+1.2
3,955,135	+		GFF3916	0.64	-0.7
3,955,135	+		GFF3916	0.64	-0.3
3,955,135	+		GFF3916	0.64	+0.7
3,955,135	+		GFF3916	0.64	-0.8
3,955,143	-		GFF3916	0.65	-0.1
3,955,143	-		GFF3916	0.65	-1.5
3,955,143	-		GFF3916	0.65	+1.0
3,955,143	-		GFF3916	0.65	-1.2
3,955,143	-		GFF3916	0.65	-1.4
3,955,143	-		GFF3916	0.65	+0.6
3,955,148	-		GFF3916	0.65	-0.2
3,955,167	+		GFF3916	0.67	+0.1
3,955,183	+		GFF3916	0.69	+0.3
3,955,183	+		GFF3916	0.69	-0.8
3,955,183	+		GFF3916	0.69	-2.2
3,955,183	+		GFF3916	0.69	+0.8
3,955,183	+		GFF3916	0.69	-1.2
3,955,183	+		GFF3916	0.69	-1.7
3,955,183	+		GFF3916	0.69	+1.0
3,955,183	+		GFF3916	0.69	-0.7
3,955,183	+		GFF3916	0.69	-0.7
3,955,183	+		GFF3916	0.69	-0.3
3,955,183	+		GFF3916	0.69	-1.2
3,955,189	-		GFF3916	0.69	+0.5
3,955,191	-		GFF3916	0.70	-1.0
3,955,191	-		GFF3916	0.70	+2.0
3,955,191	-		GFF3916	0.70	-1.3
3,955,191	-		GFF3916	0.70	+1.4
3,955,191	-		GFF3916	0.70	+0.5
3,955,191	-		GFF3916	0.70	+0.4
3,955,191	-		GFF3916	0.70	-1.0
3,955,191	-		GFF3916	0.70	-0.5
3,955,191	-		GFF3916	0.70	-0.8
3,955,217	+		GFF3916	0.72	+1.0
3,955,217	+		GFF3916	0.72	+0.8
3,955,222	+		GFF3916	0.73	-2.2
3,955,222	+		GFF3916	0.73	-0.1
3,955,222	+		GFF3916	0.73	-0.3
3,955,222	+		GFF3916	0.73	-0.7
3,955,222	+		GFF3916	0.73	+0.0
3,955,222	+		GFF3916	0.73	-0.9
3,955,227	+		GFF3916	0.73	+0.3
3,955,227	+		GFF3916	0.73	+1.4
3,955,227	+		GFF3916	0.73	-0.4
3,955,230	-		GFF3916	0.73	+0.3
3,955,230	-		GFF3916	0.73	+0.5
3,955,230	-		GFF3916	0.73	+0.1
3,955,230	-		GFF3916	0.73	+0.5
3,955,230	-		GFF3916	0.73	-0.4
3,955,230	-		GFF3916	0.73	+0.8
3,955,230	-		GFF3916	0.73	+0.8
3,955,230	-		GFF3916	0.73	+0.2
3,955,230	-		GFF3916	0.73	-0.4
3,955,230	-		GFF3916	0.73	-1.3
3,955,235	-		GFF3916	0.74	-0.9
3,955,235	-		GFF3916	0.74	-0.4
3,955,272	+		GFF3916	0.78	-0.9
3,955,284	+		GFF3916	0.79	-0.5
3,955,287	+		GFF3916	0.79	-0.1
3,955,287	-		GFF3916	0.79	-1.7
3,955,287	-		GFF3916	0.79	+0.9
3,955,289	+		GFF3916	0.79	-0.6
3,955,297	-		GFF3916	0.80	-2.0
3,955,341	+		GFF3916	0.84	+0.6
3,955,341	+		GFF3916	0.84	-1.0
3,955,341	+		GFF3916	0.84	-0.9
3,955,341	+		GFF3916	0.84	-0.5
3,955,349	-		GFF3916	0.85	-0.8
3,955,372	+		GFF3916	0.87	-0.8
3,955,372	+		GFF3916	0.87	+0.3
3,955,382	+		GFF3916	0.88	-0.7
3,955,390	+		GFF3916	0.89	+0.3
3,955,390	+		GFF3916	0.89	-0.2
3,955,404	-				-1.3
3,955,413	+				+0.7
3,955,413	+				-0.2
3,955,426	-				+0.2
3,955,426	-				-0.8
3,955,435	-				-0.1
3,955,441	+				-0.9
3,955,441	+				+0.4
3,955,443	-				-0.5
3,955,449	-				-1.0
3,955,449	-				-1.2
3,955,454	+				+1.3
3,955,454	+				+0.0
3,955,457	-				+0.6
3,955,457	-				-0.4
3,955,459	+				+0.4
3,955,459	+				+0.8
3,955,459	+				+0.9
3,955,459	+				-1.5
3,955,459	+				-2.5
3,955,459	+				-0.6
3,955,459	+				+1.0
3,955,459	+				-0.6
3,955,459	+				-0.4
3,955,464	+				-1.5
3,955,467	-				-0.8
3,955,467	-				-1.5
3,955,467	-				-0.3
3,955,467	-				-0.7
3,955,467	-				-1.9
3,955,467	-				+0.0
3,955,467	-				-2.0
3,955,467	-				+0.1
3,955,467	-				-0.3
3,955,467	-				+0.5
3,955,467	-				-1.8
3,955,467	-				+0.7
3,955,467	-				-0.1
3,955,467	-				-0.5
3,955,467	-				+0.7
3,955,467	-				-0.5
3,955,469	+				-1.0
3,955,495	+				-0.8
3,955,509	+				+0.8
3,955,509	+				+0.2
3,955,517	-				+0.8
3,955,517	-				-0.6
3,955,517	-				-0.0
3,955,532	-				+0.1
3,955,532	-				+0.3
3,955,534	+				+0.5
3,955,534	+				-1.1
3,955,534	+				+1.2
3,955,534	+				-0.1
3,955,534	+				+1.7
3,955,534	+				+0.4
3,955,534	+				+0.5
3,955,534	+				-1.3
3,955,534	+				-0.0
3,955,534	+				-1.6
3,955,534	+				+0.7
3,955,534	+				-0.2
3,955,534	+				+0.7
3,955,540	-				-0.7
3,955,542	-				+0.3
3,955,542	-				-2.4
3,955,542	-				-0.3
3,955,542	-				+0.3
3,955,542	-				+0.3
3,955,542	-				+1.5
3,955,542	-				+0.4
3,955,542	-				-0.5
3,955,542	-				-1.5
3,955,549	+		GFF3917	0.14	-2.8
3,955,552	-		GFF3917	0.16	-0.5
3,955,558	+		GFF3917	0.20	-0.0
3,955,568	+		GFF3917	0.26	-0.3
3,955,568	+		GFF3917	0.26	-1.1
3,955,570	+		GFF3917	0.27	+0.0
3,955,574	-		GFF3917	0.30	-0.9
3,955,576	-		GFF3917	0.31	-0.8
3,955,576	-		GFF3917	0.31	+1.0
3,955,580	+		GFF3917	0.33	-1.2
3,955,603	-		GFF3917	0.48	-0.2
3,955,643	+		GFF3917	0.72	-1.3
3,955,643	+		GFF3917	0.72	+0.3
3,955,646	-		GFF3917	0.74	+0.8
3,955,651	-		GFF3917	0.77	-0.6
3,955,695	-				+0.9
3,955,706	+				-1.3
3,955,712	+				+0.0
3,955,714	-				-0.5
3,955,722	+				-1.6
3,955,724	+				+0.3
3,955,730	-				-0.1
3,955,730	-				+0.8
3,955,730	-				+0.4
3,955,760	+				-0.7
3,955,816	+				+0.9
3,955,836	+				+0.4
3,955,879	+		GFF3918	0.12	+0.1
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3,956,240	+		GFF3918	0.69	-0.3
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3,956,240	+		GFF3918	0.69	-1.1
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3,956,300	+		GFF3918	0.78	-1.8
3,956,300	+		GFF3918	0.78	-1.0
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3,956,303	-		GFF3918	0.79	-1.7
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3,956,309	+		GFF3918	0.80	-1.1
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3,956,389	+				-1.5
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3,956,399	+				-2.2
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3,956,404	+				-1.7
3,956,404	+				-1.6
3,956,404	+				-0.6
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3,956,431	+				+0.5
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3,956,447	+				-1.2
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3,956,473	-				+1.0
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3,956,473	-				-1.9
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